Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47012 * 2 1 4 4 H 1.08999 * 109.47231 * 305.00516 * 3 2 1 5 5 C 1.50700 * 109.47001 * 185.00162 * 3 2 1 6 6 H 1.07993 * 120.00131 * 240.00067 * 5 3 2 7 7 C 1.37881 * 119.99480 * 60.00375 * 5 3 2 8 8 N 1.31510 * 120.00431 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99521 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47119 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47140 * 119.99775 * 9 7 5 12 12 H 1.48500 * 109.47098 * 240.00093 * 9 7 5 13 13 N 1.46505 * 109.46852 * 65.00272 * 3 2 1 14 14 C 1.34772 * 119.99900 * 274.99925 * 13 3 2 15 15 O 1.21694 * 120.00373 * 359.97438 * 14 13 3 16 16 C 1.46438 * 119.99544 * 179.97438 * 14 13 3 17 17 C 1.34806 * 119.99825 * 173.21446 * 16 14 13 18 18 C 1.47209 * 119.99868 * 349.03937 * 17 16 14 19 19 C 1.39857 * 120.17190 * 136.38707 * 18 17 16 20 20 C 1.37872 * 119.82875 * 179.97438 * 19 18 17 21 21 C 1.38421 * 120.16720 * 359.97438 * 20 19 18 22 22 C 1.38370 * 120.35077 * 359.97438 * 21 20 19 23 23 C 1.50695 * 119.91888 * 180.02562 * 22 21 20 24 24 C 1.37918 * 120.17152 * 359.79296 * 22 21 20 25 25 H 1.08995 * 109.47016 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47739 * 59.99549 * 1 2 3 27 27 H 1.09010 * 109.46965 * 299.99329 * 1 2 3 28 28 H 1.08994 * 109.47216 * 120.00399 * 2 1 3 29 29 H 1.09004 * 109.46555 * 240.00516 * 2 1 3 30 30 H 0.96998 * 120.00144 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99385 * 94.99638 * 13 3 2 32 32 H 1.08000 * 120.00124 * 353.21979 * 16 14 13 33 33 H 1.07999 * 119.99983 * 169.02889 * 17 16 14 34 34 H 1.08006 * 120.08343 * 359.94141 * 19 18 17 35 35 H 1.07995 * 119.91320 * 180.02562 * 20 19 18 36 36 H 1.08010 * 119.82168 * 180.02562 * 21 20 19 37 37 H 1.09004 * 109.47301 * 90.00536 * 23 22 21 38 38 H 1.09000 * 109.47838 * 210.00593 * 23 22 21 39 39 H 1.09005 * 109.47531 * 330.00968 * 23 22 21 40 40 H 1.07994 * 120.09072 * 180.22692 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1431 0.8785 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8813 -1.3820 10 1 6.5987 1.5463 -0.1944 11 1 6.4970 -0.5174 -1.4633 12 1 6.3988 1.6169 -2.6104 13 7 1.6524 2.0975 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3419 2.6326 0.4311 16 6 0.0476 3.3184 2.6186 17 6 -1.1115 4.0029 2.6906 18 6 -1.8684 4.2997 1.4634 19 6 -3.2571 4.1360 1.4372 20 6 -3.9591 4.4166 0.2842 21 6 -3.2928 4.8597 -0.8454 22 6 -1.9192 5.0251 -0.8271 23 6 -1.2039 5.5087 -2.0622 24 6 -1.2035 4.7533 0.3201 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 3.8291 -0.0610 -2.9500 31 1 2.2720 2.1230 1.9978 32 1 0.6905 3.2525 3.4840 33 1 -1.4849 4.3334 3.6486 34 1 -3.7782 3.7902 2.3178 35 1 -5.0315 4.2911 0.2625 36 1 -3.8484 5.0782 -1.7455 37 1 -1.1525 6.5974 -2.0496 38 1 -0.1945 5.0976 -2.0820 39 1 -1.7471 5.1809 -2.9485 40 1 -0.1319 4.8864 0.3340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492622907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = 0.618429 kcal Electronic energy + Delta-G solvation = -21135.125290 eV Core-core repulsion = 18107.989817 eV Total energy + Delta-G solvation = -3027.135473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.61057 -38.33055 -35.24094 -33.63137 -32.35460 -32.04262 -30.92360 -29.27848 -26.97394 -26.59737 -23.96026 -22.81387 -21.49557 -20.84746 -19.45121 -18.90500 -17.06151 -16.16077 -15.92414 -15.22491 -14.99699 -14.56751 -14.31990 -13.84091 -13.66753 -13.27053 -13.11859 -12.74247 -12.62034 -12.25804 -11.95386 -11.90913 -11.65039 -11.46313 -11.23638 -10.96039 -10.85977 -10.79132 -10.71419 -10.28659 -10.14088 -9.61045 -9.58873 -9.04418 -9.00183 -8.48962 -8.25937 -7.78791 -7.58805 -6.11879 -4.21123 1.09043 1.83482 2.24778 3.23161 3.31297 3.33752 4.06045 4.17556 4.21786 4.44737 4.95218 5.14686 5.19348 5.19589 5.41567 5.43454 5.62178 5.68431 5.79005 5.87610 5.95877 6.12401 6.32179 6.39177 6.43008 6.45425 6.50595 6.55344 6.70996 6.80355 6.91611 7.03179 7.08632 7.24816 7.38450 7.41177 7.50940 7.64521 7.77744 7.92882 8.20295 8.72812 8.80984 9.21667 9.47081 10.93356 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.005046 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.813358 B = 5547.332116 C = 5902.671714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.520 3.480 15 O -0.532 6.532 16 C -0.198 4.198 17 C -0.048 4.048 18 C -0.059 4.059 19 C -0.111 4.111 20 C -0.136 4.136 21 C -0.114 4.114 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.026 4.026 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.263 0.737 31 H 0.387 0.613 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 8.078 7.148 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.307 3.693 15 O -0.412 6.412 16 C -0.219 4.219 17 C -0.068 4.068 18 C -0.059 4.059 19 C -0.129 4.129 20 C -0.154 4.154 21 C -0.132 4.132 22 C -0.098 4.098 23 C -0.168 4.168 24 C -0.044 4.044 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.219 0.781 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.883 7.925 6.258 14.129 hybrid contribution 1.375 -0.318 0.359 1.456 sum -8.508 7.607 6.617 13.192 Atomic orbital electron populations 1.21820 0.98241 0.97850 1.01317 1.21925 0.92662 0.99853 1.02106 1.18758 0.94054 0.89160 0.81116 0.93292 1.21283 0.90835 1.38846 1.06203 0.92124 1.24880 0.98505 0.94834 0.95425 1.69905 1.34990 1.37711 1.09346 0.86431 0.85026 0.77770 0.78097 1.19761 1.20899 1.20897 1.46515 1.14435 1.55601 1.18373 1.18334 0.82908 0.80254 0.87847 1.90860 1.50649 1.59652 1.40053 1.23301 0.98214 1.01292 0.99068 1.22240 0.93189 0.94797 0.96590 1.18790 0.92979 1.00348 0.93786 1.21054 0.93054 1.00713 0.98110 1.20814 0.99176 1.01924 0.93501 1.20976 0.93905 1.00401 0.97945 1.19690 0.93686 1.00821 0.95595 1.20737 1.00865 1.00269 0.94883 1.20961 0.98568 0.93784 0.91127 0.96128 0.93200 0.94165 0.95209 0.88428 0.92659 0.78100 0.85669 0.85445 0.86776 0.86799 0.86918 0.91960 0.91221 0.91956 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.67 11.29 55.43 0.63 -24.04 16 9 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.70 -14.36 5.02 -56.32 -0.28 -14.64 16 14 C 0.52 10.05 5.36 -12.96 -0.07 9.98 16 15 O -0.53 -11.74 9.29 5.19 0.05 -11.69 16 16 C -0.20 -2.92 9.91 -37.50 -0.37 -3.29 16 17 C -0.05 -0.66 9.81 -37.16 -0.36 -1.02 16 18 C -0.06 -0.93 4.53 -105.06 -0.48 -1.40 16 19 C -0.11 -1.60 9.80 -39.11 -0.38 -1.98 16 20 C -0.14 -1.89 10.03 -39.65 -0.40 -2.29 16 21 C -0.11 -1.67 9.69 -39.47 -0.38 -2.05 16 22 C -0.10 -1.58 5.87 -104.69 -0.61 -2.19 16 23 C -0.11 -1.59 10.00 36.00 0.36 -1.23 16 24 C -0.03 -0.45 6.25 -39.11 -0.24 -0.69 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.04 0.90 5.65 -51.92 -0.29 0.60 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 6.94 8.52 -40.82 -0.35 6.59 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 39 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.11 2.07 7.04 -52.49 -0.37 1.70 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -29.87 327.44 -8.90 -38.77 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.88 Total: 9.35 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.32 Total: -18.18 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.34 Total: -38.69 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.05 Total: -11.69 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.87 -8.90 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492622907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.385 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds