Wall clock time and date at job start Mon Mar 30 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47474 * 2 1 4 4 N 1.46499 * 109.47083 * 120.00387 * 2 1 3 5 5 C 1.34783 * 119.99632 * 299.99528 * 4 2 1 6 6 O 1.21550 * 119.99922 * 359.97438 * 5 4 2 7 7 C 1.47883 * 119.99833 * 179.72764 * 5 4 2 8 8 C 1.39916 * 120.02667 * 359.97438 * 7 5 4 9 9 C 1.38330 * 120.36295 * 179.76471 * 8 7 5 10 10 C 1.37758 * 120.40656 * 0.51900 * 9 8 7 11 11 C 1.40745 * 120.04005 * 359.73902 * 10 9 8 12 12 C 1.41433 * 120.17794 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00237 * 334.93089 * 12 11 10 14 14 C 1.39938 * 120.00394 * 154.93239 * 12 11 10 15 15 N 1.30831 * 119.99567 * 342.57987 * 14 12 11 16 16 Si 1.86800 * 120.00402 * 162.57858 * 14 12 11 17 17 H 1.48497 * 109.47163 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46790 * 120.00106 * 16 14 12 19 19 H 1.48494 * 109.47218 * 240.00019 * 16 14 12 20 20 C 1.38999 * 120.02574 * 180.27918 * 7 5 4 21 21 C 1.52996 * 109.46949 * 240.00040 * 2 1 3 22 22 C 1.53003 * 117.50295 * 123.74906 * 21 2 1 23 23 C 1.53001 * 117.50002 * 55.08809 * 21 2 1 24 24 H 1.09007 * 109.46597 * 300.00241 * 1 2 3 25 25 H 1.09006 * 109.47088 * 59.99578 * 1 2 3 26 26 H 1.08997 * 109.47650 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47335 * 180.02562 * 3 2 1 28 28 H 1.09006 * 109.47307 * 300.00288 * 3 2 1 29 29 H 1.09004 * 109.46983 * 59.99958 * 3 2 1 30 30 H 0.96991 * 120.00523 * 119.99915 * 4 2 1 31 31 H 1.08001 * 119.82302 * 0.02562 * 8 7 5 32 32 H 1.07993 * 119.79724 * 180.25786 * 9 8 7 33 33 H 1.08001 * 119.97887 * 179.76629 * 10 9 8 34 34 H 0.96997 * 119.99797 * 179.97438 * 15 14 12 35 35 H 1.07997 * 120.20022 * 359.94970 * 20 7 5 36 36 H 1.09008 * 115.55050 * 269.41652 * 21 2 1 37 37 H 1.08999 * 117.49414 * 359.97438 * 22 21 2 38 38 H 1.08996 * 117.50251 * 145.02073 * 22 21 2 39 39 H 1.09005 * 117.49929 * 214.97955 * 23 21 2 40 40 H 1.09000 * 117.49767 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6927 -0.2302 2.4203 6 8 0.9944 0.7584 2.5318 7 6 2.1807 -0.9308 3.6277 8 6 2.9799 -2.0722 3.5000 9 6 3.4441 -2.7302 4.6247 10 6 3.1163 -2.2759 5.8833 11 6 2.3090 -1.1326 6.0316 12 6 1.9712 -0.6634 7.3223 13 1 1.9629 -1.3453 8.1598 14 6 1.6477 0.6845 7.5144 15 7 1.9769 1.5714 6.6107 16 14 0.7460 1.2174 9.0611 17 1 0.4910 0.0322 9.9187 18 1 1.5771 2.1971 9.8059 19 1 -0.5464 1.8467 8.6886 20 6 1.8404 -0.4598 4.8904 21 6 2.0399 -0.7212 -1.2492 22 6 2.9863 0.0486 -2.1727 23 6 1.5431 -0.2199 -2.6067 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.5759 -1.4793 1.1072 31 1 3.2393 -2.4390 2.5178 32 1 4.0638 -3.6079 4.5155 33 1 3.4795 -2.7972 6.7566 34 1 1.7524 2.5056 6.7437 35 1 1.2204 0.4184 4.9938 36 1 2.2061 -1.7929 -1.1385 37 1 3.2452 1.0691 -1.8904 38 1 3.7747 -0.5165 -2.6698 39 1 1.3827 -0.9616 -3.3892 40 1 0.8533 0.6240 -2.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534294645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:25 Heat of formation + Delta-G solvation = -15.241520 kcal Electronic energy + Delta-G solvation = -20847.549928 eV Core-core repulsion = 17819.726716 eV Total energy + Delta-G solvation = -3027.823212 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37100 -39.49873 -38.46085 -35.65833 -35.26180 -32.77874 -31.35388 -30.91878 -28.40747 -27.21605 -25.52080 -23.74448 -23.02062 -22.80097 -20.94961 -20.18209 -19.44287 -18.16507 -17.22520 -16.99690 -16.49385 -15.95815 -15.84479 -15.36020 -15.27187 -14.93333 -14.50469 -14.33914 -14.26733 -13.61804 -13.52547 -13.16035 -13.08373 -12.89039 -12.77935 -12.52230 -12.46258 -12.17838 -11.96117 -11.89432 -11.71764 -11.49376 -11.30512 -11.08269 -11.04142 -10.47163 -10.02779 -9.45761 -9.37742 -8.66602 -6.38516 0.40928 1.00676 1.35953 1.46238 1.52211 2.13982 2.19444 2.23808 2.79745 2.95829 3.60885 3.70540 3.96295 4.03922 4.08029 4.12454 4.30894 4.42525 4.44631 4.59178 4.69135 4.69997 4.84313 4.90937 4.92214 4.96233 5.04691 5.09145 5.16357 5.20042 5.30255 5.32310 5.36503 5.40089 5.52458 5.70402 5.87857 5.94109 6.05702 6.29386 6.54530 6.76265 6.88217 6.95042 7.41124 8.30455 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026758 B = 0.004529 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.167054 B = 6180.956018 C = 6890.958590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.202 3.798 3 C -0.161 4.161 4 N -0.707 5.707 5 C 0.563 3.437 6 O -0.576 6.576 7 C -0.140 4.140 8 C -0.199 4.199 9 C -0.096 4.096 10 C -0.219 4.219 11 C 0.067 3.933 12 C -0.499 4.499 13 H 0.083 0.917 14 C 0.030 3.970 15 N -0.826 5.826 16 Si 0.982 3.018 17 H -0.251 1.251 18 H -0.264 1.264 19 H -0.271 1.271 20 C -0.131 4.131 21 C -0.168 4.168 22 C -0.178 4.178 23 C -0.157 4.157 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.409 0.591 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 -4.250 -15.292 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.117 3.883 3 C -0.219 4.219 4 N -0.360 5.360 5 C 0.352 3.648 6 O -0.457 6.457 7 C -0.143 4.143 8 C -0.218 4.218 9 C -0.114 4.114 10 C -0.239 4.239 11 C 0.065 3.935 12 C -0.528 4.528 13 H 0.101 0.899 14 C -0.185 4.185 15 N -0.452 5.452 16 Si 0.803 3.197 17 H -0.174 1.174 18 H -0.188 1.188 19 H -0.196 1.196 20 C -0.151 4.151 21 C -0.186 4.186 22 C -0.215 4.215 23 C -0.195 4.195 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.247 0.753 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.520 -3.304 -15.299 15.660 hybrid contribution -0.143 0.289 1.040 1.089 sum 0.378 -3.015 -14.258 14.578 Atomic orbital electron populations 1.22151 0.94738 1.02155 1.02423 1.19823 0.93687 0.91678 0.83118 1.22279 1.01085 0.96145 1.02346 1.45937 1.53737 1.32195 1.04153 1.18620 0.78888 0.83089 0.84164 1.90623 1.39781 1.27865 1.87470 1.19869 1.03312 0.98594 0.92511 1.20862 1.04790 0.97383 0.98790 1.20922 0.99208 0.99406 0.91874 1.21409 1.03828 1.01248 0.97365 1.17948 0.90019 0.92060 0.93458 1.19887 1.43050 0.94873 0.95023 0.89888 1.26843 0.93849 0.96266 1.01504 1.69900 1.35435 1.03595 1.36255 0.85158 0.78211 0.79113 0.77249 1.17440 1.18831 1.19554 1.21435 1.01471 1.00887 0.91326 1.22354 1.06694 0.99697 0.89888 1.23266 0.93904 1.01910 1.02385 1.23061 0.97164 1.03603 0.95641 0.94005 0.89876 0.92329 0.92182 0.89938 0.94057 0.75323 0.84707 0.84420 0.87434 0.90365 0.88369 0.86251 0.88444 0.87347 0.86853 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 8.18 71.98 0.59 -3.85 16 2 C 0.20 5.46 0.91 3.60 0.00 5.46 16 3 C -0.16 -4.63 6.98 71.98 0.50 -4.13 16 4 N -0.71 -22.72 5.06 -425.73 -2.15 -24.87 16 5 C 0.56 24.75 7.19 86.80 0.62 25.38 16 6 O -0.58 -29.39 12.54 -3.87 -0.05 -29.44 16 7 C -0.14 -6.68 5.87 -20.13 -0.12 -6.80 16 8 C -0.20 -7.90 9.55 22.70 0.22 -7.68 16 9 C -0.10 -3.86 10.01 22.18 0.22 -3.63 16 10 C -0.22 -10.37 9.78 22.77 0.22 -10.14 16 11 C 0.07 3.72 5.57 -21.32 -0.12 3.60 16 12 C -0.50 -27.59 9.05 23.47 0.21 -27.37 16 13 H 0.08 4.34 7.90 -2.91 -0.02 4.32 16 14 C 0.03 1.59 5.14 85.25 0.44 2.03 16 15 N -0.83 -46.72 10.97 21.83 0.24 -46.48 16 16 Si 0.98 40.17 29.59 68.60 2.03 42.20 16 17 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 18 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 C -0.13 -7.35 8.23 23.01 0.19 -7.16 16 21 C -0.17 -3.15 5.34 -10.79 -0.06 -3.21 16 22 C -0.18 -2.79 9.51 30.62 0.29 -2.50 16 23 C -0.16 -2.29 9.40 30.62 0.29 -2.00 16 24 H 0.04 1.53 6.17 -2.38 -0.01 1.51 16 25 H 0.08 1.88 7.00 -2.38 -0.02 1.86 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.06 1.66 7.22 -2.39 -0.02 1.64 16 28 H 0.08 1.90 7.18 -2.38 -0.02 1.88 16 29 H 0.04 1.55 6.16 -2.39 -0.01 1.53 16 30 H 0.41 10.84 6.42 -92.71 -0.60 10.25 16 31 H 0.14 4.07 6.38 -2.91 -0.02 4.05 16 32 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 33 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 34 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 35 H 0.10 6.15 5.77 -2.91 -0.02 6.14 16 36 H 0.12 1.98 8.04 -2.38 -0.02 1.96 16 37 H 0.10 1.66 5.82 -2.39 -0.01 1.65 16 38 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.10 1.42 7.08 -2.39 -0.02 1.40 16 Total: -1.00 -68.07 320.15 4.04 -64.03 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.46 Total: 36.58 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 3.50 Total: -42.02 kcal Atomic # 7 Polarization: -69.44 SS G_CDS: -1.91 Total: -71.35 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -68.07 4.04 -64.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534294645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.789 kcal (2) G-P(sol) polarization free energy of solvation -68.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds