Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47042 * 2 1 4 4 H 1.08999 * 109.47426 * 55.00546 * 3 2 1 5 5 C 1.50706 * 109.47267 * 175.00325 * 3 2 1 6 6 H 1.07999 * 120.00204 * 119.99764 * 5 3 2 7 7 C 1.37871 * 119.99655 * 299.72766 * 5 3 2 8 8 N 1.31515 * 120.00323 * 0.27278 * 7 5 3 9 9 Si 1.86800 * 120.00083 * 180.27303 * 7 5 3 10 10 H 1.48500 * 109.47176 * 89.99757 * 9 7 5 11 11 H 1.48500 * 109.47687 * 210.00115 * 9 7 5 12 12 H 1.48503 * 109.46822 * 329.99984 * 9 7 5 13 13 N 1.46502 * 109.47418 * 295.00433 * 3 2 1 14 14 C 1.34770 * 120.00272 * 84.99658 * 13 3 2 15 15 O 1.21698 * 120.00019 * 0.02562 * 14 13 3 16 16 C 1.46429 * 120.00095 * 180.02562 * 14 13 3 17 17 C 1.34814 * 119.99792 * 186.67996 * 16 14 13 18 18 C 1.47206 * 119.99965 * 11.64564 * 17 16 14 19 19 C 1.39851 * 120.17703 * 46.30699 * 18 17 16 20 20 C 1.37868 * 119.83255 * 179.97438 * 19 18 17 21 21 C 1.38425 * 120.16879 * 359.97438 * 20 19 18 22 22 C 1.38379 * 120.34408 * 359.97438 * 21 20 19 23 23 C 1.50707 * 119.91544 * 180.02562 * 22 21 20 24 24 C 1.37921 * 120.17319 * 359.78795 * 22 21 20 25 25 H 1.09005 * 109.47058 * 299.99416 * 1 2 3 26 26 H 1.09000 * 109.47775 * 59.99980 * 1 2 3 27 27 H 1.08998 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46966 * 240.00252 * 2 1 3 29 29 H 1.08996 * 109.47327 * 120.00602 * 2 1 3 30 30 H 0.97003 * 120.00230 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99791 * 265.00233 * 13 3 2 32 32 H 1.07997 * 120.00316 * 6.68300 * 16 14 13 33 33 H 1.07998 * 119.99777 * 191.63351 * 17 16 14 34 34 H 1.08004 * 120.08058 * 359.95832 * 19 18 17 35 35 H 1.07988 * 119.91793 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.83238 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.46642 * 89.99915 * 23 22 21 38 38 H 1.08994 * 109.47211 * 209.99998 * 23 22 21 39 39 H 1.08997 * 109.47185 * 330.00523 * 23 22 21 40 40 H 1.07994 * 120.08722 * 180.23572 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1430 0.8834 1.2305 8 7 3.4060 0.3420 2.1757 9 14 6.0044 0.8925 1.3876 10 1 6.4360 2.1287 2.0880 11 1 6.4414 -0.2950 2.1649 12 1 6.6155 0.8509 0.0348 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3420 2.6325 -0.4308 16 6 0.0474 3.3186 -2.6182 17 6 -1.1128 4.0014 -2.6906 18 6 -1.8635 4.3093 -1.4623 19 6 -1.2001 4.8213 -0.3427 20 6 -1.9102 5.1076 0.8038 21 6 -3.2765 4.8901 0.8484 22 6 -3.9403 4.3847 -0.2557 23 6 -5.4282 4.1522 -0.1967 24 6 -3.2447 4.0979 -1.4115 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8290 -0.0523 2.9545 31 1 2.2718 2.1232 -1.9978 32 1 0.6909 3.2542 -3.4831 33 1 -1.4914 4.3225 -3.6497 34 1 -0.1341 4.9916 -0.3761 35 1 -1.3994 5.5034 1.6690 36 1 -3.8275 5.1167 1.7491 37 1 -5.9497 5.0523 -0.5222 38 1 -5.6925 3.3222 -0.8518 39 1 -5.7185 3.9141 0.8266 40 1 -3.7648 3.7071 -2.2735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492622904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -1.006422 kcal Electronic energy + Delta-G solvation = -20916.300005 eV Core-core repulsion = 17889.094074 eV Total energy + Delta-G solvation = -3027.205932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.56811 -38.37802 -35.26266 -33.62381 -32.38599 -31.97034 -30.92936 -29.47385 -27.02007 -26.55308 -23.90460 -22.70715 -21.80130 -20.83989 -19.41401 -18.79689 -17.10957 -16.16684 -15.92620 -15.21502 -15.02949 -14.51685 -14.26997 -13.97403 -13.74916 -13.36858 -13.08402 -12.83046 -12.61280 -12.29579 -12.15876 -11.92920 -11.70869 -11.44920 -11.22448 -10.94992 -10.84286 -10.81167 -10.75212 -10.28683 -10.13245 -9.60202 -9.52417 -9.03919 -8.98285 -8.48715 -8.40080 -7.78750 -7.59448 -6.10896 -4.20270 1.10770 1.81630 2.20316 3.24705 3.31596 3.33293 4.06559 4.16279 4.21920 4.45349 4.91008 5.07601 5.16434 5.20414 5.39283 5.40797 5.52455 5.64088 5.65605 5.76852 5.89921 5.95083 6.27825 6.30539 6.43281 6.45113 6.50822 6.51922 6.71555 6.83774 6.88360 6.98169 7.09025 7.25424 7.36884 7.41791 7.51907 7.65072 7.78580 7.93769 8.21006 8.73757 8.81750 9.22737 9.47897 10.94319 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.004471 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.606577 B = 6260.439104 C = 6420.104764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.520 3.480 15 O -0.532 6.532 16 C -0.195 4.195 17 C -0.051 4.051 18 C -0.051 4.051 19 C -0.041 4.041 20 C -0.124 4.124 21 C -0.115 4.115 22 C -0.105 4.105 23 C -0.108 4.108 24 C -0.106 4.106 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.020 0.980 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.986 7.633 -7.999 15.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.307 3.693 15 O -0.412 6.412 16 C -0.216 4.216 17 C -0.070 4.070 18 C -0.051 4.051 19 C -0.059 4.059 20 C -0.143 4.143 21 C -0.133 4.133 22 C -0.105 4.105 23 C -0.165 4.165 24 C -0.124 4.124 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.484 7.473 -7.108 15.435 hybrid contribution 1.504 -0.243 -0.292 1.552 sum -9.979 7.230 -7.401 14.374 Atomic orbital electron populations 1.21819 0.98251 0.97842 1.01314 1.21918 0.92654 0.99854 1.02089 1.18747 0.94022 0.89153 0.81128 0.93321 1.21249 0.90854 1.39068 1.06103 0.92173 1.24879 0.98508 0.94827 0.95425 1.69900 1.35086 1.37736 1.09214 0.86480 0.85000 0.77632 0.78171 1.20596 1.21088 1.19873 1.46498 1.14452 1.55687 1.18369 1.18327 0.82932 0.80258 0.87827 1.90865 1.50710 1.59702 1.39974 1.23321 0.98082 1.01148 0.99074 1.22239 0.93266 0.94931 0.96599 1.18782 0.92915 0.99535 0.93887 1.21042 0.98565 0.94568 0.91766 1.20910 0.94088 1.01390 0.97863 1.20963 0.94562 1.00168 0.97606 1.19630 0.95705 1.01006 0.94177 1.20713 0.92039 1.01420 1.02301 1.20941 0.93008 1.00929 0.97558 0.93210 0.94165 0.96125 0.95197 0.88454 0.92611 0.78115 0.85656 0.85414 0.86891 0.86541 0.86891 0.91823 0.91965 0.91925 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -24.79 11.30 55.43 0.63 -24.16 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.70 -14.47 5.02 -56.33 -0.28 -14.75 16 14 C 0.52 10.12 5.45 -12.97 -0.07 10.05 16 15 O -0.53 -11.86 9.53 5.19 0.05 -11.81 16 16 C -0.20 -2.88 9.91 -37.50 -0.37 -3.26 16 17 C -0.05 -0.69 9.79 -37.15 -0.36 -1.05 16 18 C -0.05 -0.80 4.40 -105.06 -0.46 -1.27 16 19 C -0.04 -0.70 6.73 -39.11 -0.26 -0.96 16 20 C -0.12 -1.99 10.03 -39.65 -0.40 -2.39 16 21 C -0.11 -1.67 9.69 -39.46 -0.38 -2.06 16 22 C -0.11 -1.47 5.87 -104.68 -0.61 -2.08 16 23 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 24 C -0.11 -1.54 9.44 -39.11 -0.37 -1.91 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 26 H 0.04 0.90 5.65 -51.93 -0.29 0.61 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.65 5.96 -51.93 -0.31 2.34 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.39 6.97 8.52 -40.82 -0.35 6.62 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.11 2.00 7.31 -52.48 -0.38 1.62 16 35 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -30.16 328.05 -8.90 -39.06 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.90 Total: 8.90 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.31 Total: -17.78 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.34 Total: -38.91 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.05 Total: -11.81 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.16 -8.90 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492622904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.054 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds