Wall clock time and date at job start Mon Mar 30 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47359 * 2 1 4 4 N 1.46897 * 109.47443 * 120.00260 * 2 1 3 5 5 C 1.46901 * 111.00130 * 163.19509 * 4 2 1 6 6 C 1.50702 * 109.46962 * 288.32786 * 5 4 2 7 7 H 1.08007 * 119.99742 * 4.87860 * 6 5 4 8 8 C 1.37875 * 120.00215 * 184.87317 * 6 5 4 9 9 N 1.31518 * 120.00028 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99750 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47208 * 90.00025 * 10 8 6 12 12 H 1.48502 * 109.46793 * 209.99874 * 10 8 6 13 13 H 1.48499 * 109.47094 * 329.99531 * 10 8 6 14 14 C 1.46903 * 110.99871 * 287.14887 * 4 2 1 15 15 C 1.50695 * 109.47060 * 77.57055 * 14 4 2 16 16 C 1.34005 * 124.92629 * 68.97944 * 15 14 4 17 17 C 1.46781 * 106.18429 * 180.02562 * 16 15 14 18 18 C 1.39403 * 134.37102 * 179.31473 * 17 16 15 19 19 C 1.36746 * 119.71639 * 180.02562 * 18 17 16 20 20 C 1.38740 * 120.41507 * 0.02562 * 19 18 17 21 21 C 1.37843 * 120.69078 * 359.97438 * 20 19 18 22 22 C 1.38948 * 119.81450 * 0.27454 * 21 20 19 23 23 O 1.34452 * 124.91779 * 248.32796 * 15 14 4 24 24 H 1.09002 * 109.46801 * 309.47493 * 1 2 3 25 25 H 1.09003 * 109.47390 * 69.47375 * 1 2 3 26 26 H 1.08997 * 109.47136 * 189.47718 * 1 2 3 27 27 H 1.09000 * 109.46881 * 240.00306 * 2 1 3 28 28 H 1.08994 * 109.47871 * 171.83153 * 3 2 1 29 29 H 1.09003 * 109.47450 * 291.83578 * 3 2 1 30 30 H 1.09003 * 109.46891 * 51.83228 * 3 2 1 31 31 H 1.08995 * 109.47110 * 48.33109 * 5 4 2 32 32 H 1.08999 * 109.46878 * 168.33446 * 5 4 2 33 33 H 0.97004 * 119.99338 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47036 * 317.56373 * 14 4 2 35 35 H 1.08999 * 109.46816 * 197.56641 * 14 4 2 36 36 H 1.07997 * 126.90487 * 359.36764 * 16 15 14 37 37 H 1.07995 * 120.14451 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.78628 * 179.97438 * 19 18 17 39 39 H 1.08005 * 119.64969 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.09502 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4330 -1.0652 1.0519 6 6 3.5540 -2.1937 0.0605 7 1 2.6806 -2.5413 -0.4714 8 6 4.7797 -2.7824 -0.1677 9 7 4.8854 -3.7669 -1.0334 10 14 6.2902 -2.1816 0.7526 11 1 6.4365 -2.9468 2.0168 12 1 7.4961 -2.3832 -0.0904 13 1 6.1389 -0.7373 1.0627 14 6 1.8140 0.1268 2.4012 15 6 0.3680 0.0515 2.8190 16 6 -0.2306 -1.0386 3.3180 17 6 -1.6235 -0.6567 3.5798 18 6 -2.7407 -1.3257 4.0775 19 6 -3.9295 -0.6614 4.2006 20 6 -4.0300 0.6727 3.8329 21 6 -2.9362 1.3506 3.3389 22 6 -1.7202 0.6927 3.2009 23 8 -0.5052 1.0720 2.7566 24 1 -0.3633 0.6534 0.7933 25 1 -0.3634 0.3603 -0.9624 26 1 -0.3633 -1.0136 0.1692 27 1 1.8933 -0.5138 -0.8900 28 1 3.1201 1.4460 0.1460 29 1 1.8008 1.9125 -0.9539 30 1 1.5624 1.9967 0.8080 31 1 4.0001 -0.2056 0.6950 32 1 3.8268 -1.3853 2.0165 33 1 5.7478 -4.1813 -1.1936 34 1 2.0762 1.1623 2.1843 35 1 2.4450 -0.2465 3.2077 36 1 0.2184 -2.0067 3.4833 37 1 -2.6676 -2.3642 4.3646 38 1 -4.7959 -1.1787 4.5856 39 1 -4.9750 1.1855 3.9357 40 1 -3.0252 2.3891 3.0560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534341815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:03 Heat of formation + Delta-G solvation = 40.683468 kcal Electronic energy + Delta-G solvation = -21107.878523 eV Core-core repulsion = 18082.480401 eV Total energy + Delta-G solvation = -3025.398122 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.35204 -38.26831 -37.51821 -32.88418 -32.72053 -31.29154 -30.37581 -30.05726 -27.41220 -26.75143 -25.03404 -22.77435 -21.86008 -21.63766 -20.85845 -19.00270 -17.23631 -16.86379 -16.55090 -16.24422 -15.40049 -15.19796 -14.59763 -14.25106 -14.03663 -13.67566 -13.25375 -13.07500 -12.86379 -12.47039 -12.44212 -12.29828 -12.07742 -11.86952 -11.72323 -11.26498 -11.13696 -10.89597 -10.69246 -10.59037 -10.42387 -10.10663 -9.97597 -9.86351 -9.33815 -8.59944 -8.54020 -7.94611 -7.47987 -6.07844 -4.05271 0.99586 1.41001 2.57422 2.85046 3.25421 3.33547 3.33865 3.77176 4.38498 4.54141 4.70082 4.78385 4.92298 5.20482 5.24502 5.30741 5.34954 5.42642 5.49187 5.55304 5.72577 5.78091 5.86025 5.93552 5.98097 6.05416 6.19210 6.25449 6.29075 6.34896 6.40571 6.45103 6.62509 6.66831 6.70770 6.77445 6.89779 6.97508 7.37237 7.54151 7.81971 7.94508 8.60673 9.01794 9.53103 11.05282 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.004474 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.388800 B = 6257.434859 C = 6529.683075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 C -0.183 4.183 4 N -0.513 5.513 5 C 0.162 3.838 6 C -0.507 4.507 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.899 5.899 10 Si 0.873 3.127 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.110 3.890 15 C 0.064 3.936 16 C -0.193 4.193 17 C -0.122 4.122 18 C -0.073 4.073 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.108 4.108 22 C 0.047 3.953 23 O -0.196 6.196 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.052 0.948 31 H -0.005 1.005 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.159 0.841 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.679 9.938 9.515 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 C -0.242 4.242 4 N -0.237 5.237 5 C 0.037 3.963 6 C -0.545 4.545 7 H 0.099 0.901 8 C -0.132 4.132 9 N -0.538 5.538 10 Si 0.701 3.299 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.193 1.193 14 C -0.018 4.018 15 C 0.016 3.984 16 C -0.213 4.213 17 C -0.123 4.123 18 C -0.091 4.091 19 C -0.159 4.159 20 C -0.122 4.122 21 C -0.127 4.127 22 C 0.000 4.000 23 O -0.098 6.098 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.013 0.987 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.177 0.823 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.727 9.631 9.380 19.214 hybrid contribution 1.316 0.744 0.332 1.548 sum -12.411 10.375 9.711 18.868 Atomic orbital electron populations 1.22025 0.95673 1.02223 1.00687 1.21661 0.94488 0.91750 0.94932 1.22456 1.01531 0.98814 1.01393 1.62120 1.22295 1.39403 0.99885 1.20241 0.82657 0.96004 0.97403 1.20980 0.95981 1.15502 1.22083 0.90072 1.24879 0.98538 0.94699 0.95096 1.69892 1.24965 1.24135 1.34774 0.86898 0.83168 0.79673 0.80207 1.20127 1.21200 1.19310 1.20788 0.86154 0.98882 0.96013 1.22364 0.92333 0.85474 0.98181 1.22204 0.91554 1.00148 1.07370 1.20055 0.94988 0.94020 1.03256 1.20306 0.91119 0.99724 0.97986 1.20713 0.97652 0.94892 1.02680 1.20827 0.97503 0.94686 0.99226 1.19891 0.88746 1.00207 1.03809 1.19616 0.86050 0.93901 1.00438 1.83981 1.17417 1.38688 1.69730 0.92601 0.93375 0.92142 0.88405 0.92359 0.92616 0.92895 0.98748 0.95666 0.92629 0.92340 0.88304 0.82331 0.85698 0.85748 0.85252 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.38 37.16 0.31 -2.24 16 2 C 0.08 1.51 2.77 -67.72 -0.19 1.32 16 3 C -0.18 -3.00 8.12 37.16 0.30 -2.69 16 4 N -0.51 -10.25 4.35 -229.52 -1.00 -11.25 16 5 C 0.16 3.73 3.71 -4.97 -0.02 3.71 16 6 C -0.51 -13.96 9.00 -34.44 -0.31 -14.27 16 7 H 0.08 2.46 7.72 -52.48 -0.41 2.06 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 10 Si 0.87 20.89 27.37 -169.99 -4.65 16.23 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.13 6.68 56.52 0.38 -5.75 16 14 C 0.11 1.84 5.22 -4.98 -0.03 1.81 16 15 C 0.06 1.04 4.57 -35.80 -0.16 0.88 16 16 C -0.19 -3.09 11.01 -37.62 -0.41 -3.51 16 17 C -0.12 -1.83 6.40 -105.16 -0.67 -2.50 16 18 C -0.07 -0.91 10.05 -39.69 -0.40 -1.31 16 19 C -0.14 -1.48 9.98 -39.94 -0.40 -1.88 16 20 C -0.10 -1.06 10.01 -39.54 -0.40 -1.46 16 21 C -0.11 -1.30 10.07 -39.46 -0.40 -1.70 16 22 C 0.05 0.71 7.42 -38.47 -0.29 0.42 16 23 O -0.20 -3.14 8.71 3.89 0.03 -3.11 16 24 H 0.06 0.94 4.54 -51.93 -0.24 0.70 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.10 2.10 6.94 -51.93 -0.36 1.74 16 28 H 0.06 1.00 6.66 -51.93 -0.35 0.65 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.81 6.42 -51.93 -0.33 0.48 16 31 H -0.01 -0.12 5.98 -51.93 -0.31 -0.43 16 32 H 0.03 0.57 6.83 -51.93 -0.35 0.22 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.06 0.93 5.34 -51.93 -0.28 0.65 16 35 H 0.10 1.55 7.62 -51.93 -0.40 1.15 16 36 H 0.16 2.47 8.06 -52.49 -0.42 2.04 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -30.14 318.53 -8.76 -38.90 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.56 Total: 2.30 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -3.15 Total: -21.55 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.23 Total: -37.57 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: 0.03 Total: -3.11 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.65 Total: 16.23 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.14 -8.76 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534341815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.581 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds