Wall clock time and date at job start Mon Mar 30 2020 02:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47546 * 2 1 4 4 H 1.09004 * 109.46810 * 304.80347 * 3 2 1 5 5 C 1.50694 * 109.47253 * 184.80393 * 3 2 1 6 6 H 1.07999 * 120.00438 * 274.69640 * 5 3 2 7 7 C 1.37882 * 119.99718 * 94.70034 * 5 3 2 8 8 N 1.31524 * 119.99675 * 184.46030 * 7 5 3 9 9 Si 1.86795 * 120.00266 * 4.46301 * 7 5 3 10 10 H 1.48494 * 109.47416 * 94.36808 * 9 7 5 11 11 H 1.48502 * 109.46855 * 214.37178 * 9 7 5 12 12 H 1.48505 * 109.47091 * 334.36586 * 9 7 5 13 13 N 1.46496 * 109.46874 * 64.80155 * 3 2 1 14 14 C 1.34773 * 120.00453 * 275.00542 * 13 3 2 15 15 O 1.21702 * 119.99792 * 359.97438 * 14 13 3 16 16 C 1.46427 * 120.00232 * 180.02562 * 14 13 3 17 17 C 1.34810 * 119.99974 * 173.86274 * 16 14 13 18 18 C 1.47212 * 120.00093 * 348.16707 * 17 16 14 19 19 C 1.39851 * 120.16992 * 314.53288 * 18 17 16 20 20 C 1.37871 * 119.82779 * 179.80539 * 19 18 17 21 21 C 1.38423 * 120.16697 * 0.45459 * 20 19 18 22 22 C 1.38382 * 120.34648 * 359.77398 * 21 20 19 23 23 C 1.37915 * 120.16919 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.08315 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47257 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46955 * 59.99776 * 1 2 3 27 27 H 1.08996 * 109.46736 * 299.99788 * 1 2 3 28 28 H 1.09002 * 109.47470 * 120.00327 * 2 1 3 29 29 H 1.09009 * 109.46917 * 240.00003 * 2 1 3 30 30 H 0.96997 * 119.99813 * 179.97438 * 8 7 5 31 31 H 0.97004 * 120.00240 * 95.00411 * 13 3 2 32 32 H 1.07994 * 120.00184 * 353.85370 * 16 14 13 33 33 H 1.08000 * 119.99979 * 168.17429 * 17 16 14 34 34 H 1.08004 * 120.08795 * 0.02562 * 19 18 17 35 35 H 1.07995 * 119.91495 * 180.20505 * 20 19 18 36 36 H 1.08002 * 119.82380 * 179.76167 * 21 20 19 37 37 H 1.07997 * 119.91478 * 179.97438 * 22 21 20 38 38 H 1.08995 * 109.47511 * 269.97520 * 24 23 22 39 39 H 1.08995 * 109.47359 * 29.98334 * 24 23 22 40 40 H 1.09004 * 109.46604 * 149.97749 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6082 1.9805 -0.8439 5 6 3.5423 1.4440 -0.1190 6 1 4.1542 1.3420 0.7651 7 6 4.1356 1.5758 -1.3566 8 7 5.4430 1.4893 -1.4716 9 14 3.0828 1.8772 -2.8699 10 1 3.0001 3.3363 -3.1328 11 1 3.6927 1.1970 -4.0406 12 1 1.7186 1.3377 -2.6392 13 7 1.6484 2.0988 1.2498 14 6 0.4308 2.6659 1.3604 15 8 -0.3433 2.6330 0.4219 16 6 0.0396 3.3224 2.6094 17 6 -1.1260 3.9960 2.6805 18 6 -1.8789 4.2960 1.4516 19 6 -1.2163 4.7950 0.3256 20 6 -1.9278 5.0698 -0.8230 21 6 -3.2958 4.8619 -0.8603 22 6 -3.9593 4.3728 0.2512 23 6 -3.2609 4.0893 1.4062 24 6 -3.9854 3.5573 2.6158 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 5.8604 1.5817 -2.3423 31 1 2.2655 2.1254 1.9978 32 1 0.6848 3.2670 3.4737 33 1 -1.5074 4.3155 3.6391 34 1 -0.1496 4.9614 0.3545 35 1 -1.4171 5.4521 -1.6944 36 1 -3.8482 5.0826 -1.7617 37 1 -5.0268 4.2136 0.2145 38 1 -4.3148 4.3899 3.2373 39 1 -4.8514 2.9783 2.2951 40 1 -3.3139 2.9188 3.1898 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492626101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:23 Heat of formation + Delta-G solvation = -17.789546 kcal Electronic energy + Delta-G solvation = -21231.390342 eV Core-core repulsion = 18203.456639 eV Total energy + Delta-G solvation = -3027.933703 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05930 -39.76144 -37.01103 -34.75228 -34.36835 -33.42140 -33.04728 -30.62576 -29.35833 -27.61104 -25.37640 -24.40867 -22.89220 -22.06879 -21.31611 -20.51955 -19.03304 -17.97470 -17.39753 -16.81094 -16.40802 -16.14561 -15.87210 -15.37878 -14.95800 -14.81236 -14.72378 -14.21720 -14.01470 -13.79693 -13.73908 -13.64820 -13.42782 -13.07998 -12.95822 -12.74629 -12.50205 -12.34193 -11.93885 -11.88133 -11.82952 -11.66968 -11.17275 -10.85147 -10.79941 -10.49817 -9.68125 -9.31232 -8.95904 -8.40380 -6.45152 -0.09195 0.63346 1.04667 1.24846 1.30327 1.42489 2.24925 2.57511 2.65303 3.00569 3.06067 3.87891 4.01523 4.08870 4.14965 4.23659 4.32672 4.41964 4.49696 4.52874 4.59279 4.71176 4.81948 4.86891 4.89613 5.01921 5.09554 5.14850 5.23942 5.27537 5.29608 5.35577 5.42160 5.44838 5.56615 5.68225 5.73708 5.82242 5.85291 6.16825 6.23645 6.60481 7.05234 7.21488 7.63450 8.74946 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.005677 C = 0.005207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.447760 B = 4930.993840 C = 5376.060579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C 0.243 3.757 4 H 0.031 0.969 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.923 3.077 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.255 1.255 13 N -0.702 5.702 14 C 0.517 3.483 15 O -0.565 6.565 16 C -0.212 4.212 17 C -0.024 4.024 18 C -0.078 4.078 19 C -0.056 4.056 20 C -0.160 4.160 21 C -0.116 4.116 22 C -0.143 4.143 23 C -0.079 4.079 24 C -0.110 4.110 25 H 0.052 0.948 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.269 0.731 31 H 0.402 0.598 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 5.743 9.080 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.138 3.862 4 H 0.049 0.951 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.166 4.166 8 N -0.570 5.570 9 Si 0.748 3.252 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.179 1.179 13 N -0.351 5.351 14 C 0.307 3.693 15 O -0.447 6.447 16 C -0.232 4.232 17 C -0.043 4.043 18 C -0.078 4.078 19 C -0.074 4.074 20 C -0.178 4.178 21 C -0.134 4.134 22 C -0.160 4.160 23 C -0.079 4.079 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.153 0.847 37 H 0.160 0.840 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.698 5.693 8.277 21.226 hybrid contribution 0.902 0.044 -0.954 1.314 sum -17.796 5.738 7.322 20.081 Atomic orbital electron populations 1.21708 0.95753 0.99890 1.01090 1.21970 0.94987 0.98251 1.00866 1.18884 0.92783 0.90092 0.84397 0.95082 1.21255 0.90477 1.50190 0.94355 0.92730 1.25571 0.95603 0.94040 1.01409 1.69988 1.10622 1.50759 1.25653 0.86086 0.80260 0.78803 0.80017 1.20222 1.20266 1.17883 1.46344 1.15599 1.56066 1.17093 1.19098 0.81697 0.79382 0.89149 1.90848 1.51707 1.60790 1.41354 1.23247 0.99351 1.02779 0.97844 1.22626 0.91741 0.92489 0.97484 1.18974 0.93419 1.01042 0.94354 1.21047 0.97752 0.95578 0.93058 1.21091 0.95436 1.03350 0.97934 1.21373 0.94003 0.98859 0.99203 1.21160 1.00626 1.01385 0.92866 1.20334 0.92323 0.98126 0.97098 1.20831 0.99955 1.01442 0.94410 0.92877 0.95111 0.93058 0.92210 0.93548 0.92125 0.76375 0.82100 0.81121 0.89067 0.86847 0.84675 0.83980 0.89138 0.90702 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.51 71.98 0.61 -4.40 16 2 C -0.12 -5.26 5.59 30.59 0.17 -5.09 16 3 C 0.24 11.44 1.86 44.24 0.08 11.53 16 4 H 0.03 1.62 4.55 -2.38 -0.01 1.61 16 5 C -0.52 -28.57 9.05 25.60 0.23 -28.34 16 6 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 7 C 0.03 1.93 5.47 84.65 0.46 2.39 16 8 N -0.93 -56.10 13.96 21.45 0.30 -55.80 16 9 Si 0.92 45.39 27.28 68.60 1.87 47.26 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.25 -12.41 6.41 99.48 0.64 -11.77 16 13 N -0.70 -27.55 5.01 -450.35 -2.26 -29.81 16 14 C 0.52 18.80 5.43 86.38 0.47 19.27 16 15 O -0.56 -23.77 9.45 -4.36 -0.04 -23.81 16 16 C -0.21 -5.50 9.90 23.62 0.23 -5.26 16 17 C -0.02 -0.55 8.32 23.84 0.20 -0.36 16 18 C -0.08 -2.23 4.44 -20.15 -0.09 -2.32 16 19 C -0.06 -1.88 6.69 22.57 0.15 -1.73 16 20 C -0.16 -5.07 10.03 22.23 0.22 -4.84 16 21 C -0.12 -3.11 10.04 22.35 0.22 -2.89 16 22 C -0.14 -3.46 9.69 22.23 0.22 -3.25 16 23 C -0.08 -1.95 5.92 -19.56 -0.12 -2.07 16 24 C -0.11 -1.84 9.57 71.24 0.68 -1.16 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.03 1.31 7.83 -2.39 -0.02 1.29 16 27 H 0.05 2.01 5.65 -2.39 -0.01 1.99 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.40 13.96 8.57 -92.71 -0.79 13.17 16 32 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.17 2.43 7.97 -2.91 -0.02 2.41 16 34 H 0.09 3.35 7.23 -2.91 -0.02 3.33 16 35 H 0.11 3.43 8.06 -2.91 -0.02 3.40 16 36 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 40 H 0.07 1.12 7.08 -2.39 -0.02 1.11 16 Total: -1.00 -68.67 324.97 3.79 -64.88 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.17 Total: 25.80 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 3.75 Total: -28.53 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.96 Total: -85.61 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.04 Total: -23.81 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.87 Total: 47.26 kcal Total: -68.67 3.79 -64.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492626101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.088 kcal (2) G-P(sol) polarization free energy of solvation -68.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds