Wall clock time and date at job start Mon Mar 30 2020 01:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47407 * 2 1 4 4 C 1.52998 * 109.47180 * 239.99797 * 2 1 3 5 5 C 1.50702 * 109.47261 * 120.00120 * 2 1 3 6 6 C 1.33043 * 119.99744 * 359.97438 * 5 2 1 7 7 C 1.47033 * 119.99957 * 180.02562 * 6 5 2 8 8 O 1.21626 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00299 * 180.02562 * 7 6 5 10 10 C 1.38987 * 120.00291 * 175.79843 * 9 7 6 11 11 C 1.38689 * 120.28888 * 34.57591 * 10 9 7 12 12 C 1.38191 * 120.03214 * 180.02562 * 11 10 9 13 13 C 1.38885 * 120.61992 * 0.02562 * 12 11 10 14 14 C 1.36451 * 120.58733 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.94380 * 359.67377 * 14 13 12 16 16 C 1.41046 * 120.30693 * 180.31551 * 15 14 13 17 17 H 1.07993 * 120.00572 * 214.99505 * 16 15 14 18 18 C 1.39967 * 119.99637 * 34.99481 * 16 15 14 19 19 N 1.30848 * 120.00174 * 355.63233 * 18 16 15 20 20 Si 1.86802 * 120.00088 * 175.63802 * 18 16 15 21 21 H 1.48494 * 109.47248 * 59.99565 * 20 18 16 22 22 H 1.48500 * 109.47275 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46986 * 299.99740 * 20 18 16 24 24 H 1.08999 * 109.46711 * 300.00047 * 1 2 3 25 25 H 1.08997 * 109.46944 * 59.99747 * 1 2 3 26 26 H 1.08998 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47568 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47276 * 300.00050 * 3 2 1 29 29 H 1.08999 * 109.47223 * 60.00267 * 3 2 1 30 30 H 1.08998 * 109.47214 * 300.00603 * 4 2 1 31 31 H 1.09005 * 109.47134 * 59.99843 * 4 2 1 32 32 H 1.09001 * 109.47709 * 180.02562 * 4 2 1 33 33 H 1.07995 * 120.00398 * 179.97438 * 5 2 1 34 34 H 1.08003 * 119.99990 * 359.72464 * 6 5 2 35 35 H 0.97001 * 119.99071 * 355.79484 * 9 7 6 36 36 H 1.08008 * 119.98126 * 0.02706 * 11 10 9 37 37 H 1.07998 * 119.69123 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.70773 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.02923 * 179.97438 * 14 13 12 40 40 H 0.97002 * 120.00295 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1678 -1.2156 2.1064 7 6 1.6579 -1.9083 3.3072 8 8 2.8537 -2.0198 3.4995 9 7 0.7821 -2.4205 4.1945 10 6 1.2429 -3.1506 5.2836 11 6 2.4412 -2.8135 5.8953 12 6 2.8946 -3.5433 6.9775 13 6 2.1610 -4.6178 7.4636 14 6 0.9794 -4.9723 6.8805 15 6 0.4916 -4.2417 5.7808 16 6 -0.7322 -4.5973 5.1764 17 1 -0.8592 -4.4889 4.1094 18 6 -1.7820 -5.0907 5.9595 19 7 -1.6010 -5.3028 7.2379 20 14 -3.4417 -5.4466 5.1796 21 1 -3.2790 -6.4674 4.1135 22 1 -4.3762 -5.9563 6.2151 23 1 -3.9897 -4.1984 4.5904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 3.0941 -0.8095 1.4012 34 1 0.1060 -1.1127 1.9380 35 1 -0.1699 -2.2795 4.0727 36 1 3.0201 -1.9800 5.5255 37 1 3.8282 -3.2757 7.4499 38 1 2.5295 -5.1783 8.3100 39 1 0.4164 -5.8097 7.2655 40 1 -2.3285 -5.6452 7.7806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493018453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:40 Heat of formation + Delta-G solvation = -16.569146 kcal Electronic energy + Delta-G solvation = -20388.265183 eV Core-core repulsion = 17360.384401 eV Total energy + Delta-G solvation = -3027.880782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.56707 -37.97093 -36.95496 -33.69323 -33.59910 -31.44037 -29.56954 -28.35223 -27.47409 -27.39121 -25.30397 -23.64156 -21.34981 -20.56781 -19.32378 -18.18194 -17.38634 -16.84521 -16.17575 -15.17005 -14.85262 -14.52557 -14.46051 -14.19919 -14.01556 -13.57560 -12.98008 -12.62354 -12.50679 -12.34721 -12.20020 -12.02833 -11.82987 -11.73522 -11.22854 -11.18037 -11.16285 -11.02340 -10.94010 -10.78167 -10.46817 -10.08312 -9.76718 -9.28390 -9.23883 -9.15493 -8.79607 -7.28418 -6.92182 -6.60252 -4.42905 1.63556 2.75663 3.00150 3.04543 3.05947 3.20941 3.88478 3.91491 4.04933 4.63639 4.67313 4.69794 4.84111 5.20616 5.33235 5.42713 5.45839 5.56129 5.61951 5.65865 5.71690 5.72537 5.89487 5.99501 6.09733 6.14764 6.34341 6.51182 6.57322 6.59247 6.63092 7.00373 7.10202 7.24027 7.32231 7.69662 7.75703 8.03305 8.11552 8.16165 8.47194 8.60123 8.85739 8.88793 9.09570 10.24344 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.004983 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.325500 B = 5618.094258 C = 7043.556679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.070 4.070 6 C -0.206 4.206 7 C 0.527 3.473 8 O -0.548 6.548 9 N -0.632 5.632 10 C 0.023 3.977 11 C -0.094 4.094 12 C -0.216 4.216 13 C -0.120 4.120 14 C -0.140 4.140 15 C 0.096 3.904 16 C -0.470 4.470 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.808 5.808 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.403 0.597 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 8.468 -11.559 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.046 4.046 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.090 4.090 6 C -0.226 4.226 7 C 0.316 3.684 8 O -0.429 6.429 9 N -0.272 5.272 10 C -0.071 4.071 11 C -0.114 4.114 12 C -0.236 4.236 13 C -0.139 4.139 14 C -0.160 4.160 15 C 0.092 3.908 16 C -0.501 4.501 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.435 5.435 20 Si 0.738 3.262 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.239 0.761 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.707 8.299 -11.231 13.983 hybrid contribution -1.334 -0.173 -0.214 1.362 sum -0.627 8.126 -11.446 14.051 Atomic orbital electron populations 1.22011 0.94156 1.02375 1.02010 1.19738 0.95916 0.95428 0.93552 1.21821 1.01309 0.94398 1.01952 1.21827 1.01314 1.00453 0.95945 1.23589 1.00273 0.92389 0.92774 1.22852 1.00805 1.02905 0.96065 1.18620 0.86406 0.80019 0.83371 1.90719 1.15851 1.59341 1.76958 1.42793 1.09889 1.50961 1.23603 1.17859 0.99411 0.96150 0.93710 1.20674 0.95880 0.99688 0.95115 1.20374 1.01051 1.01234 1.00951 1.20544 0.96285 0.97748 0.99333 1.21175 0.94745 1.01267 0.98785 1.17470 0.92250 0.87979 0.93073 1.19260 0.96530 1.39158 0.95184 0.90791 1.25847 1.00878 0.92831 0.94638 1.69755 1.33524 1.34169 1.06063 0.86290 0.80845 0.79568 0.79486 1.19093 1.20384 1.19123 0.92035 0.92424 0.91948 0.92310 0.92300 0.92332 0.92271 0.92297 0.92304 0.85759 0.85423 0.76113 0.87233 0.89177 0.89318 0.85187 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 7.13 37.16 0.26 -1.10 16 2 C -0.05 -0.46 0.99 -155.66 -0.15 -0.61 16 3 C -0.14 -1.20 8.46 37.16 0.31 -0.89 16 4 C -0.14 -1.24 8.46 37.16 0.31 -0.93 16 5 C -0.07 -0.93 8.33 -36.11 -0.30 -1.23 16 6 C -0.21 -3.07 9.00 -37.82 -0.34 -3.41 16 7 C 0.53 10.52 7.60 -12.69 -0.10 10.42 16 8 O -0.55 -12.71 13.63 5.25 0.07 -12.64 16 9 N -0.63 -13.37 4.95 -10.56 -0.05 -13.42 16 10 C 0.02 0.56 6.33 -83.21 -0.53 0.04 16 11 C -0.09 -2.31 8.68 -39.43 -0.34 -2.66 16 12 C -0.22 -5.15 10.04 -39.36 -0.40 -5.55 16 13 C -0.12 -2.90 9.97 -39.99 -0.40 -3.30 16 14 C -0.14 -3.65 8.61 -39.28 -0.34 -3.99 16 15 C 0.10 2.52 5.56 -106.65 -0.59 1.93 16 16 C -0.47 -11.94 8.22 -37.87 -0.31 -12.25 16 17 H 0.07 1.79 7.63 -52.49 -0.40 1.39 16 18 C 0.07 1.80 5.42 -17.32 -0.09 1.70 16 19 N -0.81 -20.45 10.62 55.55 0.59 -19.86 16 20 Si 0.91 18.19 29.56 -169.99 -5.03 13.17 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H 0.06 0.57 7.49 -51.93 -0.39 0.18 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.59 7.50 -51.93 -0.39 0.20 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.12 1.80 7.49 -52.49 -0.39 1.41 16 34 H 0.13 1.60 5.75 -52.48 -0.30 1.30 16 35 H 0.40 7.64 8.08 -40.82 -0.33 7.31 16 36 H 0.11 2.69 6.20 -52.48 -0.33 2.36 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.13 3.49 6.16 -52.49 -0.32 3.16 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -29.18 330.58 -8.22 -37.41 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -5.79 Total: 12.18 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.00 Total: -21.82 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 0.54 Total: -33.28 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.18 -8.22 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493018453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.839 kcal (2) G-P(sol) polarization free energy of solvation -29.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds