Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47042 * 2 1 4 4 H 1.08999 * 109.47426 * 55.00546 * 3 2 1 5 5 C 1.50706 * 109.47267 * 175.00325 * 3 2 1 6 6 H 1.07999 * 120.00204 * 119.99764 * 5 3 2 7 7 C 1.37871 * 119.99655 * 299.72766 * 5 3 2 8 8 N 1.31515 * 120.00323 * 0.27278 * 7 5 3 9 9 Si 1.86800 * 120.00083 * 180.27303 * 7 5 3 10 10 H 1.48500 * 109.47176 * 89.99757 * 9 7 5 11 11 H 1.48500 * 109.47687 * 210.00115 * 9 7 5 12 12 H 1.48503 * 109.46822 * 329.99984 * 9 7 5 13 13 N 1.46502 * 109.47418 * 295.00433 * 3 2 1 14 14 C 1.34770 * 120.00272 * 84.99658 * 13 3 2 15 15 O 1.21698 * 120.00019 * 0.02562 * 14 13 3 16 16 C 1.46429 * 120.00095 * 180.02562 * 14 13 3 17 17 C 1.34814 * 119.99792 * 186.67996 * 16 14 13 18 18 C 1.47206 * 119.99965 * 11.64564 * 17 16 14 19 19 C 1.39851 * 120.17703 * 46.30699 * 18 17 16 20 20 C 1.37868 * 119.83255 * 179.97438 * 19 18 17 21 21 C 1.38425 * 120.16879 * 359.97438 * 20 19 18 22 22 C 1.38379 * 120.34408 * 359.97438 * 21 20 19 23 23 C 1.50707 * 119.91544 * 180.02562 * 22 21 20 24 24 C 1.37921 * 120.17319 * 359.78795 * 22 21 20 25 25 H 1.09005 * 109.47058 * 299.99416 * 1 2 3 26 26 H 1.09000 * 109.47775 * 59.99980 * 1 2 3 27 27 H 1.08998 * 109.47496 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46966 * 240.00252 * 2 1 3 29 29 H 1.08996 * 109.47327 * 120.00602 * 2 1 3 30 30 H 0.97003 * 120.00230 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99791 * 265.00233 * 13 3 2 32 32 H 1.07997 * 120.00316 * 6.68300 * 16 14 13 33 33 H 1.07998 * 119.99777 * 191.63351 * 17 16 14 34 34 H 1.08004 * 120.08058 * 359.95832 * 19 18 17 35 35 H 1.07988 * 119.91793 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.83238 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.46642 * 89.99915 * 23 22 21 38 38 H 1.08994 * 109.47211 * 209.99998 * 23 22 21 39 39 H 1.08997 * 109.47185 * 330.00523 * 23 22 21 40 40 H 1.07994 * 120.08722 * 180.23572 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1430 0.8834 1.2305 8 7 3.4060 0.3420 2.1757 9 14 6.0044 0.8925 1.3876 10 1 6.4360 2.1287 2.0880 11 1 6.4414 -0.2950 2.1649 12 1 6.6155 0.8509 0.0348 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3420 2.6325 -0.4308 16 6 0.0474 3.3186 -2.6182 17 6 -1.1128 4.0014 -2.6906 18 6 -1.8635 4.3093 -1.4623 19 6 -1.2001 4.8213 -0.3427 20 6 -1.9102 5.1076 0.8038 21 6 -3.2765 4.8901 0.8484 22 6 -3.9403 4.3847 -0.2557 23 6 -5.4282 4.1522 -0.1967 24 6 -3.2447 4.0979 -1.4115 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8290 -0.0523 2.9545 31 1 2.2718 2.1232 -1.9978 32 1 0.6909 3.2542 -3.4831 33 1 -1.4914 4.3225 -3.6497 34 1 -0.1341 4.9916 -0.3761 35 1 -1.3994 5.5034 1.6690 36 1 -3.8275 5.1167 1.7491 37 1 -5.9497 5.0523 -0.5222 38 1 -5.6925 3.3222 -0.8518 39 1 -5.7185 3.9141 0.8266 40 1 -3.7648 3.7071 -2.2735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492622904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -17.977544 kcal Electronic energy + Delta-G solvation = -20917.035928 eV Core-core repulsion = 17889.094074 eV Total energy + Delta-G solvation = -3027.941855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95852 -39.71646 -37.01768 -34.89309 -34.23978 -33.17147 -32.71010 -30.71376 -28.91672 -27.58675 -25.51611 -24.36577 -23.01321 -22.26074 -21.24223 -20.24017 -18.61843 -17.77199 -17.33902 -16.94797 -16.30566 -16.11288 -15.84151 -15.37942 -14.92942 -14.64051 -14.50204 -14.25970 -14.00888 -13.66842 -13.55676 -13.34736 -13.16124 -13.00076 -12.91039 -12.72072 -12.67940 -12.15498 -12.03576 -11.94169 -11.86879 -11.57895 -11.04048 -10.70600 -10.59571 -10.42572 -9.68052 -9.35380 -8.90130 -8.15971 -6.33321 -0.06344 0.64253 1.03675 1.43657 1.43709 1.54510 2.37456 2.61978 2.84675 3.00016 3.13612 3.85308 4.03375 4.07488 4.20458 4.28953 4.49027 4.52823 4.57601 4.58672 4.62285 4.77526 4.82542 4.89155 5.02380 5.06728 5.17015 5.21837 5.25721 5.38245 5.40758 5.45646 5.57384 5.65921 5.67960 5.76471 5.79972 5.83431 6.00127 6.18844 6.23845 6.76201 7.12719 7.34991 7.72546 8.89209 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.004471 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.606577 B = 6260.439104 C = 6420.104764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.513 3.487 15 O -0.566 6.566 16 C -0.209 4.209 17 C -0.029 4.029 18 C -0.069 4.069 19 C -0.067 4.067 20 C -0.146 4.146 21 C -0.126 4.126 22 C -0.109 4.109 23 C -0.105 4.105 24 C -0.113 4.113 25 H 0.022 0.978 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 7.852 -10.416 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.014 0.986 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.353 5.353 14 C 0.303 3.697 15 O -0.448 6.448 16 C -0.229 4.229 17 C -0.048 4.048 18 C -0.069 4.069 19 C -0.085 4.085 20 C -0.164 4.164 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.162 4.162 24 C -0.131 4.131 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.235 0.765 32 H 0.181 0.819 33 H 0.193 0.807 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.282 7.709 -9.565 17.372 hybrid contribution 1.630 -0.243 0.512 1.726 sum -10.652 7.466 -9.053 15.848 Atomic orbital electron populations 1.21623 0.96948 0.98735 1.00179 1.21763 0.93699 0.99382 1.00976 1.18258 0.93321 0.88970 0.81590 0.98644 1.21612 0.91677 1.38891 1.06488 0.91206 1.25761 1.03225 0.94401 0.95059 1.70059 1.37027 1.38553 1.09745 0.85403 0.79273 0.77408 0.78603 1.20478 1.20956 1.18428 1.46263 1.15597 1.56170 1.17299 1.19139 0.81891 0.79555 0.89162 1.90857 1.51537 1.60663 1.41739 1.23278 0.99505 1.02458 0.97691 1.22706 0.91871 0.92704 0.97525 1.19127 0.93947 0.99467 0.94373 1.21013 0.97728 0.96594 0.93172 1.21100 0.95252 1.02187 0.97839 1.21260 0.94022 1.00162 0.98957 1.20121 0.97684 0.99490 0.93623 1.20767 0.89521 1.02773 1.03130 1.21325 0.92596 1.00419 0.98732 0.95889 0.93629 0.94050 0.94287 0.91322 0.92694 0.76493 0.81874 0.80664 0.89086 0.86674 0.84932 0.89813 0.90937 0.91338 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.85 16 2 C -0.12 -6.01 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.65 2.24 44.24 0.10 14.75 16 4 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 5 C -0.55 -29.38 8.73 25.60 0.22 -29.16 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.84 5.30 84.65 0.45 1.29 16 8 N -0.92 -53.14 11.30 21.45 0.24 -52.90 16 9 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 N -0.70 -29.26 5.02 -450.33 -2.26 -31.52 16 14 C 0.51 20.05 5.45 86.38 0.47 20.52 16 15 O -0.57 -26.04 9.53 -4.34 -0.04 -26.08 16 16 C -0.21 -5.72 9.91 23.62 0.23 -5.48 16 17 C -0.03 -0.70 9.79 23.84 0.23 -0.47 16 18 C -0.07 -2.10 4.40 -20.15 -0.09 -2.19 16 19 C -0.07 -2.35 6.73 22.57 0.15 -2.20 16 20 C -0.15 -4.88 10.03 22.23 0.22 -4.66 16 21 C -0.13 -3.65 9.69 22.35 0.22 -3.43 16 22 C -0.11 -2.87 5.87 -19.90 -0.12 -2.99 16 23 C -0.11 -1.92 10.01 71.24 0.71 -1.21 16 24 C -0.11 -3.03 9.44 22.58 0.21 -2.81 16 25 H 0.02 1.15 7.84 -2.38 -0.02 1.13 16 26 H 0.04 2.04 5.65 -2.39 -0.01 2.03 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 3.88 5.96 -2.39 -0.01 3.86 16 30 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 31 H 0.40 14.16 8.52 -92.71 -0.79 13.37 16 32 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.09 3.48 7.31 -2.91 -0.02 3.46 16 35 H 0.12 3.66 8.06 -2.92 -0.02 3.64 16 36 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 39 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 40 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -68.54 328.05 4.01 -64.53 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.24 Total: 30.15 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 3.80 Total: -28.73 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.02 Total: -84.42 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.04 Total: -26.08 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -68.54 4.01 -64.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492622904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.557 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds