Wall clock time and date at job start Mon Mar 30 2020 01:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46824 * 2 1 4 4 C 1.52997 * 109.46973 * 240.00371 * 2 1 3 5 5 C 1.50701 * 109.47190 * 120.00244 * 2 1 3 6 6 C 1.33015 * 119.99894 * 359.97438 * 5 2 1 7 7 C 1.47066 * 119.99826 * 179.97438 * 6 5 2 8 8 O 1.21622 * 119.99921 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00078 * 180.02562 * 7 6 5 10 10 C 1.39836 * 120.00221 * 185.09975 * 9 7 6 11 11 C 1.39320 * 119.95347 * 33.33283 * 10 9 7 12 12 C 1.38477 * 120.42821 * 180.26003 * 11 10 9 13 13 C 1.37684 * 120.32320 * 359.44689 * 12 11 10 14 14 C 1.40745 * 119.89417 * 0.27642 * 13 12 11 15 15 C 1.41406 * 120.21267 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99791 * 29.20739 * 15 14 13 17 17 C 1.39931 * 120.00164 * 209.20534 * 15 14 13 18 18 N 1.30830 * 120.00091 * 15.62380 * 17 15 14 19 19 Si 1.86800 * 119.99754 * 195.62892 * 17 15 14 20 20 H 1.48497 * 109.47553 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47281 * 120.00035 * 19 17 15 22 22 H 1.48499 * 109.47029 * 239.99426 * 19 17 15 23 23 C 1.38266 * 119.94879 * 213.04463 * 10 9 7 24 24 H 1.09002 * 109.47049 * 300.00159 * 1 2 3 25 25 H 1.09000 * 109.47232 * 59.99453 * 1 2 3 26 26 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46923 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47216 * 300.00022 * 3 2 1 29 29 H 1.08996 * 109.47169 * 60.00728 * 3 2 1 30 30 H 1.09001 * 109.47342 * 299.99979 * 4 2 1 31 31 H 1.08998 * 109.47435 * 59.99752 * 4 2 1 32 32 H 1.09005 * 109.47024 * 179.97438 * 4 2 1 33 33 H 1.07995 * 119.99491 * 180.02562 * 5 2 1 34 34 H 1.08001 * 119.99840 * 0.02562 * 6 5 2 35 35 H 0.97007 * 119.99647 * 5.09690 * 9 7 6 36 36 H 1.07999 * 119.77997 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.83680 * 179.72598 * 12 11 10 38 38 H 1.08003 * 120.05357 * 180.25323 * 13 12 11 39 39 H 0.96996 * 119.99699 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.16536 * 0.03566 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.1680 -1.2156 2.1062 7 6 1.6583 -1.9094 3.3067 8 8 2.8540 -2.0209 3.4989 9 7 0.7825 -2.4216 4.1938 10 6 1.2450 -2.9866 5.3865 11 6 2.3798 -2.4690 6.0072 12 6 2.8496 -3.0243 7.1856 13 6 2.1929 -4.0877 7.7631 14 6 1.0418 -4.6176 7.1507 15 6 0.3624 -5.7101 7.7377 16 1 0.3871 -5.8491 8.8085 17 6 -0.3420 -6.6110 6.9313 18 7 -0.1320 -6.6356 5.6402 19 14 -1.5822 -7.7785 7.6984 20 1 -1.6333 -7.5526 9.1652 21 1 -2.9238 -7.5307 7.1119 22 1 -1.1751 -9.1807 7.4278 23 6 0.5719 -4.0542 5.9511 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 3.0942 -0.8087 1.4014 34 1 0.1062 -1.1169 1.9353 35 1 -0.1687 -2.3984 4.0050 36 1 2.8987 -1.6317 5.5643 37 1 3.7327 -2.6183 7.6563 38 1 2.5607 -4.5148 8.6844 39 1 -0.6206 -7.2599 5.0813 40 1 -0.3103 -4.4537 5.4730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493187871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:50 Heat of formation + Delta-G solvation = -17.783023 kcal Electronic energy + Delta-G solvation = -20078.454508 eV Core-core repulsion = 17050.521088 eV Total energy + Delta-G solvation = -3027.933420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.67344 -38.01525 -36.99399 -34.20170 -33.22268 -31.53617 -29.52017 -28.36566 -27.55483 -27.45167 -25.21325 -23.83533 -21.27134 -20.77427 -19.52365 -18.27066 -17.35393 -17.11776 -15.81059 -15.05179 -14.87011 -14.76598 -14.46680 -14.40526 -14.13404 -13.66140 -13.01192 -12.74892 -12.56738 -12.34154 -12.31381 -12.13167 -11.89782 -11.73100 -11.27636 -11.22339 -11.13108 -11.05606 -10.88150 -10.70822 -10.45304 -9.99074 -9.87308 -9.40112 -9.35187 -9.15890 -8.87206 -7.32748 -6.91286 -6.68087 -4.34955 1.51705 2.78495 2.92543 3.09282 3.14852 3.23507 3.74589 3.83205 3.96834 4.53168 4.59693 4.68822 4.76619 5.09517 5.21762 5.32548 5.39960 5.44581 5.55306 5.65193 5.65434 5.69085 5.81619 5.92411 6.01351 6.08183 6.26836 6.43799 6.49112 6.66336 6.72930 6.94528 7.08380 7.10392 7.27053 7.64710 7.73926 7.94905 8.04487 8.20346 8.36406 8.60236 8.82497 8.91833 8.98963 10.25790 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.003767 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.313998 B = 7431.279280 C = 8240.824522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.065 4.065 6 C -0.210 4.210 7 C 0.536 3.464 8 O -0.532 6.532 9 N -0.660 5.660 10 C 0.145 3.855 11 C -0.224 4.224 12 C -0.088 4.088 13 C -0.225 4.225 14 C 0.123 3.877 15 C -0.468 4.468 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.800 5.800 19 Si 0.906 3.094 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.276 1.276 23 C -0.179 4.179 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.401 0.599 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.278 0.722 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 10.783 -11.538 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.084 4.084 6 C -0.231 4.231 7 C 0.325 3.675 8 O -0.410 6.410 9 N -0.302 5.302 10 C 0.053 3.947 11 C -0.245 4.245 12 C -0.107 4.107 13 C -0.245 4.245 14 C 0.120 3.880 15 C -0.499 4.499 16 H 0.096 0.904 17 C -0.140 4.140 18 N -0.427 5.427 19 Si 0.731 3.269 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.201 1.201 23 C -0.200 4.200 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.235 0.765 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.427 10.597 -11.631 15.799 hybrid contribution -1.065 -0.737 0.130 1.302 sum -2.491 9.859 -11.501 15.352 Atomic orbital electron populations 1.22013 0.94137 1.02322 1.02071 1.19758 0.95944 0.95517 0.93506 1.21826 1.01388 0.94286 1.02014 1.21829 1.01403 1.00444 0.95896 1.23643 1.00384 0.91884 0.92519 1.22820 1.00840 1.03407 0.96050 1.18609 0.86383 0.79205 0.83315 1.90779 1.15693 1.58061 1.76456 1.43360 1.09736 1.58501 1.18578 1.17618 0.97000 0.94680 0.85451 1.20340 1.00819 1.04859 0.98471 1.20434 0.98195 0.96676 0.95348 1.21077 0.98646 1.01900 1.02881 1.17359 0.89377 0.90795 0.90502 1.19524 1.27670 1.07778 0.94904 0.90351 1.25862 0.96003 0.97593 0.94579 1.69842 1.34778 1.32549 1.05486 0.86299 0.80351 0.79657 0.80593 1.18471 1.19860 1.20112 1.20980 1.02901 0.95470 1.00661 0.92044 0.92334 0.91990 0.92239 0.92213 0.92311 0.92243 0.92208 0.92228 0.85633 0.85342 0.76535 0.87981 0.89007 0.88803 0.91144 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.13 37.16 0.26 -0.96 16 2 C -0.05 -0.44 0.99 -155.66 -0.15 -0.59 16 3 C -0.14 -1.12 8.46 37.16 0.31 -0.81 16 4 C -0.14 -1.16 8.46 37.16 0.31 -0.85 16 5 C -0.06 -0.80 8.33 -36.12 -0.30 -1.10 16 6 C -0.21 -2.92 9.00 -37.82 -0.34 -3.26 16 7 C 0.54 10.24 7.50 -12.68 -0.10 10.15 16 8 O -0.53 -12.21 13.88 5.26 0.07 -12.14 16 9 N -0.66 -12.99 5.33 -10.99 -0.06 -13.05 16 10 C 0.14 3.49 6.27 -83.79 -0.53 2.96 16 11 C -0.22 -5.49 8.66 -39.09 -0.34 -5.83 16 12 C -0.09 -2.10 10.01 -39.70 -0.40 -2.50 16 13 C -0.23 -5.71 9.79 -38.84 -0.38 -6.09 16 14 C 0.12 3.32 5.52 -106.85 -0.59 2.73 16 15 C -0.47 -12.52 9.04 -37.74 -0.34 -12.86 16 16 H 0.08 2.02 7.89 -52.48 -0.41 1.60 16 17 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 18 N -0.80 -20.96 11.15 55.55 0.62 -20.34 16 19 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 C -0.18 -4.64 8.57 -38.67 -0.33 -4.97 16 24 H 0.06 0.50 7.50 -51.93 -0.39 0.11 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.52 7.50 -51.93 -0.39 0.13 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.13 1.74 7.49 -52.49 -0.39 1.35 16 34 H 0.13 1.43 5.75 -52.49 -0.30 1.12 16 35 H 0.40 6.48 8.80 -40.82 -0.36 6.12 16 36 H 0.10 2.48 6.39 -52.49 -0.34 2.14 16 37 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.09 2.22 8.06 -52.48 -0.42 1.80 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.12 3.07 6.44 -52.49 -0.34 2.73 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -30.85 333.30 -8.22 -39.07 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.86 Total: 9.86 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.99 Total: -22.14 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.56 Total: -33.39 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.85 -8.22 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493187871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.287 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds