Wall clock time and date at job start Mon Mar 30 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47435 * 2 1 4 4 N 1.46493 * 109.47784 * 179.97438 * 3 2 1 5 5 C 1.36717 * 119.99937 * 95.90209 * 4 3 2 6 6 H 1.07999 * 120.00259 * 220.52532 * 5 4 3 7 7 C 1.39125 * 119.99818 * 40.52801 * 5 4 3 8 8 N 1.31319 * 120.00081 * 17.95669 * 7 5 4 9 9 Si 1.86803 * 119.99723 * 197.95548 * 7 5 4 10 10 H 1.48497 * 109.47514 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46706 * 120.00336 * 9 7 5 12 12 H 1.48504 * 109.46966 * 239.99848 * 9 7 5 13 13 C 1.34777 * 120.00244 * 275.91261 * 4 3 2 14 14 O 1.21763 * 120.00340 * 179.97438 * 13 4 3 15 15 C 1.46226 * 119.99903 * 359.97438 * 13 4 3 16 16 C 1.34981 * 120.00191 * 171.96561 * 15 13 4 17 17 C 1.47147 * 119.99762 * 349.04307 * 16 15 13 18 18 C 1.39895 * 120.16850 * 136.92063 * 17 16 15 19 19 C 1.37857 * 119.82079 * 179.97438 * 18 17 16 20 20 C 1.38437 * 120.17511 * 0.02562 * 19 18 17 21 21 C 1.38401 * 120.34947 * 359.97303 * 20 19 18 22 22 C 1.50697 * 119.91112 * 180.02562 * 21 20 19 23 23 C 1.37896 * 120.17302 * 359.79107 * 21 20 19 24 24 H 1.09003 * 109.47309 * 299.99864 * 1 2 3 25 25 H 1.08997 * 109.46932 * 60.00135 * 1 2 3 26 26 H 1.09000 * 109.47010 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47310 * 239.99578 * 2 1 3 28 28 H 1.08997 * 109.46932 * 119.99865 * 2 1 3 29 29 H 1.09003 * 109.47216 * 59.99521 * 3 2 1 30 30 H 1.09008 * 109.47062 * 300.00351 * 3 2 1 31 31 H 0.97002 * 120.00339 * 179.97438 * 8 7 5 32 32 H 1.08007 * 120.00110 * 351.96407 * 15 13 4 33 33 H 1.07994 * 119.99982 * 169.04526 * 16 15 13 34 34 H 1.07999 * 120.09161 * 359.95503 * 18 17 16 35 35 H 1.07997 * 119.91496 * 180.02562 * 19 18 17 36 36 H 1.07990 * 119.82804 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47099 * 90.00041 * 22 21 20 38 38 H 1.08999 * 109.46848 * 210.00392 * 22 21 20 39 39 H 1.09006 * 109.47364 * 330.00072 * 22 21 20 40 40 H 1.07997 * 120.09022 * 180.23059 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1891 1.5641 -1.1769 6 1 5.0749 0.9712 -1.3505 7 6 3.7441 2.4518 -2.1513 8 7 2.9065 3.4115 -1.8321 9 14 4.3381 2.2784 -3.9139 10 1 5.2691 1.1257 -4.0114 11 1 3.1745 2.0514 -4.8083 12 1 5.0423 3.5201 -4.3233 13 6 4.1784 1.3225 1.1619 14 8 5.3961 1.3221 1.1624 15 6 3.4468 1.1928 2.4213 16 6 4.1113 0.9106 3.5619 17 6 5.5224 0.4972 3.5082 18 6 6.4434 1.0199 4.4223 19 6 7.7637 0.6272 4.3659 20 6 8.1790 -0.2814 3.4075 21 6 7.2740 -0.8030 2.4996 22 6 7.7368 -1.7918 1.4609 23 6 5.9490 -0.4239 2.5462 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 2.5965 4.0307 -2.5114 32 1 2.3747 1.3227 2.4389 33 1 3.6071 0.9883 4.5138 34 1 6.1211 1.7293 5.1701 35 1 8.4758 1.0294 5.0711 36 1 9.2147 -0.5848 3.3681 37 1 7.6460 -2.8034 1.8564 38 1 7.1209 -1.6945 0.5669 39 1 8.7782 -1.5926 1.2081 40 1 5.2431 -0.8346 1.8394 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491248458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:08 Heat of formation + Delta-G solvation = -6.360455 kcal Electronic energy + Delta-G solvation = -21178.166560 eV Core-core repulsion = 18150.728460 eV Total energy + Delta-G solvation = -3027.438100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85255 -39.64207 -37.12171 -35.01964 -34.41324 -33.11973 -32.98097 -30.53020 -27.88568 -27.63184 -26.51448 -24.55838 -22.71238 -22.38016 -21.81956 -19.50694 -18.73325 -18.10699 -17.34155 -16.75041 -16.24114 -16.01986 -15.55130 -15.34663 -15.18567 -14.76945 -14.39403 -14.31631 -14.06389 -13.79311 -13.48582 -13.30923 -13.15440 -13.08551 -12.98992 -12.76595 -12.58507 -12.30454 -12.07536 -11.98282 -11.88528 -11.81854 -11.55069 -10.91325 -10.67463 -10.25072 -9.50448 -9.19238 -8.83972 -8.34952 -6.07388 -0.02000 0.69854 1.13398 1.36743 1.37755 1.50945 2.26756 2.61217 3.05242 3.12215 3.19784 3.91086 4.02642 4.12970 4.14198 4.22056 4.33890 4.35973 4.49933 4.56947 4.62024 4.66686 4.78214 4.80121 4.84975 4.96770 4.97419 5.13874 5.23993 5.27786 5.28853 5.35051 5.39059 5.43304 5.51195 5.59191 5.70341 5.79933 5.91438 6.24542 6.29997 6.61128 7.22906 7.50385 8.17309 8.67427 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.006192 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.240563 B = 4520.827493 C = 5339.787104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.130 4.130 3 C 0.109 3.891 4 N -0.446 5.446 5 C -0.333 4.333 6 H 0.060 0.940 7 C 0.004 3.996 8 N -0.889 5.889 9 Si 0.977 3.023 10 H -0.271 1.271 11 H -0.262 1.262 12 H -0.279 1.279 13 C 0.464 3.536 14 O -0.604 6.604 15 C -0.201 4.201 16 C -0.051 4.051 17 C -0.075 4.075 18 C -0.121 4.121 19 C -0.138 4.138 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.104 4.104 23 C -0.047 4.047 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.273 0.727 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -7.242 9.519 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C -0.014 4.014 4 N -0.163 5.163 5 C -0.462 4.462 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.527 5.527 9 Si 0.801 3.199 10 H -0.196 1.196 11 H -0.187 1.187 12 H -0.205 1.205 13 C 0.257 3.743 14 O -0.491 6.491 15 C -0.222 4.222 16 C -0.071 4.071 17 C -0.075 4.075 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.161 4.161 23 C -0.066 4.066 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.131 -7.072 9.353 11.726 hybrid contribution 0.119 0.386 -1.351 1.410 sum -0.012 -6.686 8.002 10.428 Atomic orbital electron populations 1.21631 0.93217 1.02411 1.02209 1.21885 0.97462 0.96487 1.01053 1.21639 0.80454 0.96478 1.02823 1.43668 1.05834 1.61972 1.04792 1.19308 1.11558 1.22096 0.93243 0.92258 1.26157 0.97003 0.92876 1.03862 1.69950 1.33306 1.14084 1.35313 0.85129 0.78622 0.78176 0.77964 1.19588 1.18692 1.20484 1.19157 0.87834 0.82196 0.85152 1.90682 1.15007 1.56419 1.87035 1.23310 1.00647 1.05527 0.92688 1.22638 0.92406 0.93689 0.98333 1.19139 0.94551 0.97438 0.96345 1.21445 0.93578 1.00028 0.98873 1.21243 0.96029 0.98576 0.99764 1.21288 0.99540 0.97950 0.95432 1.20029 0.93604 1.00293 0.98542 1.20699 1.01473 0.97852 0.96031 1.20887 0.95537 0.95992 0.94139 0.91435 0.93181 0.91172 0.93841 0.92406 0.91924 0.90262 0.91711 0.83658 0.81312 0.84207 0.83542 0.84339 0.89775 0.94056 0.90583 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.13 -4.64 6.17 30.59 0.19 -4.45 16 3 C 0.11 4.78 4.57 86.38 0.40 5.18 16 4 N -0.45 -23.32 2.50 -640.58 -1.60 -24.93 16 5 C -0.33 -19.27 8.85 84.14 0.74 -18.53 16 6 H 0.06 3.68 7.80 -2.91 -0.02 3.66 16 7 C 0.00 0.21 4.96 84.98 0.42 0.63 16 8 N -0.89 -48.95 11.55 21.69 0.25 -48.70 16 9 Si 0.98 43.27 29.59 68.60 2.03 45.30 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 C 0.46 23.54 6.50 86.32 0.56 24.10 16 14 O -0.60 -34.47 12.11 -4.55 -0.06 -34.53 16 15 C -0.20 -7.77 8.59 23.60 0.20 -7.57 16 16 C -0.05 -1.68 9.82 23.86 0.23 -1.45 16 17 C -0.07 -2.77 4.54 -20.15 -0.09 -2.87 16 18 C -0.12 -3.85 9.80 22.58 0.22 -3.63 16 19 C -0.14 -4.04 10.03 22.23 0.22 -3.82 16 20 C -0.12 -3.85 9.69 22.36 0.22 -3.64 16 21 C -0.12 -4.51 5.87 -19.91 -0.12 -4.62 16 22 C -0.10 -3.21 10.01 71.23 0.71 -2.50 16 23 C -0.05 -1.92 6.26 22.58 0.14 -1.78 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.97 7.62 -2.39 -0.02 1.95 16 29 H 0.06 2.50 6.34 -2.39 -0.02 2.48 16 30 H 0.08 3.86 5.71 -2.38 -0.01 3.85 16 31 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 32 H 0.15 4.75 6.27 -2.91 -0.02 4.73 16 33 H 0.17 3.91 8.06 -2.91 -0.02 3.88 16 34 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 35 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.14 3.40 8.06 -2.92 -0.02 3.37 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.04 1.45 8.08 -2.39 -0.02 1.43 16 39 H 0.08 2.05 8.08 -2.38 -0.02 2.03 16 40 H 0.08 3.74 6.99 -2.91 -0.02 3.72 16 Total: -1.00 -70.78 330.79 6.40 -64.38 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 1.01 Total: 26.40 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 4.77 Total: -27.91 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.35 Total: -73.63 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.06 Total: -34.53 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.78 6.40 -64.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491248458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.016 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds