Wall clock time and date at job start Mon Mar 30 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46557 * 2 1 4 4 H 1.09002 * 109.47963 * 305.00140 * 3 2 1 5 5 C 1.50697 * 109.47119 * 185.00164 * 3 2 1 6 6 H 1.08002 * 120.00218 * 240.00815 * 5 3 2 7 7 C 1.37876 * 120.00216 * 59.72258 * 5 3 2 8 8 N 1.31515 * 119.99647 * 0.28392 * 7 5 3 9 9 Si 1.86801 * 120.00476 * 180.27667 * 7 5 3 10 10 H 1.48503 * 109.47019 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47060 * 120.00149 * 9 7 5 12 12 H 1.48497 * 109.47037 * 240.00165 * 9 7 5 13 13 N 1.46497 * 109.47301 * 65.00476 * 3 2 1 14 14 C 1.34778 * 120.00012 * 274.99725 * 13 3 2 15 15 O 1.21694 * 120.00102 * 359.97438 * 14 13 3 16 16 C 1.46436 * 120.00225 * 179.97438 * 14 13 3 17 17 C 1.34802 * 119.99758 * 173.21556 * 16 14 13 18 18 C 1.47204 * 120.00455 * 349.04387 * 17 16 14 19 19 C 1.39839 * 120.16560 * 316.10768 * 18 17 16 20 20 C 1.37895 * 119.82438 * 179.76672 * 19 18 17 21 21 C 1.38404 * 120.16991 * 0.53949 * 20 19 18 22 22 C 1.50704 * 119.82651 * 179.71845 * 21 20 19 23 23 C 1.38404 * 120.34659 * 359.69231 * 21 20 19 24 24 C 1.37890 * 120.16922 * 0.04583 * 23 21 20 25 25 H 1.08997 * 109.47271 * 299.99444 * 1 2 3 26 26 H 1.09001 * 109.47278 * 59.99865 * 1 2 3 27 27 H 1.09005 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46952 * 240.00743 * 2 1 3 29 29 H 1.08993 * 109.47242 * 120.00467 * 2 1 3 30 30 H 0.97001 * 120.00412 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00452 * 94.99609 * 13 3 2 32 32 H 1.07996 * 119.99474 * 353.21781 * 16 14 13 33 33 H 1.08004 * 119.99406 * 169.03729 * 17 16 14 34 34 H 1.07996 * 120.08570 * 0.02562 * 19 18 17 35 35 H 1.07992 * 119.91561 * 180.25338 * 20 19 18 36 36 H 1.08998 * 109.46942 * 269.97274 * 22 21 20 37 37 H 1.08995 * 109.47168 * 29.97818 * 22 21 20 38 38 H 1.09000 * 109.46967 * 149.97372 * 22 21 20 39 39 H 1.07996 * 119.91428 * 180.02562 * 23 21 20 40 40 H 1.08003 * 120.08873 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4445 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1434 0.8736 -1.2253 8 7 3.4063 0.3322 -2.1704 9 14 6.0054 0.8691 -1.3752 10 1 6.5992 1.5348 -0.1879 11 1 6.4924 -0.5317 -1.4518 12 1 6.4048 1.6000 -2.6046 13 7 1.6524 2.0974 1.2518 14 6 0.4350 2.6643 1.3671 15 8 -0.3421 2.6325 0.4311 16 6 0.0474 3.3185 2.6185 17 6 -1.1117 4.0029 2.6904 18 6 -1.8687 4.2995 1.4632 19 6 -1.2036 4.7520 0.3194 20 6 -1.9191 5.0231 -0.8278 21 6 -3.2933 4.8591 -0.8456 22 6 -4.0684 5.1637 -2.1016 23 6 -3.9593 4.4162 0.2839 24 6 -3.2573 4.1358 1.4371 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0691 -2.9455 31 1 2.2719 2.1231 1.9978 32 1 0.6903 3.2526 3.4838 33 1 -1.4850 4.3335 3.6484 34 1 -0.1320 4.8848 0.3332 35 1 -1.4065 5.3687 -1.7132 36 1 -4.3757 6.2095 -2.0942 37 1 -3.4389 4.9761 -2.9715 38 1 -4.9511 4.5259 -2.1476 39 1 -5.0317 4.2903 0.2622 40 1 -3.7784 3.7906 2.3179 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492626895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:30 Heat of formation + Delta-G solvation = -16.423070 kcal Electronic energy + Delta-G solvation = -20941.965307 eV Core-core repulsion = 17914.090859 eV Total energy + Delta-G solvation = -3027.874448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98753 -39.69767 -37.03973 -35.04720 -34.24604 -32.94225 -31.93092 -31.67518 -29.08097 -27.51165 -25.24409 -24.01594 -23.35423 -22.18785 -21.28726 -20.43583 -18.78339 -17.77641 -17.24404 -16.59983 -16.35075 -16.07118 -15.86457 -15.38919 -14.94145 -14.62232 -14.49104 -14.35464 -14.21197 -13.70143 -13.49419 -13.28659 -13.17101 -13.03777 -12.88599 -12.73748 -12.65657 -12.14969 -12.03820 -11.96280 -11.83500 -11.58919 -11.02998 -10.66608 -10.59835 -10.42635 -9.76611 -9.34746 -8.80944 -8.16467 -6.33716 -0.08525 0.68015 1.06450 1.42398 1.43621 1.55367 2.37203 2.62325 2.84595 3.02078 3.13230 3.90576 4.00918 4.11856 4.17327 4.22625 4.48787 4.50861 4.57392 4.60612 4.65530 4.77060 4.83232 4.89289 4.99121 5.06745 5.17144 5.21282 5.27487 5.33564 5.43125 5.45733 5.57238 5.64655 5.67752 5.78899 5.80993 5.84458 5.99966 6.18716 6.24932 6.76056 7.12323 7.34647 7.72152 8.88935 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.004716 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.249979 B = 5935.299914 C = 6338.118718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.004 1.004 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.704 5.704 14 C 0.513 3.487 15 O -0.566 6.566 16 C -0.214 4.214 17 C -0.025 4.025 18 C -0.089 4.089 19 C -0.045 4.045 20 C -0.157 4.157 21 C -0.090 4.090 22 C -0.110 4.110 23 C -0.144 4.144 24 C -0.103 4.103 25 H 0.045 0.955 26 H 0.022 0.978 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.401 0.599 32 H 0.163 0.837 33 H 0.176 0.824 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.144 0.856 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 8.308 9.470 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.014 0.986 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.210 1.210 13 N -0.353 5.353 14 C 0.303 3.697 15 O -0.448 6.448 16 C -0.234 4.234 17 C -0.044 4.044 18 C -0.089 4.089 19 C -0.064 4.064 20 C -0.176 4.176 21 C -0.090 4.090 22 C -0.167 4.167 23 C -0.162 4.162 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.235 0.765 32 H 0.180 0.820 33 H 0.193 0.807 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.162 0.838 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.875 8.170 8.618 16.794 hybrid contribution 1.617 -0.340 -0.423 1.705 sum -10.259 7.830 8.196 15.288 Atomic orbital electron populations 1.21623 0.96940 0.98728 1.00185 1.21770 0.93711 0.99394 1.00998 1.18264 0.93349 0.88972 0.81598 0.98598 1.21640 0.91653 1.38545 1.06701 0.91218 1.25762 1.03235 0.94405 0.95048 1.70063 1.36953 1.38455 1.09991 0.85348 0.79269 0.77833 0.78191 1.18451 1.20436 1.21033 1.46277 1.15585 1.56115 1.17292 1.19150 0.81856 0.79519 0.89184 1.90850 1.51476 1.60653 1.41819 1.23249 0.99759 1.02742 0.97660 1.22698 0.91759 0.92437 0.97514 1.19123 0.94115 1.01325 0.94310 1.21011 0.97675 0.94739 0.92929 1.20972 0.94708 1.03904 0.97990 1.20274 0.93464 0.98209 0.97031 1.20816 0.99608 1.02817 0.93437 1.21139 1.00650 1.01736 0.92698 1.21470 0.92519 0.98836 0.99241 0.93629 0.95871 0.94069 0.91268 0.94317 0.92685 0.76502 0.81985 0.80723 0.89268 0.87219 0.89724 0.92253 0.90356 0.83848 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.85 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.63 2.24 44.24 0.10 14.73 16 4 H 0.00 -0.24 7.58 -2.39 -0.02 -0.26 16 5 C -0.55 -29.31 8.73 25.60 0.22 -29.09 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.84 5.29 84.65 0.45 1.28 16 8 N -0.92 -53.18 11.28 21.45 0.24 -52.94 16 9 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.70 -29.28 5.02 -450.34 -2.26 -31.54 16 14 C 0.51 20.07 5.36 86.38 0.46 20.53 16 15 O -0.57 -25.98 9.29 -4.33 -0.04 -26.02 16 16 C -0.21 -5.87 9.91 23.62 0.23 -5.64 16 17 C -0.02 -0.60 9.81 23.84 0.23 -0.37 16 18 C -0.09 -2.69 4.53 -20.15 -0.09 -2.78 16 19 C -0.05 -1.61 6.60 22.58 0.15 -1.46 16 20 C -0.16 -5.36 9.68 22.23 0.22 -5.14 16 21 C -0.09 -2.57 5.89 -19.78 -0.12 -2.69 16 22 C -0.11 -2.39 10.00 71.24 0.71 -1.67 16 23 C -0.14 -3.72 9.68 22.23 0.22 -3.51 16 24 C -0.10 -2.69 9.80 22.58 0.22 -2.47 16 25 H 0.04 2.05 5.64 -2.39 -0.01 2.03 16 26 H 0.02 1.16 7.84 -2.39 -0.02 1.14 16 27 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.07 3.91 5.94 -2.38 -0.01 3.90 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.40 14.20 8.52 -92.71 -0.79 13.41 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 34 H 0.09 3.49 7.03 -2.91 -0.02 3.47 16 35 H 0.11 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 38 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 39 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -68.56 327.40 3.99 -64.56 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.24 Total: 30.36 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.79 Total: -29.00 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -2.02 Total: -84.47 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.04 Total: -26.02 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -68.56 3.99 -64.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492626895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.141 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds