Wall clock time and date at job start Mon Mar 30 2020 01:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47474 * 2 1 4 4 N 1.46499 * 109.47083 * 120.00387 * 2 1 3 5 5 C 1.34783 * 119.99632 * 299.99528 * 4 2 1 6 6 O 1.21550 * 119.99922 * 359.97438 * 5 4 2 7 7 C 1.47883 * 119.99833 * 179.72764 * 5 4 2 8 8 C 1.39916 * 120.02667 * 359.97438 * 7 5 4 9 9 C 1.38330 * 120.36295 * 179.76471 * 8 7 5 10 10 C 1.37758 * 120.40656 * 0.51900 * 9 8 7 11 11 C 1.40745 * 120.04005 * 359.73902 * 10 9 8 12 12 C 1.41433 * 120.17794 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00237 * 334.93089 * 12 11 10 14 14 C 1.39938 * 120.00394 * 154.93239 * 12 11 10 15 15 N 1.30831 * 119.99567 * 342.57987 * 14 12 11 16 16 Si 1.86800 * 120.00402 * 162.57858 * 14 12 11 17 17 H 1.48497 * 109.47163 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46790 * 120.00106 * 16 14 12 19 19 H 1.48494 * 109.47218 * 240.00019 * 16 14 12 20 20 C 1.38999 * 120.02574 * 180.27918 * 7 5 4 21 21 C 1.52996 * 109.46949 * 240.00040 * 2 1 3 22 22 C 1.53003 * 117.50295 * 123.74906 * 21 2 1 23 23 C 1.53001 * 117.50002 * 55.08809 * 21 2 1 24 24 H 1.09007 * 109.46597 * 300.00241 * 1 2 3 25 25 H 1.09006 * 109.47088 * 59.99578 * 1 2 3 26 26 H 1.08997 * 109.47650 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47335 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47307 * 300.00288 * 3 2 1 29 29 H 1.09004 * 109.46983 * 59.99958 * 3 2 1 30 30 H 0.96991 * 120.00523 * 119.99915 * 4 2 1 31 31 H 1.08001 * 119.82302 * 0.02562 * 8 7 5 32 32 H 1.07993 * 119.79724 * 180.25786 * 9 8 7 33 33 H 1.08001 * 119.97887 * 179.76629 * 10 9 8 34 34 H 0.96997 * 119.99797 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.20022 * 359.94970 * 20 7 5 36 36 H 1.09008 * 115.55050 * 269.41652 * 21 2 1 37 37 H 1.08999 * 117.49414 * 359.97438 * 22 21 2 38 38 H 1.08996 * 117.50251 * 145.02073 * 22 21 2 39 39 H 1.09005 * 117.49929 * 214.97955 * 23 21 2 40 40 H 1.09000 * 117.49767 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6927 -0.2302 2.4203 6 8 0.9944 0.7584 2.5318 7 6 2.1807 -0.9308 3.6277 8 6 2.9799 -2.0722 3.5000 9 6 3.4441 -2.7302 4.6247 10 6 3.1163 -2.2759 5.8833 11 6 2.3090 -1.1326 6.0316 12 6 1.9712 -0.6634 7.3223 13 1 1.9629 -1.3453 8.1598 14 6 1.6477 0.6845 7.5144 15 7 1.9769 1.5714 6.6107 16 14 0.7460 1.2174 9.0611 17 1 0.4910 0.0322 9.9187 18 1 1.5771 2.1971 9.8059 19 1 -0.5464 1.8467 8.6886 20 6 1.8404 -0.4598 4.8904 21 6 2.0399 -0.7212 -1.2492 22 6 2.9863 0.0486 -2.1727 23 6 1.5431 -0.2199 -2.6067 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.5759 -1.4793 1.1072 31 1 3.2393 -2.4390 2.5178 32 1 4.0638 -3.6079 4.5155 33 1 3.4795 -2.7972 6.7566 34 1 1.7524 2.5056 6.7437 35 1 1.2204 0.4184 4.9938 36 1 2.2061 -1.7929 -1.1385 37 1 3.2452 1.0691 -1.8904 38 1 3.7747 -0.5165 -2.6698 39 1 1.3827 -0.9616 -3.3892 40 1 0.8533 0.6240 -2.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534294645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:26 Heat of formation + Delta-G solvation = 0.769083 kcal Electronic energy + Delta-G solvation = -20846.855656 eV Core-core repulsion = 17819.726716 eV Total energy + Delta-G solvation = -3027.128940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94921 -38.08929 -36.83603 -34.04717 -33.69337 -31.23397 -29.55090 -29.24985 -27.22955 -25.32249 -24.23896 -22.30926 -22.21837 -20.95892 -19.34960 -18.90536 -17.75584 -16.76907 -15.78440 -15.28450 -14.82051 -14.54098 -14.38069 -14.14770 -13.78122 -13.18798 -13.08229 -12.81885 -12.60175 -12.40475 -12.01469 -11.84478 -11.62537 -11.47177 -11.18173 -11.08806 -10.92448 -10.74040 -10.68874 -10.52923 -10.46720 -10.15708 -9.93744 -9.67118 -9.21107 -8.80432 -8.56729 -7.60903 -7.50349 -6.78922 -4.40428 2.23718 2.81799 3.08697 3.13521 3.15594 3.51169 3.83094 3.91543 3.94044 4.56408 4.65401 4.84007 4.90879 5.10472 5.23315 5.47206 5.51866 5.62659 5.67794 5.74816 5.82358 5.91351 6.01468 6.04420 6.08949 6.13544 6.16933 6.29661 6.54554 6.59915 6.73209 6.99456 7.02326 7.07668 7.22803 7.39984 7.71950 7.79278 7.94345 8.14985 8.23143 8.52427 8.81780 8.84896 9.02734 10.15937 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026758 B = 0.004529 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.167054 B = 6180.956018 C = 6890.958590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.207 3.793 3 C -0.165 4.165 4 N -0.728 5.728 5 C 0.567 3.433 6 O -0.542 6.542 7 C -0.128 4.128 8 C -0.218 4.218 9 C -0.098 4.098 10 C -0.212 4.212 11 C 0.099 3.901 12 C -0.461 4.461 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.784 5.784 16 Si 0.909 3.091 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.092 4.092 21 C -0.157 4.157 22 C -0.182 4.182 23 C -0.171 4.171 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.397 0.603 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.284 0.716 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -2.377 -12.996 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.121 3.879 3 C -0.223 4.223 4 N -0.381 5.381 5 C 0.358 3.642 6 O -0.421 6.421 7 C -0.132 4.132 8 C -0.238 4.238 9 C -0.117 4.117 10 C -0.232 4.232 11 C 0.096 3.904 12 C -0.490 4.490 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.408 5.408 16 Si 0.733 3.267 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.196 1.196 20 C -0.112 4.112 21 C -0.175 4.175 22 C -0.219 4.219 23 C -0.208 4.208 24 H 0.099 0.901 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.233 0.767 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.425 -1.393 -12.964 13.046 hybrid contribution 0.075 -0.195 0.522 0.562 sum -0.350 -1.588 -12.443 12.548 Atomic orbital electron populations 1.22199 0.94378 1.02082 1.03135 1.19617 0.93850 0.91705 0.82750 1.22333 1.00981 0.95814 1.03170 1.46074 1.54840 1.32300 1.04921 1.18761 0.78879 0.83440 0.83101 1.90624 1.38225 1.26392 1.86834 1.19513 1.03305 0.97705 0.92631 1.20352 1.07540 0.99373 0.96501 1.20435 0.99713 0.98445 0.93084 1.21102 1.04529 1.02152 0.95412 1.17604 0.88869 0.90648 0.93261 1.19615 1.40731 0.93967 0.94675 0.90088 1.25955 0.93697 0.96619 0.98259 1.69801 1.33789 1.03266 1.33983 0.86246 0.79769 0.79336 0.81331 1.18353 1.19934 1.19566 1.21632 0.99555 1.00552 0.89462 1.22483 1.04771 0.99335 0.90939 1.23194 0.93132 1.02256 1.03273 1.22943 0.97549 1.03452 0.96852 0.90051 0.92425 0.92858 0.92505 0.92493 0.89902 0.76738 0.89287 0.88965 0.88661 0.90537 0.84861 0.87527 0.87865 0.89001 0.88827 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.18 37.16 0.30 -2.03 16 2 C 0.21 2.96 0.91 -131.82 -0.12 2.83 16 3 C -0.17 -2.43 6.98 37.16 0.26 -2.17 16 4 N -0.73 -12.18 5.06 -48.53 -0.25 -12.42 16 5 C 0.57 12.24 7.19 -12.31 -0.09 12.15 16 6 O -0.54 -13.05 12.54 5.32 0.07 -12.98 16 7 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 8 C -0.22 -4.60 9.55 -38.92 -0.37 -4.97 16 9 C -0.10 -2.11 10.01 -39.72 -0.40 -2.51 16 10 C -0.21 -5.06 9.78 -38.81 -0.38 -5.44 16 11 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 12 C -0.46 -12.16 9.05 -37.73 -0.34 -12.50 16 13 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 14 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 15 N -0.78 -20.81 10.97 55.55 0.61 -20.20 16 16 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 17 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 19 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 20 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 21 C -0.16 -1.75 5.34 -90.62 -0.48 -2.23 16 22 C -0.18 -1.77 9.51 -26.69 -0.25 -2.03 16 23 C -0.17 -1.59 9.40 -26.69 -0.25 -1.84 16 24 H 0.08 1.45 6.17 -51.93 -0.32 1.13 16 25 H 0.06 0.70 7.00 -51.93 -0.36 0.34 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.81 7.22 -51.93 -0.38 0.44 16 28 H 0.06 0.70 7.18 -51.93 -0.37 0.33 16 29 H 0.08 1.50 6.16 -51.93 -0.32 1.18 16 30 H 0.40 5.88 6.42 -40.82 -0.26 5.62 16 31 H 0.09 1.56 6.38 -52.49 -0.33 1.22 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 35 H 0.13 3.84 5.77 -52.49 -0.30 3.54 16 36 H 0.11 1.12 8.04 -51.92 -0.42 0.70 16 37 H 0.10 1.04 5.82 -51.93 -0.30 0.74 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.89 7.08 -51.93 -0.37 0.52 16 LS Contribution 320.15 15.07 4.82 4.82 Total: -1.00 -28.71 320.15 -8.92 -37.63 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -5.40 Total: 12.69 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -3.74 Total: -23.34 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.36 Total: -32.62 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.71 -8.92 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534294645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.401 kcal (2) G-P(sol) polarization free energy of solvation -28.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds