Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 N 1.46497 * 109.47203 * 172.64313 * 3 2 1 5 5 C 1.36871 * 119.99977 * 98.45782 * 4 3 2 6 6 H 1.08004 * 119.99769 * 160.41749 * 5 4 3 7 7 C 1.39045 * 120.00121 * 340.41469 * 5 4 3 8 8 N 1.31368 * 119.99824 * 10.02271 * 7 5 4 9 9 Si 1.86791 * 120.00365 * 190.02355 * 7 5 4 10 10 H 1.48502 * 109.47228 * 90.00042 * 9 7 5 11 11 H 1.48497 * 109.47557 * 210.00138 * 9 7 5 12 12 H 1.48504 * 109.47158 * 330.00236 * 9 7 5 13 13 C 1.34783 * 120.00148 * 278.45683 * 4 3 2 14 14 O 1.21585 * 120.00118 * 206.32370 * 13 4 3 15 15 C 1.47730 * 119.99881 * 26.32724 * 13 4 3 16 16 C 1.39670 * 120.14718 * 342.15806 * 15 13 4 17 17 C 1.37915 * 119.83941 * 179.71944 * 16 15 13 18 18 C 1.38397 * 120.15812 * 0.57513 * 17 16 15 19 19 C 1.38353 * 120.30113 * 359.67986 * 18 17 16 20 20 C 1.50694 * 119.92646 * 180.02562 * 19 18 17 21 21 C 1.52997 * 117.49965 * 8.63868 * 20 19 18 22 22 C 1.53006 * 60.00197 * 252.51332 * 21 20 19 23 23 C 1.37962 * 120.15324 * 0.03654 * 19 18 17 24 24 H 1.08995 * 109.47534 * 59.99710 * 1 2 3 25 25 H 1.09001 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47128 * 299.99659 * 1 2 3 27 27 H 1.08998 * 109.47048 * 239.99882 * 2 1 3 28 28 H 1.09002 * 109.47157 * 119.99741 * 2 1 3 29 29 H 1.09003 * 109.47010 * 52.64728 * 3 2 1 30 30 H 1.08995 * 109.47336 * 292.64604 * 3 2 1 31 31 H 0.96999 * 120.00306 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.07898 * 359.97438 * 16 15 13 33 33 H 1.08008 * 119.92430 * 180.29302 * 17 16 15 34 34 H 1.07997 * 119.85529 * 179.69373 * 18 17 16 35 35 H 1.09003 * 115.55828 * 154.34750 * 20 19 18 36 36 H 1.09001 * 117.50027 * 0.02562 * 21 20 19 37 37 H 1.09005 * 117.50375 * 145.02275 * 21 20 19 38 38 H 1.08998 * 117.49445 * 252.50902 * 22 21 20 39 39 H 1.08998 * 117.51741 * 107.47717 * 22 21 20 40 40 H 1.07999 * 120.08172 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4943 1.4463 0.1769 5 6 4.3156 1.5723 -0.9108 6 1 5.3397 1.8896 -0.7802 7 6 3.8316 1.2916 -2.1837 8 7 2.5456 1.0984 -2.3695 9 14 5.0099 1.1894 -3.6295 10 1 5.4937 -0.2069 -3.7760 11 1 4.3074 1.6027 -4.8708 12 1 6.1654 2.0912 -3.3910 13 6 4.0234 1.3259 1.4106 14 8 5.1229 1.7874 1.6482 15 6 3.2676 0.6329 2.4741 16 6 1.8920 0.4321 2.3399 17 6 1.1936 -0.2207 3.3340 18 6 1.8506 -0.6658 4.4678 19 6 3.2122 -0.4655 4.6096 20 6 3.9191 -0.9542 5.8474 21 6 3.1251 -1.8368 6.8125 22 6 3.4566 -0.3924 7.1934 23 6 3.9242 0.1808 3.6203 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5732 1.9929 0.8169 30 1 1.7881 1.9170 -0.9484 31 1 2.2078 0.9030 -3.2576 32 1 1.3771 0.7836 1.4580 33 1 0.1306 -0.3809 3.2295 34 1 1.2980 -1.1721 5.2455 35 1 4.9817 -1.1667 5.7292 36 1 2.0914 -2.0643 6.5519 37 1 3.6651 -2.6302 7.3293 38 1 4.2147 -0.2357 7.9606 39 1 2.6412 0.3308 7.1833 40 1 4.9871 0.3362 3.7320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516083541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = 86.016881 kcal Electronic energy + Delta-G solvation = -21375.573517 eV Core-core repulsion = 18352.141199 eV Total energy + Delta-G solvation = -3023.432318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.13164 -38.33044 -36.35056 -35.75600 -33.10279 -31.38758 -30.42392 -29.75383 -26.07601 -24.89188 -23.48331 -22.72386 -22.14531 -20.72448 -20.63536 -18.95957 -17.18658 -16.67328 -16.35080 -15.32088 -14.95431 -14.59728 -14.17771 -13.94018 -13.57592 -13.47511 -13.21489 -12.81397 -12.58767 -12.13828 -11.91783 -11.74356 -11.59759 -11.32763 -11.19097 -10.96798 -10.84377 -10.64810 -10.51506 -10.37334 -10.33417 -10.25458 -9.82151 -9.63512 -8.96884 -8.59194 -8.36753 -7.83406 -7.70377 -6.22010 -3.88113 1.52920 1.83637 3.14795 3.22559 3.27287 3.60732 3.97136 4.09347 4.55554 4.61682 4.86488 4.94180 5.04695 5.07885 5.17948 5.37854 5.45504 5.60381 5.62447 5.71451 5.80687 5.87574 5.95958 6.04505 6.08015 6.09892 6.17897 6.29487 6.44904 6.49664 6.53235 6.70204 6.82778 6.93738 7.00746 7.07194 7.31849 7.43687 7.48429 7.64316 8.09894 8.54282 9.11148 9.37071 9.87493 10.61098 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.005313 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.530356 B = 5268.869434 C = 6022.657508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.152 4.152 3 C 0.097 3.903 4 N -0.446 5.446 5 C -0.290 4.290 6 H 0.102 0.898 7 C 0.027 3.973 8 N -0.877 5.877 9 Si 0.931 3.069 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.492 3.508 14 O -0.583 6.583 15 C -0.110 4.110 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.116 4.116 19 C -0.078 4.078 20 C -0.107 4.107 21 C -0.180 4.180 22 C -0.173 4.173 23 C -0.067 4.067 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.148 0.852 31 H 0.267 0.733 32 H 0.195 0.805 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 -4.779 9.970 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.190 4.190 3 C -0.026 4.026 4 N -0.163 5.163 5 C -0.417 4.417 6 H 0.119 0.881 7 C -0.174 4.174 8 N -0.518 5.518 9 Si 0.758 3.242 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.282 3.718 14 O -0.468 6.468 15 C -0.114 4.114 16 C -0.159 4.159 17 C -0.159 4.159 18 C -0.135 4.135 19 C -0.078 4.078 20 C -0.125 4.125 21 C -0.217 4.217 22 C -0.209 4.209 23 C -0.086 4.086 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.165 0.835 31 H 0.078 0.922 32 H 0.211 0.789 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.294 -4.551 9.850 12.074 hybrid contribution 0.377 -0.308 -0.641 0.805 sum -4.918 -4.859 9.209 11.515 Atomic orbital electron populations 1.21742 0.96820 1.00675 1.01140 1.22572 0.94409 0.99072 1.02920 1.22480 0.80100 0.96196 1.03793 1.43480 1.05689 1.62309 1.04854 1.19811 0.95483 1.42054 0.84401 0.88063 1.25327 0.96621 0.96578 0.98924 1.69700 1.11366 1.47856 1.22898 0.85835 0.79907 0.78773 0.79692 1.20363 1.20892 1.19478 1.18029 0.86166 0.84410 0.83192 1.90577 1.23622 1.50933 1.81683 1.20352 0.94116 1.01253 0.95672 1.23939 0.94948 0.96710 1.00341 1.21010 0.99509 1.01033 0.94373 1.21013 0.93902 1.00540 0.98024 1.18890 0.93453 1.00692 0.94782 1.20974 0.98995 1.03829 0.88749 1.23040 1.01381 0.93803 1.03462 1.23002 1.03625 0.96681 0.97638 1.20947 1.00115 0.95901 0.91632 0.92226 0.93596 0.93742 0.89600 0.91547 0.94751 0.83505 0.92166 0.78867 0.86450 0.86790 0.87176 0.88479 0.88780 0.88758 0.88692 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.60 37.16 0.36 -1.95 16 2 C -0.15 -3.02 4.78 -26.73 -0.13 -3.15 16 3 C 0.10 2.15 4.15 -4.04 -0.02 2.13 16 4 N -0.45 -11.49 2.64 -125.33 -0.33 -11.82 16 5 C -0.29 -7.90 9.46 -15.00 -0.14 -8.04 16 6 H 0.10 2.91 7.39 -52.48 -0.39 2.52 16 7 C 0.03 0.67 5.43 -17.45 -0.09 0.57 16 8 N -0.88 -21.36 8.13 55.50 0.45 -20.90 16 9 Si 0.93 20.18 29.56 -169.99 -5.03 15.15 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 C 0.49 12.70 7.25 -12.38 -0.09 12.61 16 14 O -0.58 -16.75 16.36 5.29 0.09 -16.66 16 15 C -0.11 -2.39 5.65 -104.97 -0.59 -2.98 16 16 C -0.14 -2.66 5.50 -39.17 -0.22 -2.88 16 17 C -0.14 -2.23 10.03 -39.64 -0.40 -2.63 16 18 C -0.12 -1.75 9.30 -39.48 -0.37 -2.11 16 19 C -0.08 -1.27 5.60 -104.68 -0.59 -1.85 16 20 C -0.11 -1.41 6.04 -91.77 -0.55 -1.97 16 21 C -0.18 -1.90 9.86 -26.73 -0.26 -2.16 16 22 C -0.17 -1.90 10.16 -26.72 -0.27 -2.17 16 23 C -0.07 -1.30 9.28 -39.17 -0.36 -1.66 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.62 7.23 -51.93 -0.38 0.25 16 27 H 0.09 1.94 6.79 -51.93 -0.35 1.59 16 28 H 0.07 1.34 4.31 -64.81 -0.28 1.06 16 29 H 0.03 0.71 6.14 -51.93 -0.32 0.39 16 30 H 0.15 3.52 5.28 -52.07 -0.27 3.24 16 31 H 0.27 6.20 8.31 -40.82 -0.34 5.86 16 32 H 0.20 3.58 0.68 -97.74 -0.07 3.52 16 33 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.11 1.40 6.00 -52.49 -0.32 1.09 16 35 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.10 0.98 6.17 -51.93 -0.32 0.66 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.13 2.49 7.75 -52.49 -0.41 2.08 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -28.86 313.09 -9.02 -37.88 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.19 Total: 9.87 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.73 Total: -18.24 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.12 Total: -32.73 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.09 Total: -16.66 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.86 -9.02 -37.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516083541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.901 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds