Wall clock time and date at job start Mon Mar 30 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46824 * 2 1 4 4 C 1.52997 * 109.46973 * 240.00371 * 2 1 3 5 5 C 1.50701 * 109.47190 * 120.00244 * 2 1 3 6 6 C 1.33015 * 119.99894 * 359.97438 * 5 2 1 7 7 C 1.47066 * 119.99826 * 179.97438 * 6 5 2 8 8 O 1.21622 * 119.99921 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00078 * 180.02562 * 7 6 5 10 10 C 1.39836 * 120.00221 * 185.09975 * 9 7 6 11 11 C 1.39320 * 119.95347 * 33.33283 * 10 9 7 12 12 C 1.38477 * 120.42821 * 180.26003 * 11 10 9 13 13 C 1.37684 * 120.32320 * 359.44689 * 12 11 10 14 14 C 1.40745 * 119.89417 * 0.27642 * 13 12 11 15 15 C 1.41406 * 120.21267 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99791 * 29.20739 * 15 14 13 17 17 C 1.39931 * 120.00164 * 209.20534 * 15 14 13 18 18 N 1.30830 * 120.00091 * 15.62380 * 17 15 14 19 19 Si 1.86800 * 119.99754 * 195.62892 * 17 15 14 20 20 H 1.48497 * 109.47553 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47281 * 120.00035 * 19 17 15 22 22 H 1.48499 * 109.47029 * 239.99426 * 19 17 15 23 23 C 1.38266 * 119.94879 * 213.04463 * 10 9 7 24 24 H 1.09002 * 109.47049 * 300.00159 * 1 2 3 25 25 H 1.09000 * 109.47232 * 59.99453 * 1 2 3 26 26 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46923 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47216 * 300.00022 * 3 2 1 29 29 H 1.08996 * 109.47169 * 60.00728 * 3 2 1 30 30 H 1.09001 * 109.47342 * 299.99979 * 4 2 1 31 31 H 1.08998 * 109.47435 * 59.99752 * 4 2 1 32 32 H 1.09005 * 109.47024 * 179.97438 * 4 2 1 33 33 H 1.07995 * 119.99491 * 180.02562 * 5 2 1 34 34 H 1.08001 * 119.99840 * 0.02562 * 6 5 2 35 35 H 0.97007 * 119.99647 * 5.09690 * 9 7 6 36 36 H 1.07999 * 119.77997 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.83680 * 179.72598 * 12 11 10 38 38 H 1.08003 * 120.05357 * 180.25323 * 13 12 11 39 39 H 0.96996 * 119.99699 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.16536 * 0.03566 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.1680 -1.2156 2.1062 7 6 1.6583 -1.9094 3.3067 8 8 2.8540 -2.0209 3.4989 9 7 0.7825 -2.4216 4.1938 10 6 1.2450 -2.9866 5.3865 11 6 2.3798 -2.4690 6.0072 12 6 2.8496 -3.0243 7.1856 13 6 2.1929 -4.0877 7.7631 14 6 1.0418 -4.6176 7.1507 15 6 0.3624 -5.7101 7.7377 16 1 0.3871 -5.8491 8.8085 17 6 -0.3420 -6.6110 6.9313 18 7 -0.1320 -6.6356 5.6402 19 14 -1.5822 -7.7785 7.6984 20 1 -1.6333 -7.5526 9.1652 21 1 -2.9238 -7.5307 7.1119 22 1 -1.1751 -9.1807 7.4278 23 6 0.5719 -4.0542 5.9511 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 -1.7488 -1.2494 31 1 1.6766 -0.2073 -2.1392 32 1 3.1300 -0.7208 -1.2495 33 1 3.0942 -0.8087 1.4014 34 1 0.1062 -1.1169 1.9353 35 1 -0.1687 -2.3984 4.0050 36 1 2.8987 -1.6317 5.5643 37 1 3.7327 -2.6183 7.6563 38 1 2.5607 -4.5148 8.6844 39 1 -0.6206 -7.2599 5.0813 40 1 -0.3103 -4.4537 5.4730 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493187871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:49 Heat of formation + Delta-G solvation = -34.637166 kcal Electronic energy + Delta-G solvation = -20079.185358 eV Core-core repulsion = 17050.521088 eV Total energy + Delta-G solvation = -3028.664270 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26192 -39.27023 -38.46512 -35.99693 -35.08588 -32.67767 -31.47680 -30.14664 -28.20585 -28.09360 -27.18657 -25.16089 -23.15205 -22.34390 -21.11900 -19.40142 -19.05466 -18.52401 -17.51367 -16.73620 -16.56773 -16.02823 -15.91674 -15.63494 -15.06401 -14.84103 -14.77351 -14.45956 -14.18429 -13.64402 -13.18570 -13.17766 -13.02359 -12.90964 -12.79275 -12.63060 -12.53915 -12.21137 -11.94085 -11.92820 -11.85781 -11.72544 -11.60890 -11.22070 -10.94758 -10.65908 -10.42609 -9.32131 -8.79697 -8.58530 -6.37656 0.27288 0.96571 1.04843 1.40526 1.50891 1.55809 2.23010 2.28233 2.32388 2.77823 3.57386 3.69624 3.84670 4.08319 4.08718 4.24355 4.42471 4.45150 4.69914 4.76642 4.79853 4.83121 4.91624 5.00265 5.03624 5.08896 5.11968 5.13941 5.18759 5.23380 5.27610 5.33605 5.43380 5.46571 5.55265 5.78352 5.85181 6.00605 6.06267 6.32974 6.57644 6.73459 6.93458 6.96668 7.28228 8.37027 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.003767 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.313998 B = 7431.279280 C = 8240.824522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.043 4.043 6 C -0.222 4.222 7 C 0.532 3.468 8 O -0.577 6.577 9 N -0.656 5.656 10 C 0.148 3.852 11 C -0.238 4.238 12 C -0.086 4.086 13 C -0.245 4.245 14 C 0.095 3.905 15 C -0.501 4.501 16 H 0.078 0.922 17 C 0.036 3.964 18 N -0.831 5.831 19 Si 0.985 3.015 20 H -0.258 1.258 21 H -0.262 1.262 22 H -0.269 1.269 23 C -0.198 4.198 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.107 0.893 34 H 0.161 0.839 35 H 0.417 0.583 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.287 0.713 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 11.359 -12.888 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.196 4.196 5 C -0.063 4.063 6 C -0.242 4.242 7 C 0.324 3.676 8 O -0.459 6.459 9 N -0.299 5.299 10 C 0.054 3.946 11 C -0.259 4.259 12 C -0.104 4.104 13 C -0.265 4.265 14 C 0.092 3.908 15 C -0.530 4.530 16 H 0.096 0.904 17 C -0.178 4.178 18 N -0.458 5.458 19 Si 0.805 3.195 20 H -0.182 1.182 21 H -0.187 1.187 22 H -0.194 1.194 23 C -0.219 4.219 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.178 0.822 35 H 0.254 0.746 36 H 0.121 0.879 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.713 11.197 -13.001 17.371 hybrid contribution -0.562 -0.844 0.454 1.111 sum -3.275 10.353 -12.547 16.593 Atomic orbital electron populations 1.22035 0.92925 1.02576 1.03135 1.19849 0.96941 0.95822 0.91914 1.21837 1.01326 0.93384 1.02891 1.21846 1.01337 1.00214 0.96174 1.23935 0.99410 0.89895 0.93074 1.22710 1.02585 1.04587 0.94353 1.19476 0.85675 0.78312 0.84154 1.90747 1.17618 1.59827 1.77670 1.43351 1.10924 1.58169 1.17490 1.17714 0.96420 0.93916 0.86517 1.20519 1.01248 1.05232 0.98926 1.20750 0.98723 0.95939 0.95009 1.21266 0.98813 1.02764 1.03616 1.17773 0.90197 0.91496 0.91350 1.19792 1.29335 1.08689 0.95229 0.90356 1.26744 0.97220 0.98972 0.94868 1.69897 1.35516 1.33468 1.06879 0.85128 0.77642 0.77111 0.79594 1.18152 1.18665 1.19421 1.20925 1.03341 0.96537 1.01129 0.91874 0.90481 0.92153 0.92462 0.90145 0.92658 0.92935 0.90087 0.92461 0.87476 0.82192 0.74617 0.87944 0.86137 0.87837 0.90268 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 7.13 71.98 0.51 -1.49 16 2 C -0.05 -0.73 0.99 -52.93 -0.05 -0.78 16 3 C -0.14 -1.88 8.46 71.98 0.61 -1.27 16 4 C -0.14 -2.00 8.46 71.98 0.61 -1.39 16 5 C -0.04 -1.03 8.33 24.52 0.20 -0.82 16 6 C -0.22 -5.92 9.00 23.42 0.21 -5.71 16 7 C 0.53 20.45 7.50 86.56 0.65 21.10 16 8 O -0.58 -27.10 13.88 -4.10 -0.06 -27.15 16 9 N -0.66 -26.06 5.33 -306.93 -1.64 -27.70 16 10 C 0.15 7.28 6.27 38.13 0.24 7.52 16 11 C -0.24 -11.87 8.66 22.59 0.20 -11.68 16 12 C -0.09 -4.14 10.01 22.20 0.22 -3.92 16 13 C -0.24 -12.67 9.79 22.75 0.22 -12.44 16 14 C 0.09 5.26 5.52 -21.31 -0.12 5.15 16 15 C -0.50 -27.30 9.04 23.46 0.21 -27.09 16 16 H 0.08 4.11 7.89 -2.91 -0.02 4.09 16 17 C 0.04 1.83 5.15 85.25 0.44 2.27 16 18 N -0.83 -43.97 11.15 21.82 0.24 -43.73 16 19 Si 0.98 38.21 29.59 68.60 2.03 40.23 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 23 C -0.20 -10.55 8.57 22.86 0.20 -10.36 16 24 H 0.06 0.84 7.50 -2.39 -0.02 0.82 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.84 7.50 -2.39 -0.02 0.83 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.11 2.98 7.49 -2.91 -0.02 2.95 16 34 H 0.16 3.20 5.75 -2.91 -0.02 3.19 16 35 H 0.42 13.43 8.80 -92.70 -0.82 12.61 16 36 H 0.10 5.06 6.39 -2.91 -0.02 5.04 16 37 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 40 H 0.11 5.88 6.44 -2.91 -0.02 5.86 16 Total: -1.00 -68.01 333.30 5.15 -62.86 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.22 Total: 36.40 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 4.35 Total: -40.93 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -1.39 Total: -71.42 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.23 kcal Total: -68.01 5.15 -62.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493187871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.227 kcal (2) G-P(sol) polarization free energy of solvation -68.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds