Wall clock time and date at job start Mon Mar 30 2020 02:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47546 * 2 1 4 4 H 1.09004 * 109.46810 * 304.80347 * 3 2 1 5 5 C 1.50694 * 109.47253 * 184.80393 * 3 2 1 6 6 H 1.07999 * 120.00438 * 274.69640 * 5 3 2 7 7 C 1.37882 * 119.99718 * 94.70034 * 5 3 2 8 8 N 1.31524 * 119.99675 * 184.46030 * 7 5 3 9 9 Si 1.86795 * 120.00266 * 4.46301 * 7 5 3 10 10 H 1.48494 * 109.47416 * 94.36808 * 9 7 5 11 11 H 1.48502 * 109.46855 * 214.37178 * 9 7 5 12 12 H 1.48505 * 109.47091 * 334.36586 * 9 7 5 13 13 N 1.46496 * 109.46874 * 64.80155 * 3 2 1 14 14 C 1.34773 * 120.00453 * 275.00542 * 13 3 2 15 15 O 1.21702 * 119.99792 * 359.97438 * 14 13 3 16 16 C 1.46427 * 120.00232 * 180.02562 * 14 13 3 17 17 C 1.34810 * 119.99974 * 173.86274 * 16 14 13 18 18 C 1.47212 * 120.00093 * 348.16707 * 17 16 14 19 19 C 1.39851 * 120.16992 * 314.53288 * 18 17 16 20 20 C 1.37871 * 119.82779 * 179.80539 * 19 18 17 21 21 C 1.38423 * 120.16697 * 0.45459 * 20 19 18 22 22 C 1.38382 * 120.34648 * 359.77398 * 21 20 19 23 23 C 1.37915 * 120.16919 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.08315 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46955 * 59.99776 * 1 2 3 27 27 H 1.08996 * 109.46736 * 299.99788 * 1 2 3 28 28 H 1.09002 * 109.47470 * 120.00327 * 2 1 3 29 29 H 1.09009 * 109.46917 * 240.00003 * 2 1 3 30 30 H 0.96997 * 119.99813 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00240 * 95.00411 * 13 3 2 32 32 H 1.07994 * 120.00184 * 353.85370 * 16 14 13 33 33 H 1.08000 * 119.99979 * 168.17429 * 17 16 14 34 34 H 1.08004 * 120.08795 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.91495 * 180.20505 * 20 19 18 36 36 H 1.08002 * 119.82380 * 179.76167 * 21 20 19 37 37 H 1.07997 * 119.91478 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.47511 * 269.97520 * 24 23 22 39 39 H 1.08995 * 109.47359 * 29.98334 * 24 23 22 40 40 H 1.09004 * 109.46604 * 149.97749 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6082 1.9805 -0.8439 5 6 3.5423 1.4440 -0.1190 6 1 4.1542 1.3420 0.7651 7 6 4.1356 1.5758 -1.3566 8 7 5.4430 1.4893 -1.4716 9 14 3.0828 1.8772 -2.8699 10 1 3.0001 3.3363 -3.1328 11 1 3.6927 1.1970 -4.0406 12 1 1.7186 1.3377 -2.6392 13 7 1.6484 2.0988 1.2498 14 6 0.4308 2.6659 1.3604 15 8 -0.3433 2.6330 0.4219 16 6 0.0396 3.3224 2.6094 17 6 -1.1260 3.9960 2.6805 18 6 -1.8789 4.2960 1.4516 19 6 -1.2163 4.7950 0.3256 20 6 -1.9278 5.0698 -0.8230 21 6 -3.2958 4.8619 -0.8603 22 6 -3.9593 4.3728 0.2512 23 6 -3.2609 4.0893 1.4062 24 6 -3.9854 3.5573 2.6158 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 5.8604 1.5817 -2.3423 31 1 2.2655 2.1254 1.9978 32 1 0.6848 3.2670 3.4737 33 1 -1.5074 4.3155 3.6391 34 1 -0.1496 4.9614 0.3545 35 1 -1.4171 5.4521 -1.6944 36 1 -3.8482 5.0826 -1.7617 37 1 -5.0268 4.2136 0.2145 38 1 -4.3148 4.3899 3.2373 39 1 -4.8514 2.9783 2.2951 40 1 -3.3139 2.9188 3.1898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492626101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:24 Heat of formation + Delta-G solvation = 0.485278 kcal Electronic energy + Delta-G solvation = -21230.597886 eV Core-core repulsion = 18203.456639 eV Total energy + Delta-G solvation = -3027.141247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.74550 -38.48321 -35.33233 -33.57768 -32.38231 -32.32626 -31.43557 -29.43481 -27.52916 -26.64254 -23.97062 -22.70934 -21.59396 -20.94594 -19.58885 -19.09358 -17.39595 -16.44592 -15.83355 -15.42729 -15.14123 -14.82003 -14.23339 -13.95930 -13.84479 -13.36035 -13.24159 -12.88941 -12.76340 -12.37530 -12.25924 -12.22061 -11.87684 -11.84920 -11.68644 -10.96501 -10.87417 -10.80686 -10.63681 -10.59520 -9.99093 -9.80384 -9.66938 -9.18613 -9.09110 -8.70265 -8.39796 -7.90214 -7.75078 -6.23483 -4.26644 1.01776 1.74602 2.15628 3.24560 3.33867 3.42413 3.94810 4.10205 4.16771 4.32555 4.89216 5.00464 5.09184 5.12825 5.27042 5.39528 5.41359 5.58452 5.59958 5.74979 5.83426 5.93728 6.09296 6.12265 6.19570 6.25444 6.29919 6.38749 6.44810 6.69688 6.76215 6.82553 6.83228 6.92150 7.02081 7.05705 7.30032 7.32886 7.40629 7.61616 8.17590 8.62847 8.78311 9.08213 9.39430 10.88330 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.005677 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.447760 B = 4930.993840 C = 5376.060579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.235 3.765 4 H 0.054 0.946 5 C -0.530 4.530 6 H 0.077 0.923 7 C 0.081 3.919 8 N -0.890 5.890 9 Si 0.870 3.130 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.255 1.255 13 N -0.697 5.697 14 C 0.520 3.480 15 O -0.538 6.538 16 C -0.197 4.197 17 C -0.046 4.046 18 C -0.057 4.057 19 C -0.032 4.032 20 C -0.136 4.136 21 C -0.111 4.111 22 C -0.137 4.137 23 C -0.075 4.075 24 C -0.112 4.112 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.267 0.733 31 H 0.392 0.608 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.526 5.701 7.512 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.132 3.868 4 H 0.072 0.928 5 C -0.568 4.568 6 H 0.095 0.905 7 C -0.123 4.123 8 N -0.526 5.526 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.179 1.179 13 N -0.345 5.345 14 C 0.307 3.693 15 O -0.418 6.418 16 C -0.218 4.218 17 C -0.065 4.065 18 C -0.057 4.057 19 C -0.050 4.050 20 C -0.154 4.154 21 C -0.129 4.129 22 C -0.155 4.155 23 C -0.075 4.075 24 C -0.169 4.169 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.225 0.775 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.861 5.642 6.683 18.113 hybrid contribution 0.115 0.006 -0.511 0.524 sum -15.747 5.648 6.172 17.831 Atomic orbital electron populations 1.21880 0.97315 0.98623 1.02117 1.22059 0.93712 0.99541 1.00987 1.19217 0.95184 0.89048 0.83301 0.92801 1.21033 0.88738 1.51683 0.95334 0.90455 1.24933 0.94810 0.93714 0.98831 1.69893 1.09205 1.48625 1.24890 0.86926 0.81702 0.79110 0.82598 1.20113 1.21116 1.17889 1.46593 1.14433 1.55385 1.18044 1.18424 0.82787 0.80124 0.87914 1.90854 1.51075 1.60044 1.39864 1.23282 0.98009 1.01445 0.99047 1.22208 0.93046 0.94658 0.96624 1.18661 0.92317 1.00722 0.93966 1.21070 0.98608 0.93726 0.91632 1.20915 0.94233 1.02251 0.97986 1.21069 0.94633 0.99358 0.97845 1.20736 0.99130 1.02381 0.93276 1.19870 0.92712 0.99211 0.95687 1.20761 0.99929 1.00527 0.95635 0.95388 0.93102 0.93102 0.93175 0.92362 0.92312 0.77534 0.85458 0.85424 0.86786 0.86661 0.86849 0.86793 0.91517 0.91809 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.12 -2.71 5.59 -26.73 -0.15 -2.86 16 3 C 0.24 5.50 1.86 -69.09 -0.13 5.37 16 4 H 0.05 1.38 4.55 -51.93 -0.24 1.15 16 5 C -0.53 -14.14 9.05 -34.44 -0.31 -14.45 16 6 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 7 C 0.08 2.27 5.47 -17.81 -0.10 2.17 16 8 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 9 Si 0.87 21.50 27.28 -169.99 -4.64 16.87 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.25 -6.24 6.41 56.52 0.36 -5.88 16 13 N -0.70 -13.75 5.01 -56.33 -0.28 -14.03 16 14 C 0.52 9.64 5.43 -12.97 -0.07 9.57 16 15 O -0.54 -11.33 9.45 5.19 0.05 -11.28 16 16 C -0.20 -2.78 9.90 -37.50 -0.37 -3.16 16 17 C -0.05 -0.59 8.32 -37.15 -0.31 -0.90 16 18 C -0.06 -0.86 4.44 -105.06 -0.47 -1.32 16 19 C -0.03 -0.53 6.69 -39.11 -0.26 -0.80 16 20 C -0.14 -2.12 10.03 -39.65 -0.40 -2.52 16 21 C -0.11 -1.55 10.04 -39.46 -0.40 -1.95 16 22 C -0.14 -1.84 9.69 -39.65 -0.38 -2.23 16 23 C -0.07 -1.03 5.92 -104.15 -0.62 -1.65 16 24 C -0.11 -1.17 9.57 36.01 0.34 -0.83 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.11 7.83 -51.93 -0.41 0.70 16 27 H 0.05 1.03 5.65 -51.93 -0.29 0.74 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.39 6.88 8.57 -40.82 -0.35 6.53 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.23 7.97 -52.49 -0.42 0.81 16 34 H 0.11 1.99 7.23 -52.48 -0.38 1.61 16 35 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.06 0.68 7.08 -51.93 -0.37 0.32 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -31.01 324.97 -8.35 -39.36 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.85 Total: 7.72 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.30 Total: -18.12 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.49 Total: -39.44 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.05 Total: -11.28 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.64 Total: 16.87 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.01 -8.35 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492626101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.846 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds