Wall clock time and date at job start Mon Mar 30 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 N 1.46497 * 109.47203 * 172.64313 * 3 2 1 5 5 C 1.36871 * 119.99977 * 98.45782 * 4 3 2 6 6 H 1.08004 * 119.99769 * 160.41749 * 5 4 3 7 7 C 1.39045 * 120.00121 * 340.41469 * 5 4 3 8 8 N 1.31368 * 119.99824 * 10.02271 * 7 5 4 9 9 Si 1.86791 * 120.00365 * 190.02355 * 7 5 4 10 10 H 1.48502 * 109.47228 * 90.00042 * 9 7 5 11 11 H 1.48497 * 109.47557 * 210.00138 * 9 7 5 12 12 H 1.48504 * 109.47158 * 330.00236 * 9 7 5 13 13 C 1.34783 * 120.00148 * 278.45683 * 4 3 2 14 14 O 1.21585 * 120.00118 * 206.32370 * 13 4 3 15 15 C 1.47730 * 119.99881 * 26.32724 * 13 4 3 16 16 C 1.39670 * 120.14718 * 342.15806 * 15 13 4 17 17 C 1.37915 * 119.83941 * 179.71944 * 16 15 13 18 18 C 1.38397 * 120.15812 * 0.57513 * 17 16 15 19 19 C 1.38353 * 120.30113 * 359.67986 * 18 17 16 20 20 C 1.50694 * 119.92646 * 180.02562 * 19 18 17 21 21 C 1.52997 * 117.49965 * 8.63868 * 20 19 18 22 22 C 1.53006 * 60.00197 * 252.51332 * 21 20 19 23 23 C 1.37962 * 120.15324 * 0.03654 * 19 18 17 24 24 H 1.08995 * 109.47534 * 59.99710 * 1 2 3 25 25 H 1.09001 * 109.47334 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47128 * 299.99659 * 1 2 3 27 27 H 1.08998 * 109.47048 * 239.99882 * 2 1 3 28 28 H 1.09002 * 109.47157 * 119.99741 * 2 1 3 29 29 H 1.09003 * 109.47010 * 52.64728 * 3 2 1 30 30 H 1.08995 * 109.47336 * 292.64604 * 3 2 1 31 31 H 0.96999 * 120.00306 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.07898 * 359.97438 * 16 15 13 33 33 H 1.08008 * 119.92430 * 180.29302 * 17 16 15 34 34 H 1.07997 * 119.85529 * 179.69373 * 18 17 16 35 35 H 1.09003 * 115.55828 * 154.34750 * 20 19 18 36 36 H 1.09001 * 117.50027 * 0.02562 * 21 20 19 37 37 H 1.09005 * 117.50375 * 145.02275 * 21 20 19 38 38 H 1.08998 * 117.49445 * 252.50902 * 22 21 20 39 39 H 1.08998 * 117.51741 * 107.47717 * 22 21 20 40 40 H 1.07999 * 120.08172 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4943 1.4463 0.1769 5 6 4.3156 1.5723 -0.9108 6 1 5.3397 1.8896 -0.7802 7 6 3.8316 1.2916 -2.1837 8 7 2.5456 1.0984 -2.3695 9 14 5.0099 1.1894 -3.6295 10 1 5.4937 -0.2069 -3.7760 11 1 4.3074 1.6027 -4.8708 12 1 6.1654 2.0912 -3.3910 13 6 4.0234 1.3259 1.4106 14 8 5.1229 1.7874 1.6482 15 6 3.2676 0.6329 2.4741 16 6 1.8920 0.4321 2.3399 17 6 1.1936 -0.2207 3.3340 18 6 1.8506 -0.6658 4.4678 19 6 3.2122 -0.4655 4.6096 20 6 3.9191 -0.9542 5.8474 21 6 3.1251 -1.8368 6.8125 22 6 3.4566 -0.3924 7.1934 23 6 3.9242 0.1808 3.6203 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5732 1.9929 0.8169 30 1 1.7881 1.9170 -0.9484 31 1 2.2078 0.9030 -3.2576 32 1 1.3771 0.7836 1.4580 33 1 0.1306 -0.3809 3.2295 34 1 1.2980 -1.1721 5.2455 35 1 4.9817 -1.1667 5.7292 36 1 2.0914 -2.0643 6.5519 37 1 3.6651 -2.6302 7.3293 38 1 4.2147 -0.2357 7.9606 39 1 2.6412 0.3308 7.1833 40 1 4.9871 0.3362 3.7320 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516083541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:45 Heat of formation + Delta-G solvation = 71.307618 kcal Electronic energy + Delta-G solvation = -21376.211358 eV Core-core repulsion = 18352.141199 eV Total energy + Delta-G solvation = -3024.070160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.73323 -39.73009 -37.96664 -37.27050 -34.80848 -33.28690 -31.85461 -31.13062 -27.81769 -26.61869 -24.77554 -24.11338 -23.10973 -22.29773 -22.00009 -20.55883 -19.11113 -18.09509 -17.92243 -16.70207 -16.49985 -16.19316 -15.82051 -15.66004 -15.09572 -14.83432 -14.70288 -14.23736 -14.13416 -13.67447 -13.45884 -13.03299 -12.98577 -12.90605 -12.61846 -12.43320 -12.27954 -12.12260 -12.03764 -12.03306 -11.73228 -11.38158 -11.29818 -11.06578 -10.81751 -10.54417 -9.85047 -9.63453 -9.17066 -8.15969 -5.93158 0.06880 0.48233 1.38905 1.40999 1.51815 1.99364 2.25279 2.78649 2.92714 3.10847 3.23536 3.68481 3.86699 4.00861 4.05489 4.09453 4.21109 4.22183 4.37150 4.45869 4.48464 4.68592 4.70783 4.80935 4.84972 4.95097 5.03903 5.12191 5.14567 5.20418 5.26252 5.29659 5.33268 5.47089 5.55401 5.58340 5.67047 5.73201 5.82402 6.09024 6.14664 6.58853 7.11328 7.41728 7.90945 8.63475 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026052 B = 0.005313 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.530356 B = 5268.869434 C = 6022.657508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.099 3.901 4 N -0.456 5.456 5 C -0.341 4.341 6 H 0.068 0.932 7 C 0.006 3.994 8 N -0.871 5.871 9 Si 0.991 3.009 10 H -0.275 1.275 11 H -0.264 1.264 12 H -0.279 1.279 13 C 0.473 3.527 14 O -0.636 6.636 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.129 4.129 18 C -0.103 4.103 19 C -0.069 4.069 20 C -0.141 4.141 21 C -0.157 4.157 22 C -0.164 4.164 23 C -0.089 4.089 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.130 0.870 31 H 0.275 0.725 32 H 0.194 0.806 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 -6.734 11.473 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C -0.023 4.023 4 N -0.172 5.172 5 C -0.469 4.469 6 H 0.086 0.914 7 C -0.196 4.196 8 N -0.510 5.510 9 Si 0.814 3.186 10 H -0.200 1.200 11 H -0.188 1.188 12 H -0.204 1.204 13 C 0.265 3.735 14 O -0.525 6.525 15 C -0.145 4.145 16 C -0.166 4.166 17 C -0.147 4.147 18 C -0.121 4.121 19 C -0.069 4.069 20 C -0.159 4.159 21 C -0.193 4.193 22 C -0.201 4.201 23 C -0.109 4.109 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.086 0.914 32 H 0.210 0.790 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.479 -6.517 11.344 15.591 hybrid contribution 1.315 0.286 -1.024 1.691 sum -7.164 -6.231 10.320 14.023 Atomic orbital electron populations 1.21681 0.93147 1.02442 1.02214 1.22398 0.97405 0.96678 1.01247 1.22553 0.78358 0.98098 1.03303 1.43695 1.07003 1.61999 1.04529 1.19683 0.95007 1.45975 0.86228 0.91393 1.25964 0.98305 0.95207 1.00145 1.69807 1.11706 1.45717 1.23795 0.84979 0.77907 0.78475 0.77194 1.20042 1.18806 1.20445 1.18837 0.86192 0.84170 0.84266 1.90502 1.26020 1.53226 1.82756 1.20126 0.95578 1.03318 0.95487 1.23872 0.93507 0.97666 1.01556 1.21447 1.01292 0.98841 0.93122 1.21495 0.93230 0.98887 0.98511 1.19187 0.94288 0.98813 0.94638 1.20992 0.99144 1.07157 0.88648 1.23185 1.01558 0.93802 1.00778 1.23101 1.03751 0.97385 0.95880 1.20939 0.99527 0.97816 0.92626 0.92510 0.91433 0.91329 0.92809 0.91646 0.93250 0.85298 0.91392 0.78984 0.82277 0.82640 0.87765 0.87190 0.86941 0.87339 0.88595 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.60 71.98 0.69 -3.25 16 2 C -0.14 -5.50 4.78 30.60 0.15 -5.35 16 3 C 0.10 4.48 4.15 86.38 0.36 4.84 16 4 N -0.46 -24.98 2.64 -668.70 -1.77 -26.75 16 5 C -0.34 -19.91 9.46 84.10 0.80 -19.11 16 6 H 0.07 4.29 7.39 -2.91 -0.02 4.27 16 7 C 0.01 0.29 5.43 84.96 0.46 0.75 16 8 N -0.87 -42.90 8.13 21.68 0.18 -42.72 16 9 Si 0.99 42.28 29.56 68.60 2.03 44.31 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 C 0.47 26.35 7.25 86.75 0.63 26.98 16 14 O -0.64 -40.07 16.36 -3.98 -0.07 -40.14 16 15 C -0.14 -6.40 5.65 -20.09 -0.11 -6.51 16 16 C -0.15 -5.42 5.50 22.54 0.12 -5.30 16 17 C -0.13 -3.57 10.03 22.23 0.22 -3.35 16 18 C -0.10 -2.68 9.30 22.34 0.21 -2.47 16 19 C -0.07 -2.15 5.60 -19.90 -0.11 -2.26 16 20 C -0.14 -3.44 6.04 -11.54 -0.07 -3.51 16 21 C -0.16 -2.62 9.86 30.60 0.30 -2.32 16 22 C -0.16 -3.08 10.16 30.60 0.31 -2.77 16 23 C -0.09 -3.65 9.28 22.54 0.21 -3.45 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.65 7.23 -2.38 -0.02 1.63 16 27 H 0.05 2.45 6.79 -2.39 -0.02 2.43 16 28 H 0.07 2.62 4.31 -14.49 -0.06 2.56 16 29 H 0.05 2.07 6.14 -2.39 -0.01 2.05 16 30 H 0.13 6.33 5.28 -2.66 -0.01 6.31 16 31 H 0.27 12.59 8.31 -92.71 -0.77 11.82 16 32 H 0.19 6.90 0.68 -45.42 -0.03 6.87 16 33 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.16 2.80 6.00 -2.91 -0.02 2.78 16 35 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.11 1.57 6.17 -2.39 -0.01 1.55 16 37 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.10 4.49 7.75 -2.91 -0.02 4.47 16 Total: -1.00 -69.29 313.09 5.51 -63.78 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.98 Total: 28.58 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 4.16 Total: -27.06 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.59 Total: -69.47 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.07 Total: -40.14 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -69.29 5.51 -63.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516083541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.084 kcal (2) G-P(sol) polarization free energy of solvation -69.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds