Wall clock time and date at job start Mon Mar 30 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46557 * 2 1 4 4 H 1.09002 * 109.47963 * 305.00140 * 3 2 1 5 5 C 1.50697 * 109.47119 * 185.00164 * 3 2 1 6 6 H 1.08002 * 120.00218 * 240.00815 * 5 3 2 7 7 C 1.37876 * 120.00216 * 59.72258 * 5 3 2 8 8 N 1.31515 * 119.99647 * 0.28392 * 7 5 3 9 9 Si 1.86801 * 120.00476 * 180.27667 * 7 5 3 10 10 H 1.48503 * 109.47019 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47060 * 120.00149 * 9 7 5 12 12 H 1.48497 * 109.47037 * 240.00165 * 9 7 5 13 13 N 1.46497 * 109.47301 * 65.00476 * 3 2 1 14 14 C 1.34778 * 120.00012 * 274.99725 * 13 3 2 15 15 O 1.21694 * 120.00102 * 359.97438 * 14 13 3 16 16 C 1.46436 * 120.00225 * 179.97438 * 14 13 3 17 17 C 1.34802 * 119.99758 * 173.21556 * 16 14 13 18 18 C 1.47204 * 120.00455 * 349.04387 * 17 16 14 19 19 C 1.39839 * 120.16560 * 316.10768 * 18 17 16 20 20 C 1.37895 * 119.82438 * 179.76672 * 19 18 17 21 21 C 1.38404 * 120.16991 * 0.53949 * 20 19 18 22 22 C 1.50704 * 119.82651 * 179.71845 * 21 20 19 23 23 C 1.38404 * 120.34659 * 359.69231 * 21 20 19 24 24 C 1.37890 * 120.16922 * 0.04583 * 23 21 20 25 25 H 1.08997 * 109.47271 * 299.99444 * 1 2 3 26 26 H 1.09001 * 109.47278 * 59.99865 * 1 2 3 27 27 H 1.09005 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46952 * 240.00743 * 2 1 3 29 29 H 1.08993 * 109.47242 * 120.00467 * 2 1 3 30 30 H 0.97001 * 120.00412 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00452 * 94.99609 * 13 3 2 32 32 H 1.07996 * 119.99474 * 353.21781 * 16 14 13 33 33 H 1.08004 * 119.99406 * 169.03729 * 17 16 14 34 34 H 1.07996 * 120.08570 * 0.02562 * 19 18 17 35 35 H 1.07992 * 119.91561 * 180.25338 * 20 19 18 36 36 H 1.08998 * 109.46942 * 269.97274 * 22 21 20 37 37 H 1.08995 * 109.47168 * 29.97818 * 22 21 20 38 38 H 1.09000 * 109.46967 * 149.97372 * 22 21 20 39 39 H 1.07996 * 119.91428 * 180.02562 * 23 21 20 40 40 H 1.08003 * 120.08873 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1434 0.8736 -1.2253 8 7 3.4063 0.3322 -2.1704 9 14 6.0054 0.8691 -1.3752 10 1 6.5992 1.5348 -0.1879 11 1 6.4924 -0.5317 -1.4518 12 1 6.4048 1.6000 -2.6046 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3671 15 8 -0.3421 2.6325 0.4311 16 6 0.0474 3.3185 2.6185 17 6 -1.1117 4.0029 2.6904 18 6 -1.8687 4.2995 1.4632 19 6 -1.2036 4.7520 0.3194 20 6 -1.9191 5.0231 -0.8278 21 6 -3.2933 4.8591 -0.8456 22 6 -4.0684 5.1637 -2.1016 23 6 -3.9593 4.4162 0.2839 24 6 -3.2573 4.1358 1.4371 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0691 -2.9455 31 1 2.2719 2.1231 1.9978 32 1 0.6903 3.2526 3.4838 33 1 -1.4850 4.3335 3.6484 34 1 -0.1320 4.8848 0.3332 35 1 -1.4065 5.3687 -1.7132 36 1 -4.3757 6.2095 -2.0942 37 1 -3.4389 4.9761 -2.9715 38 1 -4.9511 4.5259 -2.1476 39 1 -5.0317 4.2903 0.2622 40 1 -3.7784 3.7906 2.3179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492626895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:31 Heat of formation + Delta-G solvation = 0.476350 kcal Electronic energy + Delta-G solvation = -20941.232493 eV Core-core repulsion = 17914.090859 eV Total energy + Delta-G solvation = -3027.141634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59520 -38.36221 -35.29834 -33.77437 -32.37048 -31.31888 -30.62291 -30.43191 -27.25920 -26.26556 -23.48025 -22.57304 -22.08829 -20.84421 -19.46460 -18.98537 -17.25752 -16.08188 -15.60360 -15.13378 -15.00268 -14.69025 -14.24376 -13.93222 -13.69887 -13.40799 -13.12983 -12.96023 -12.61915 -12.25232 -12.07741 -11.93015 -11.67296 -11.45283 -11.23404 -10.96321 -10.87935 -10.79411 -10.69983 -10.28270 -10.13832 -9.60860 -9.49242 -9.03836 -9.00560 -8.49873 -8.44050 -7.73630 -7.55626 -6.11580 -4.20863 1.07953 1.86672 2.22097 3.23416 3.31490 3.34008 4.06395 4.17420 4.22092 4.45089 4.97510 5.08556 5.17841 5.19805 5.32400 5.38019 5.58636 5.66569 5.68949 5.76330 5.96003 6.02209 6.28595 6.31407 6.43099 6.45486 6.50797 6.53200 6.71215 6.80035 6.93665 6.99974 7.08758 7.25052 7.37969 7.41372 7.51202 7.64730 7.78025 7.93193 8.20663 8.73049 8.81215 9.21905 9.47324 10.93648 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.004716 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.249979 B = 5935.299914 C = 6338.118718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.520 3.480 15 O -0.533 6.533 16 C -0.199 4.199 17 C -0.047 4.047 18 C -0.067 4.067 19 C -0.023 4.023 20 C -0.131 4.131 21 C -0.081 4.081 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.102 4.102 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.020 0.980 28 H 0.098 0.902 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.387 0.613 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.475 7.985 7.127 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.307 3.693 15 O -0.413 6.413 16 C -0.220 4.220 17 C -0.067 4.067 18 C -0.067 4.067 19 C -0.041 4.041 20 C -0.150 4.150 21 C -0.081 4.081 22 C -0.169 4.169 23 C -0.158 4.158 24 C -0.120 4.120 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.116 0.884 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.219 0.781 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.965 7.830 6.237 14.847 hybrid contribution 1.456 -0.311 0.360 1.532 sum -9.509 7.519 6.597 13.801 Atomic orbital electron populations 1.21820 0.98239 0.97850 1.01318 1.21925 0.92669 0.99849 1.02126 1.18755 0.94061 0.89168 0.81125 0.93300 1.21289 0.90836 1.38714 1.06349 0.92113 1.24883 0.98524 0.94828 0.95423 1.69908 1.34984 1.37640 1.09432 0.86425 0.85005 0.77766 0.78095 1.19759 1.20896 1.20896 1.46512 1.14429 1.55594 1.18366 1.18338 0.82890 0.80222 0.87847 1.90855 1.50662 1.59726 1.40086 1.23287 0.98284 1.01377 0.99046 1.22233 0.93177 0.94696 0.96587 1.18787 0.92975 1.01065 0.93908 1.21058 0.98668 0.92898 0.91462 1.20806 0.93359 1.02628 0.98165 1.19890 0.94037 0.98886 0.95308 1.20773 0.99629 1.01272 0.95230 1.20705 0.99057 1.02869 0.93172 1.21055 0.93057 0.99913 0.97956 0.94157 0.93207 0.96123 0.88402 0.95204 0.92660 0.78096 0.85690 0.85496 0.86782 0.86618 0.91657 0.91652 0.91931 0.86843 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.77 2.24 -69.09 -0.16 6.61 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.76 11.28 55.43 0.63 -24.13 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.70 -14.41 5.02 -56.33 -0.28 -14.70 16 14 C 0.52 10.10 5.36 -12.96 -0.07 10.03 16 15 O -0.53 -11.81 9.29 5.19 0.05 -11.76 16 16 C -0.20 -2.94 9.91 -37.50 -0.37 -3.31 16 17 C -0.05 -0.64 9.81 -37.16 -0.36 -1.00 16 18 C -0.07 -1.06 4.53 -105.06 -0.48 -1.53 16 19 C -0.02 -0.39 6.60 -39.11 -0.26 -0.65 16 20 C -0.13 -2.13 9.68 -39.65 -0.38 -2.51 16 21 C -0.08 -1.18 5.89 -104.50 -0.62 -1.80 16 22 C -0.11 -1.28 10.00 36.01 0.36 -0.92 16 23 C -0.14 -1.95 9.68 -39.65 -0.38 -2.34 16 24 C -0.10 -1.46 9.80 -39.11 -0.38 -1.84 16 25 H 0.04 0.90 5.64 -51.93 -0.29 0.61 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 2.66 5.94 -51.93 -0.31 2.36 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 6.96 8.52 -40.82 -0.35 6.61 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.11 2.06 7.03 -52.49 -0.37 1.69 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -30.04 327.40 -8.90 -38.95 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.88 Total: 9.09 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -3.32 Total: -17.95 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.34 Total: -38.83 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.05 Total: -11.76 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.04 -8.90 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492626895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.423 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds