Wall clock time and date at job start Mon Mar 30 2020 01:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.53001 * 109.47292 * 239.99515 * 2 1 3 5 5 C 1.50704 * 109.46948 * 119.99711 * 2 1 3 6 6 C 1.33039 * 119.99738 * 67.11154 * 5 2 1 7 7 C 1.47039 * 120.00283 * 353.26048 * 6 5 2 8 8 O 1.21626 * 119.99915 * 358.43209 * 7 6 5 9 9 N 1.34781 * 120.00019 * 178.42954 * 7 6 5 10 10 C 1.39103 * 119.99565 * 175.14898 * 9 7 6 11 11 C 1.39517 * 119.83689 * 324.48944 * 10 9 7 12 12 C 1.36357 * 120.16376 * 179.76067 * 11 10 9 13 13 C 1.40880 * 119.83469 * 0.52393 * 12 11 10 14 14 C 1.41131 * 120.16417 * 179.71581 * 13 12 11 15 15 H 1.07998 * 119.99535 * 209.00175 * 14 13 12 16 16 C 1.39912 * 119.99971 * 29.00565 * 14 13 12 17 17 N 1.30872 * 119.99920 * 10.54947 * 16 14 13 18 18 Si 1.86796 * 119.99765 * 190.54974 * 16 14 13 19 19 H 1.48504 * 109.47308 * 60.00255 * 18 16 14 20 20 H 1.48510 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47330 * 299.99938 * 18 16 14 22 22 C 1.40890 * 119.67523 * 359.73398 * 13 12 11 23 23 C 1.36355 * 119.83053 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.46581 * 336.58825 * 1 2 3 25 25 H 1.08998 * 109.47031 * 96.58843 * 1 2 3 26 26 H 1.09004 * 109.47392 * 216.59388 * 1 2 3 27 27 H 1.09004 * 109.46869 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.46937 * 299.99588 * 3 2 1 29 29 H 1.08999 * 109.47213 * 60.00234 * 3 2 1 30 30 H 1.08996 * 109.47425 * 269.10623 * 4 2 1 31 31 H 1.09005 * 109.46412 * 29.10525 * 4 2 1 32 32 H 1.08993 * 109.46905 * 149.10043 * 4 2 1 33 33 H 1.08000 * 120.00294 * 247.38682 * 5 2 1 34 34 H 1.08001 * 120.00050 * 173.25842 * 6 5 2 35 35 H 0.96994 * 120.00278 * 355.14839 * 9 7 6 36 36 H 1.08004 * 119.91967 * 0.03515 * 11 10 9 37 37 H 1.08006 * 120.08617 * 180.23534 * 12 11 10 38 38 H 0.96996 * 120.00031 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.08445 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.91806 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.8315 -2.0179 1.3723 7 6 0.9938 -2.7422 0.4050 8 8 0.4613 -2.1411 -0.5084 9 7 0.8162 -4.0724 0.5306 10 6 -0.0555 -4.7411 -0.3226 11 6 -1.2246 -4.1127 -0.7525 12 6 -2.0814 -4.7602 -1.5927 13 6 -1.7891 -6.0711 -2.0178 14 6 -2.6741 -6.7500 -2.8826 15 1 -2.7411 -7.8274 -2.8493 16 6 -3.4643 -6.0273 -3.7831 17 7 -3.2404 -4.7519 -3.9725 18 14 -4.8387 -6.8829 -4.7147 19 1 -5.8173 -7.4437 -3.7487 20 1 -5.5209 -5.9044 -5.5994 21 1 -4.2704 -7.9809 -5.5373 22 6 -0.6093 -6.7013 -1.5752 23 6 0.2404 -6.0394 -0.7390 24 1 -0.3632 0.9431 0.4084 25 1 -0.3633 -0.1179 -1.0209 26 1 -0.3634 -0.8251 0.6126 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.1763 -1.7798 -1.0274 31 1 1.3145 -0.6094 -2.0550 32 1 2.9925 -0.2886 -1.5551 33 1 2.5514 -0.1573 1.9994 34 1 2.2838 -2.5473 2.1979 35 1 1.2962 -4.5633 1.2157 36 1 -1.4493 -3.1091 -0.4225 37 1 -2.9842 -4.2711 -1.9277 38 1 -3.7880 -4.2509 -4.5970 39 1 -0.3790 -7.7062 -1.8966 40 1 1.1450 -6.5213 -0.3985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491688054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:36 Heat of formation + Delta-G solvation = 22.793894 kcal Electronic energy + Delta-G solvation = -20950.958120 eV Core-core repulsion = 17924.784248 eV Total energy + Delta-G solvation = -3026.173873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28912 -37.90407 -36.30174 -34.25429 -32.93215 -31.48948 -29.48223 -28.87123 -27.00708 -26.88154 -25.28761 -23.11441 -21.35308 -20.80080 -19.84186 -18.14610 -17.27742 -16.55290 -16.32192 -15.25550 -14.95811 -14.56473 -14.17376 -13.88204 -13.75734 -13.38166 -13.10150 -12.69844 -12.39588 -12.06219 -11.98850 -11.88437 -11.62699 -11.48937 -11.14885 -11.03015 -10.78242 -10.63964 -10.58156 -10.44438 -10.32696 -9.83115 -9.65106 -9.30140 -9.19473 -8.82621 -8.51144 -7.49799 -6.88942 -6.65592 -4.27890 1.57121 2.75559 3.08830 3.10132 3.12122 3.18108 3.82169 3.92932 3.97959 4.71520 4.78820 4.91764 5.25640 5.31686 5.49849 5.56102 5.72270 5.81772 5.92264 6.05156 6.11538 6.16900 6.19168 6.33825 6.39155 6.44787 6.50840 6.65436 6.83211 6.85133 6.94230 7.05740 7.07866 7.21457 7.33084 7.63050 7.73943 8.01985 8.08296 8.26079 8.38230 8.66383 8.87552 8.92551 9.05776 10.27258 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027438 B = 0.004414 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.242646 B = 6341.599640 C = 7071.047014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.038 4.038 3 C -0.141 4.141 4 C -0.119 4.119 5 C -0.060 4.060 6 C -0.217 4.217 7 C 0.511 3.489 8 O -0.501 6.501 9 N -0.651 5.651 10 C 0.004 3.996 11 C -0.087 4.087 12 C -0.149 4.149 13 C 0.105 3.895 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.072 3.928 17 N -0.798 5.798 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.211 4.211 23 C -0.110 4.110 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.392 0.608 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.280 0.720 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.897 7.031 8.563 13.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.038 4.038 3 C -0.198 4.198 4 C -0.176 4.176 5 C -0.079 4.079 6 C -0.238 4.238 7 C 0.301 3.699 8 O -0.379 6.379 9 N -0.293 5.293 10 C -0.089 4.089 11 C -0.107 4.107 12 C -0.168 4.168 13 C 0.102 3.898 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.424 5.424 18 Si 0.735 3.265 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.231 4.231 23 C -0.130 4.130 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.225 0.775 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.422 7.674 7.771 13.204 hybrid contribution -0.192 -0.658 -0.052 0.688 sum 7.230 7.015 7.719 12.691 Atomic orbital electron populations 1.21911 0.92454 0.98885 1.03210 1.19667 0.96965 0.93819 0.93345 1.22012 1.00351 0.95847 1.01586 1.22157 0.98426 1.01061 0.95971 1.23815 0.93351 0.94340 0.96433 1.22624 1.03615 0.95979 1.01559 1.18450 0.83186 0.82323 0.85947 1.90958 1.48675 1.65681 1.32623 1.42937 1.44185 1.07652 1.34574 1.17177 0.93588 0.93909 1.04181 1.20414 0.92783 0.98469 0.99049 1.21037 1.00316 0.96602 0.98891 1.17664 0.90338 0.92008 0.89794 1.19493 1.18752 0.94711 1.16262 0.90600 1.25899 0.97189 0.94765 0.96594 1.69816 1.34842 1.08276 1.29467 0.86334 0.80893 0.79772 0.79465 1.18929 1.20373 1.19101 1.20598 0.96643 1.00381 1.05506 1.20074 0.98649 0.94297 0.99951 0.95541 0.91774 0.91919 0.93054 0.92459 0.93009 0.91139 0.92102 0.95568 0.86292 0.86071 0.77482 0.88156 0.86091 0.90888 0.88719 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 7.59 37.16 0.28 -1.37 16 2 C -0.04 -0.51 0.75 -155.66 -0.12 -0.63 16 3 C -0.14 -1.53 8.02 37.16 0.30 -1.23 16 4 C -0.12 -1.86 7.52 37.16 0.28 -1.58 16 5 C -0.06 -0.71 8.52 -36.11 -0.31 -1.02 16 6 C -0.22 -2.78 9.48 -37.82 -0.36 -3.14 16 7 C 0.51 8.73 5.58 -12.69 -0.07 8.66 16 8 O -0.50 -9.93 6.17 5.25 0.03 -9.90 16 9 N -0.65 -11.39 5.29 -10.82 -0.06 -11.45 16 10 C 0.00 0.09 6.25 -83.61 -0.52 -0.44 16 11 C -0.09 -2.13 8.57 -39.78 -0.34 -2.47 16 12 C -0.15 -3.96 8.60 -39.26 -0.34 -4.30 16 13 C 0.10 2.81 5.55 -106.80 -0.59 2.22 16 14 C -0.46 -12.36 9.04 -37.86 -0.34 -12.70 16 15 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 16 C 0.07 1.85 5.25 -17.33 -0.09 1.76 16 17 N -0.80 -21.25 10.84 55.55 0.60 -20.65 16 18 Si 0.91 18.98 29.57 -169.99 -5.03 13.95 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 C -0.21 -5.15 9.74 -39.26 -0.38 -5.53 16 23 C -0.11 -2.41 9.90 -39.78 -0.39 -2.81 16 24 H 0.03 0.35 7.73 -51.93 -0.40 -0.05 16 25 H 0.06 1.11 6.86 -51.93 -0.36 0.76 16 26 H 0.06 1.07 5.61 -51.93 -0.29 0.77 16 27 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.07 1.24 4.68 -51.93 -0.24 0.99 16 31 H 0.06 1.06 7.14 -51.93 -0.37 0.69 16 32 H 0.03 0.36 7.80 -51.93 -0.41 -0.05 16 33 H 0.12 1.07 8.00 -52.49 -0.42 0.65 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.39 5.43 8.80 -40.82 -0.36 5.07 16 36 H 0.10 2.43 6.53 -52.48 -0.34 2.08 16 37 H 0.12 3.36 6.22 -52.48 -0.33 3.04 16 38 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -28.87 317.64 -8.26 -37.13 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.60 Total: 10.71 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -3.00 Total: -24.58 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.54 Total: -32.10 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.03 Total: -9.90 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.87 -8.26 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491688054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.925 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds