Wall clock time and date at job start Mon Mar 30 2020 01:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.53001 * 109.47292 * 239.99515 * 2 1 3 5 5 C 1.50704 * 109.46948 * 119.99711 * 2 1 3 6 6 C 1.33039 * 119.99738 * 67.11154 * 5 2 1 7 7 C 1.47039 * 120.00283 * 353.26048 * 6 5 2 8 8 O 1.21626 * 119.99915 * 358.43209 * 7 6 5 9 9 N 1.34781 * 120.00019 * 178.42954 * 7 6 5 10 10 C 1.39103 * 119.99565 * 175.14898 * 9 7 6 11 11 C 1.39517 * 119.83689 * 324.48944 * 10 9 7 12 12 C 1.36357 * 120.16376 * 179.76067 * 11 10 9 13 13 C 1.40880 * 119.83469 * 0.52393 * 12 11 10 14 14 C 1.41131 * 120.16417 * 179.71581 * 13 12 11 15 15 H 1.07998 * 119.99535 * 209.00175 * 14 13 12 16 16 C 1.39912 * 119.99971 * 29.00565 * 14 13 12 17 17 N 1.30872 * 119.99920 * 10.54947 * 16 14 13 18 18 Si 1.86796 * 119.99765 * 190.54974 * 16 14 13 19 19 H 1.48504 * 109.47308 * 60.00255 * 18 16 14 20 20 H 1.48510 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47330 * 299.99938 * 18 16 14 22 22 C 1.40890 * 119.67523 * 359.73398 * 13 12 11 23 23 C 1.36355 * 119.83053 * 0.02562 * 22 13 12 24 24 H 1.09004 * 109.46581 * 336.58825 * 1 2 3 25 25 H 1.08998 * 109.47031 * 96.58843 * 1 2 3 26 26 H 1.09004 * 109.47392 * 216.59388 * 1 2 3 27 27 H 1.09004 * 109.46869 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.46937 * 299.99588 * 3 2 1 29 29 H 1.08999 * 109.47213 * 60.00234 * 3 2 1 30 30 H 1.08996 * 109.47425 * 269.10623 * 4 2 1 31 31 H 1.09005 * 109.46412 * 29.10525 * 4 2 1 32 32 H 1.08993 * 109.46905 * 149.10043 * 4 2 1 33 33 H 1.08000 * 120.00294 * 247.38682 * 5 2 1 34 34 H 1.08001 * 120.00050 * 173.25842 * 6 5 2 35 35 H 0.96994 * 120.00278 * 355.14839 * 9 7 6 36 36 H 1.08004 * 119.91967 * 0.03515 * 11 10 9 37 37 H 1.08006 * 120.08617 * 180.23534 * 12 11 10 38 38 H 0.96996 * 120.00031 * 179.97438 * 17 16 14 39 39 H 1.07995 * 120.08445 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.91806 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.8315 -2.0179 1.3723 7 6 0.9938 -2.7422 0.4050 8 8 0.4613 -2.1411 -0.5084 9 7 0.8162 -4.0724 0.5306 10 6 -0.0555 -4.7411 -0.3226 11 6 -1.2246 -4.1127 -0.7525 12 6 -2.0814 -4.7602 -1.5927 13 6 -1.7891 -6.0711 -2.0178 14 6 -2.6741 -6.7500 -2.8826 15 1 -2.7411 -7.8274 -2.8493 16 6 -3.4643 -6.0273 -3.7831 17 7 -3.2404 -4.7519 -3.9725 18 14 -4.8387 -6.8829 -4.7147 19 1 -5.8173 -7.4437 -3.7487 20 1 -5.5209 -5.9044 -5.5994 21 1 -4.2704 -7.9809 -5.5373 22 6 -0.6093 -6.7013 -1.5752 23 6 0.2404 -6.0394 -0.7390 24 1 -0.3632 0.9431 0.4084 25 1 -0.3633 -0.1179 -1.0209 26 1 -0.3634 -0.8251 0.6126 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.1763 -1.7798 -1.0274 31 1 1.3145 -0.6094 -2.0550 32 1 2.9925 -0.2886 -1.5551 33 1 2.5514 -0.1573 1.9994 34 1 2.2838 -2.5473 2.1979 35 1 1.2962 -4.5633 1.2157 36 1 -1.4493 -3.1091 -0.4225 37 1 -2.9842 -4.2711 -1.9277 38 1 -3.7880 -4.2509 -4.5970 39 1 -0.3790 -7.7062 -1.8966 40 1 1.1450 -6.5213 -0.3985 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491688054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:36 Heat of formation + Delta-G solvation = 6.930086 kcal Electronic energy + Delta-G solvation = -20951.646026 eV Core-core repulsion = 17924.784248 eV Total energy + Delta-G solvation = -3026.861779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.65715 -39.57242 -37.72013 -35.92233 -34.65821 -32.63835 -31.40146 -30.67129 -28.15206 -28.03175 -27.05011 -24.52274 -23.16657 -22.38017 -21.32535 -19.47726 -19.20345 -17.98403 -17.68824 -17.00468 -16.42855 -15.87885 -15.74471 -15.25263 -15.04699 -14.75757 -14.60000 -14.32810 -13.90553 -13.72904 -13.57558 -13.30845 -13.01715 -12.87521 -12.75991 -12.62147 -12.33211 -12.17271 -11.80600 -11.77001 -11.64039 -11.46592 -11.43220 -11.13015 -10.40549 -10.26637 -10.08225 -9.42996 -8.73474 -8.55127 -6.27768 0.45884 0.98565 1.14906 1.37500 1.49853 1.51568 2.21595 2.45864 2.58022 2.84281 3.73865 3.76948 3.91907 4.18653 4.23707 4.44248 4.46286 4.49272 4.65714 4.80752 4.84871 4.94162 4.95615 5.01652 5.12121 5.19456 5.22845 5.25168 5.30447 5.34422 5.37924 5.50363 5.53353 5.58321 5.69908 5.77817 5.94047 6.10414 6.16536 6.37608 6.70021 6.88582 6.94945 7.03422 7.58280 8.38907 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027438 B = 0.004414 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.242646 B = 6341.599640 C = 7071.047014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.043 4.043 3 C -0.135 4.135 4 C -0.114 4.114 5 C -0.044 4.044 6 C -0.222 4.222 7 C 0.502 3.498 8 O -0.535 6.535 9 N -0.647 5.647 10 C 0.023 3.977 11 C -0.099 4.099 12 C -0.172 4.172 13 C 0.070 3.930 14 C -0.499 4.499 15 H 0.079 0.921 16 C 0.028 3.972 17 N -0.839 5.839 18 Si 0.986 3.014 19 H -0.258 1.258 20 H -0.272 1.272 21 H -0.258 1.258 22 C -0.219 4.219 23 C -0.108 4.108 24 H 0.045 0.955 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.045 0.955 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.414 0.586 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.108 0.892 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.079 7.418 10.575 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.043 4.043 3 C -0.192 4.192 4 C -0.171 4.171 5 C -0.063 4.063 6 C -0.242 4.242 7 C 0.294 3.706 8 O -0.415 6.415 9 N -0.293 5.293 10 C -0.070 4.070 11 C -0.119 4.119 12 C -0.192 4.192 13 C 0.068 3.932 14 C -0.529 4.529 15 H 0.098 0.902 16 C -0.185 4.185 17 N -0.466 5.466 18 Si 0.807 3.193 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.182 1.182 22 C -0.239 4.239 23 C -0.128 4.128 24 H 0.064 0.936 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.251 0.749 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.641 8.059 9.823 15.950 hybrid contribution -0.737 -0.659 -0.596 1.154 sum 8.904 7.400 9.228 14.805 Atomic orbital electron populations 1.21798 0.94434 0.98953 1.00665 1.19694 0.95350 0.95855 0.93404 1.21965 1.01445 0.93582 1.02246 1.22053 0.98440 1.00256 0.96344 1.24136 0.92118 0.94071 0.96019 1.22693 1.03682 0.96234 1.01596 1.19351 0.83027 0.81971 0.86204 1.90985 1.49968 1.66243 1.34268 1.42886 1.43723 1.08115 1.34567 1.17247 0.92833 0.93927 1.03042 1.20439 0.93862 0.98269 0.99358 1.20925 1.00424 0.97314 1.00548 1.17991 0.91882 0.92418 0.90942 1.19783 1.20524 0.95085 1.17514 0.90244 1.26819 0.99269 0.95278 0.97150 1.69921 1.36200 1.09942 1.30568 0.85195 0.77404 0.78657 0.78061 1.18246 1.19635 1.18179 1.20864 0.96202 1.01093 1.05738 1.20430 0.99465 0.94101 0.98809 0.93587 0.95267 0.93948 0.91226 0.93201 0.91084 0.93215 0.95422 0.93668 0.81761 0.82036 0.74900 0.88871 0.88581 0.90562 0.87412 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.14 7.59 71.98 0.55 -2.59 16 2 C -0.04 -1.08 0.75 -52.93 -0.04 -1.12 16 3 C -0.14 -2.49 8.02 71.98 0.58 -1.92 16 4 C -0.11 -3.54 7.52 71.98 0.54 -3.00 16 5 C -0.04 -0.87 8.52 24.53 0.21 -0.66 16 6 C -0.22 -4.88 9.48 23.42 0.22 -4.65 16 7 C 0.50 16.59 5.58 86.55 0.48 17.08 16 8 O -0.53 -21.74 6.17 -4.11 -0.03 -21.76 16 9 N -0.65 -21.57 5.29 -306.40 -1.62 -23.19 16 10 C 0.02 1.02 6.25 38.61 0.24 1.27 16 11 C -0.10 -5.07 8.57 22.14 0.19 -4.88 16 12 C -0.17 -9.76 8.60 22.48 0.19 -9.56 16 13 C 0.07 3.93 5.55 -21.27 -0.12 3.81 16 14 C -0.50 -27.81 9.04 23.39 0.21 -27.60 16 15 H 0.08 4.18 7.87 -2.91 -0.02 4.16 16 16 C 0.03 1.46 5.25 85.24 0.45 1.91 16 17 N -0.84 -47.22 10.84 21.82 0.24 -46.98 16 18 Si 0.99 39.98 29.57 68.60 2.03 42.01 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 22 C -0.22 -10.76 9.74 22.48 0.22 -10.55 16 23 C -0.11 -4.63 9.90 22.14 0.22 -4.41 16 24 H 0.05 1.20 7.73 -2.38 -0.02 1.18 16 25 H 0.03 1.07 6.86 -2.39 -0.02 1.06 16 26 H 0.04 1.46 5.61 -2.39 -0.01 1.44 16 27 H 0.07 1.06 8.11 -2.38 -0.02 1.04 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.05 1.73 4.68 -2.39 -0.01 1.72 16 31 H 0.03 1.00 7.14 -2.38 -0.02 0.98 16 32 H 0.04 1.18 7.80 -2.39 -0.02 1.17 16 33 H 0.17 1.88 8.00 -2.91 -0.02 1.85 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.41 10.13 8.80 -92.71 -0.82 9.32 16 36 H 0.09 4.80 6.53 -2.91 -0.02 4.78 16 37 H 0.10 5.81 6.22 -2.91 -0.02 5.79 16 38 H 0.28 14.64 8.30 -92.71 -0.77 13.88 16 39 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -68.39 317.64 4.99 -63.40 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.23 Total: 33.40 kcal Atomic # 6 Polarization: -51.01 SS G_CDS: 4.14 Total: -46.87 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -1.39 Total: -70.18 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.03 Total: -21.76 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -68.39 4.99 -63.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491688054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.332 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds