Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47407 * 2 1 4 4 C 1.52998 * 109.47180 * 239.99797 * 2 1 3 5 5 C 1.50702 * 109.47261 * 120.00120 * 2 1 3 6 6 C 1.33043 * 119.99744 * 359.97438 * 5 2 1 7 7 C 1.47033 * 119.99957 * 180.02562 * 6 5 2 8 8 O 1.21626 * 119.99933 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00299 * 180.02562 * 7 6 5 10 10 C 1.38987 * 120.00291 * 175.79843 * 9 7 6 11 11 C 1.38689 * 120.28888 * 34.57591 * 10 9 7 12 12 C 1.38191 * 120.03214 * 180.02562 * 11 10 9 13 13 C 1.38885 * 120.61992 * 0.02562 * 12 11 10 14 14 C 1.36451 * 120.58733 * 0.02562 * 13 12 11 15 15 C 1.40745 * 119.94380 * 359.67377 * 14 13 12 16 16 C 1.41046 * 120.30693 * 180.31551 * 15 14 13 17 17 H 1.07993 * 120.00572 * 214.99505 * 16 15 14 18 18 C 1.39967 * 119.99637 * 34.99481 * 16 15 14 19 19 N 1.30848 * 120.00174 * 355.63233 * 18 16 15 20 20 Si 1.86802 * 120.00088 * 175.63802 * 18 16 15 21 21 H 1.48494 * 109.47248 * 59.99565 * 20 18 16 22 22 H 1.48500 * 109.47275 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46986 * 299.99740 * 20 18 16 24 24 H 1.08999 * 109.46711 * 300.00047 * 1 2 3 25 25 H 1.08997 * 109.46944 * 59.99747 * 1 2 3 26 26 H 1.08998 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47568 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47276 * 300.00050 * 3 2 1 29 29 H 1.08999 * 109.47223 * 60.00267 * 3 2 1 30 30 H 1.08998 * 109.47214 * 300.00603 * 4 2 1 31 31 H 1.09005 * 109.47134 * 59.99843 * 4 2 1 32 32 H 1.09001 * 109.47709 * 180.02562 * 4 2 1 33 33 H 1.07995 * 120.00398 * 179.97438 * 5 2 1 34 34 H 1.08003 * 119.99990 * 359.72464 * 6 5 2 35 35 H 0.97001 * 119.99071 * 355.79484 * 9 7 6 36 36 H 1.08008 * 119.98126 * 0.02706 * 11 10 9 37 37 H 1.07998 * 119.69123 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.70773 * 179.97438 * 13 12 11 39 39 H 1.08000 * 120.02923 * 179.97438 * 14 13 12 40 40 H 0.97002 * 120.00295 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.1678 -1.2156 2.1064 7 6 1.6579 -1.9083 3.3072 8 8 2.8537 -2.0198 3.4995 9 7 0.7821 -2.4205 4.1945 10 6 1.2429 -3.1506 5.2836 11 6 2.4412 -2.8135 5.8953 12 6 2.8946 -3.5433 6.9775 13 6 2.1610 -4.6178 7.4636 14 6 0.9794 -4.9723 6.8805 15 6 0.4916 -4.2417 5.7808 16 6 -0.7322 -4.5973 5.1764 17 1 -0.8592 -4.4889 4.1094 18 6 -1.7820 -5.0907 5.9595 19 7 -1.6010 -5.3028 7.2379 20 14 -3.4417 -5.4466 5.1796 21 1 -3.2790 -6.4674 4.1135 22 1 -4.3762 -5.9563 6.2151 23 1 -3.9897 -4.1984 4.5904 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 3.0941 -0.8095 1.4012 34 1 0.1060 -1.1127 1.9380 35 1 -0.1699 -2.2795 4.0727 36 1 3.0201 -1.9800 5.5255 37 1 3.8282 -3.2757 7.4499 38 1 2.5295 -5.1783 8.3100 39 1 0.4164 -5.8097 7.2655 40 1 -2.3285 -5.6452 7.7806 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493018453.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -31.531267 kcal Electronic energy + Delta-G solvation = -20388.913989 eV Core-core repulsion = 17360.384401 eV Total energy + Delta-G solvation = -3028.529588 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20780 -39.27078 -38.40854 -35.48831 -35.43740 -32.62698 -31.48806 -30.14481 -28.19371 -28.07970 -27.17390 -25.04962 -23.13447 -22.23297 -20.90721 -19.34962 -19.10958 -18.38049 -17.80320 -16.93002 -16.07339 -15.96730 -15.91297 -15.59643 -15.03660 -14.80040 -14.67140 -14.37832 -14.14671 -13.61020 -13.16295 -13.15689 -13.02323 -12.85375 -12.82496 -12.73682 -12.52775 -12.13743 -11.98353 -11.92143 -11.87243 -11.62131 -11.58760 -11.07120 -10.94249 -10.55855 -10.38408 -9.24562 -8.79278 -8.44795 -6.36668 0.33645 0.96655 1.12374 1.42450 1.52958 1.54995 2.24142 2.36864 2.53191 2.81284 3.64383 3.69559 3.87032 4.09990 4.16062 4.27966 4.44757 4.51248 4.62311 4.75307 4.78035 4.81065 4.92673 5.01866 5.04540 5.09507 5.15336 5.21538 5.24748 5.29608 5.34669 5.44825 5.44897 5.49833 5.58065 5.79562 5.87667 6.14670 6.18169 6.27107 6.65717 6.77231 6.96112 7.02216 7.41926 8.42419 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016749 B = 0.004983 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.325500 B = 5618.094258 C = 7043.556679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.045 4.045 6 C -0.222 4.222 7 C 0.524 3.476 8 O -0.587 6.587 9 N -0.632 5.632 10 C 0.015 3.985 11 C -0.109 4.109 12 C -0.219 4.219 13 C -0.124 4.124 14 C -0.164 4.164 15 C 0.068 3.932 16 C -0.492 4.492 17 H 0.079 0.921 18 C 0.033 3.967 19 N -0.838 5.838 20 Si 0.987 3.013 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.254 1.254 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.155 0.845 35 H 0.413 0.587 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 9.502 -13.484 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.195 4.195 5 C -0.065 4.065 6 C -0.242 4.242 7 C 0.316 3.684 8 O -0.470 6.470 9 N -0.274 5.274 10 C -0.080 4.080 11 C -0.129 4.129 12 C -0.239 4.239 13 C -0.142 4.142 14 C -0.184 4.184 15 C 0.064 3.936 16 C -0.522 4.522 17 H 0.097 0.903 18 C -0.180 4.180 19 N -0.465 5.465 20 Si 0.808 3.192 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.178 1.178 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.173 0.827 35 H 0.250 0.750 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.502 9.350 -13.166 16.156 hybrid contribution -0.839 -0.450 0.356 1.016 sum -1.341 8.900 -12.810 15.656 Atomic orbital electron populations 1.22032 0.93138 1.02484 1.03032 1.19836 0.96770 0.95850 0.92025 1.21829 1.01348 0.93374 1.02828 1.21841 1.01355 1.00170 0.96137 1.23892 0.99325 0.90093 0.93197 1.22724 1.02390 1.04500 0.94614 1.19425 0.85744 0.79158 0.84106 1.90686 1.17482 1.60887 1.77974 1.42810 1.10623 1.50810 1.23137 1.18041 0.99296 0.96129 0.94518 1.20842 0.96201 1.00116 0.95759 1.20688 1.01883 1.00752 1.00579 1.20787 0.95650 0.97963 0.99843 1.21210 0.95745 1.01581 0.99856 1.17816 0.93207 0.88785 0.93799 1.19480 0.96897 1.40227 0.95592 0.90306 1.26741 1.04411 0.91946 0.94924 1.69840 1.34919 1.34335 1.07399 0.85172 0.75833 0.79716 0.78502 1.18809 1.19825 1.17837 0.92054 0.90453 0.92313 0.92364 0.90166 0.92758 0.93010 0.90116 0.92360 0.87387 0.82746 0.75049 0.87456 0.86601 0.86825 0.86515 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 7.13 71.98 0.51 -1.78 16 2 C -0.04 -0.78 0.99 -52.93 -0.05 -0.83 16 3 C -0.14 -2.02 8.46 71.98 0.61 -1.41 16 4 C -0.14 -2.12 8.46 71.98 0.61 -1.52 16 5 C -0.05 -1.14 8.33 24.52 0.20 -0.93 16 6 C -0.22 -6.44 9.00 23.42 0.21 -6.23 16 7 C 0.52 21.16 7.60 86.55 0.66 21.81 16 8 O -0.59 -27.87 13.63 -4.11 -0.06 -27.93 16 9 N -0.63 -27.18 4.95 -305.58 -1.51 -28.69 16 10 C 0.01 0.76 6.33 38.92 0.25 1.01 16 11 C -0.11 -5.50 8.68 22.37 0.19 -5.31 16 12 C -0.22 -10.48 10.04 22.41 0.22 -10.25 16 13 C -0.12 -6.02 9.97 22.01 0.22 -5.81 16 14 C -0.16 -8.80 8.61 22.47 0.19 -8.60 16 15 C 0.07 3.65 5.56 -21.18 -0.12 3.53 16 16 C -0.49 -25.28 8.22 23.38 0.19 -25.09 16 17 H 0.08 3.84 7.63 -2.91 -0.02 3.82 16 18 C 0.03 1.59 5.42 85.26 0.46 2.06 16 19 N -0.84 -42.90 10.62 21.83 0.23 -42.67 16 20 Si 0.99 36.70 29.56 68.60 2.03 38.72 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 24 H 0.06 0.95 7.49 -2.39 -0.02 0.94 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.96 7.50 -2.39 -0.02 0.94 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 3.11 7.49 -2.91 -0.02 3.09 16 34 H 0.16 3.61 5.75 -2.91 -0.02 3.59 16 35 H 0.41 15.75 8.08 -92.71 -0.75 15.00 16 36 H 0.11 5.40 6.20 -2.91 -0.02 5.38 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.79 16 38 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.12 6.49 6.16 -2.91 -0.02 6.47 16 40 H 0.28 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -64.09 330.58 5.34 -58.75 By element: Atomic # 1 Polarization: 40.89 SS G_CDS: 0.29 Total: 41.18 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.37 Total: -39.36 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -1.28 Total: -71.36 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.06 Total: -27.93 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.72 kcal Total: -64.09 5.34 -58.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493018453.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.217 kcal (2) G-P(sol) polarization free energy of solvation -64.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds