Wall clock time and date at job start Mon Mar 30 2020 02:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47359 * 2 1 4 4 N 1.46897 * 109.47443 * 120.00260 * 2 1 3 5 5 C 1.46901 * 111.00130 * 163.19509 * 4 2 1 6 6 C 1.50702 * 109.46962 * 288.32786 * 5 4 2 7 7 H 1.08007 * 119.99742 * 4.87860 * 6 5 4 8 8 C 1.37875 * 120.00215 * 184.87317 * 6 5 4 9 9 N 1.31518 * 120.00028 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99750 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47208 * 90.00025 * 10 8 6 12 12 H 1.48502 * 109.46793 * 209.99874 * 10 8 6 13 13 H 1.48499 * 109.47094 * 329.99531 * 10 8 6 14 14 C 1.46903 * 110.99871 * 287.14887 * 4 2 1 15 15 C 1.50695 * 109.47060 * 77.57055 * 14 4 2 16 16 C 1.34005 * 124.92629 * 68.97944 * 15 14 4 17 17 C 1.46781 * 106.18429 * 180.02562 * 16 15 14 18 18 C 1.39403 * 134.37102 * 179.31473 * 17 16 15 19 19 C 1.36746 * 119.71639 * 180.02562 * 18 17 16 20 20 C 1.38740 * 120.41507 * 0.02562 * 19 18 17 21 21 C 1.37843 * 120.69078 * 359.97438 * 20 19 18 22 22 C 1.38948 * 119.81450 * 0.27454 * 21 20 19 23 23 O 1.34452 * 124.91779 * 248.32796 * 15 14 4 24 24 H 1.09002 * 109.46801 * 309.47493 * 1 2 3 25 25 H 1.09003 * 109.47390 * 69.47375 * 1 2 3 26 26 H 1.08997 * 109.47136 * 189.47718 * 1 2 3 27 27 H 1.09000 * 109.46881 * 240.00306 * 2 1 3 28 28 H 1.08994 * 109.47871 * 171.83153 * 3 2 1 29 29 H 1.09003 * 109.47450 * 291.83578 * 3 2 1 30 30 H 1.09003 * 109.46891 * 51.83228 * 3 2 1 31 31 H 1.08995 * 109.47110 * 48.33109 * 5 4 2 32 32 H 1.08999 * 109.46878 * 168.33446 * 5 4 2 33 33 H 0.97004 * 119.99338 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.47036 * 317.56373 * 14 4 2 35 35 H 1.08999 * 109.46816 * 197.56641 * 14 4 2 36 36 H 1.07997 * 126.90487 * 359.36764 * 16 15 14 37 37 H 1.07995 * 120.14451 * 0.02562 * 18 17 16 38 38 H 1.08001 * 119.78628 * 179.97438 * 19 18 17 39 39 H 1.08005 * 119.64969 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.09502 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4330 -1.0652 1.0519 6 6 3.5540 -2.1937 0.0605 7 1 2.6806 -2.5413 -0.4714 8 6 4.7797 -2.7824 -0.1677 9 7 4.8854 -3.7669 -1.0334 10 14 6.2902 -2.1816 0.7526 11 1 6.4365 -2.9468 2.0168 12 1 7.4961 -2.3832 -0.0904 13 1 6.1389 -0.7373 1.0627 14 6 1.8140 0.1268 2.4012 15 6 0.3680 0.0515 2.8190 16 6 -0.2306 -1.0386 3.3180 17 6 -1.6235 -0.6567 3.5798 18 6 -2.7407 -1.3257 4.0775 19 6 -3.9295 -0.6614 4.2006 20 6 -4.0300 0.6727 3.8329 21 6 -2.9362 1.3506 3.3389 22 6 -1.7202 0.6927 3.2009 23 8 -0.5052 1.0720 2.7566 24 1 -0.3633 0.6534 0.7933 25 1 -0.3634 0.3603 -0.9624 26 1 -0.3633 -1.0136 0.1692 27 1 1.8933 -0.5138 -0.8900 28 1 3.1201 1.4460 0.1460 29 1 1.8008 1.9125 -0.9539 30 1 1.5624 1.9967 0.8080 31 1 4.0001 -0.2056 0.6950 32 1 3.8268 -1.3853 2.0165 33 1 5.7478 -4.1813 -1.1936 34 1 2.0762 1.1623 2.1843 35 1 2.4450 -0.2465 3.2077 36 1 0.2184 -2.0067 3.4833 37 1 -2.6676 -2.3642 4.3646 38 1 -4.7959 -1.1787 4.5856 39 1 -4.9750 1.1855 3.9357 40 1 -3.0252 2.3891 3.0560 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534341815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:03 Heat of formation + Delta-G solvation = 22.936502 kcal Electronic energy + Delta-G solvation = -21108.648089 eV Core-core repulsion = 18082.480401 eV Total energy + Delta-G solvation = -3026.167689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.45524 -39.63344 -38.60814 -34.87890 -33.94254 -32.77773 -31.52608 -31.25706 -28.97861 -28.12888 -26.48914 -23.79568 -23.66651 -22.69452 -22.05562 -20.48679 -18.86319 -18.26737 -17.66871 -17.57516 -16.76180 -16.29710 -16.22884 -15.92889 -15.12719 -14.80997 -14.75925 -14.52921 -14.35123 -13.95434 -13.72662 -13.45721 -13.36080 -13.17918 -12.87962 -12.82051 -12.58470 -12.41986 -12.19704 -11.98945 -11.89776 -11.78979 -11.56565 -11.43812 -10.96248 -10.75085 -9.51700 -9.06300 -9.01057 -8.25761 -6.28799 0.01422 0.45852 1.37317 1.38089 1.41797 1.48945 1.74032 2.36308 2.83295 3.06509 3.24196 3.47578 3.79235 4.01819 4.08423 4.15644 4.23754 4.28604 4.34775 4.42628 4.45223 4.52426 4.60646 4.67616 4.72046 4.84683 4.88624 4.93972 4.97187 5.01519 5.12690 5.25924 5.37878 5.40931 5.41942 5.54483 5.55171 5.56820 5.83312 5.98604 6.24273 6.38077 6.61729 6.77255 7.33946 8.91203 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029673 B = 0.004474 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.388800 B = 6257.434859 C = 6529.683075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.078 3.922 3 C -0.174 4.174 4 N -0.530 5.530 5 C 0.173 3.827 6 C -0.511 4.511 7 H 0.033 0.967 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.947 3.053 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.246 1.246 14 C 0.113 3.887 15 C 0.052 3.948 16 C -0.204 4.204 17 C -0.149 4.149 18 C -0.089 4.089 19 C -0.134 4.134 20 C -0.092 4.092 21 C -0.118 4.118 22 C 0.024 3.976 23 O -0.204 6.204 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.000 1.000 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 12.138 11.438 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.030 4.030 3 C -0.232 4.232 4 N -0.254 5.254 5 C 0.046 3.954 6 C -0.550 4.550 7 H 0.051 0.949 8 C -0.189 4.189 9 N -0.591 5.591 10 Si 0.770 3.230 11 H -0.190 1.190 12 H -0.211 1.211 13 H -0.169 1.169 14 C -0.014 4.014 15 C 0.004 3.996 16 C -0.224 4.224 17 C -0.149 4.149 18 C -0.107 4.107 19 C -0.152 4.152 20 C -0.110 4.110 21 C -0.136 4.136 22 C -0.022 4.022 23 O -0.106 6.106 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.127 0.873 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.186 0.814 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.126 11.851 11.316 22.300 hybrid contribution 1.489 0.011 -0.271 1.513 sum -13.638 11.861 11.045 21.182 Atomic orbital electron populations 1.21901 0.94453 1.01102 1.01874 1.21604 0.95386 0.92892 0.93116 1.22345 1.00959 0.96982 1.02913 1.61951 1.20405 1.41466 1.01568 1.19984 0.84789 0.94377 0.96209 1.21206 0.94523 1.16713 1.22535 0.94863 1.25830 1.02272 0.94746 0.96046 1.70063 1.26009 1.26066 1.36990 0.85727 0.78181 0.80324 0.78782 1.19018 1.21105 1.16946 1.20769 0.87009 0.99002 0.94657 1.22128 0.92275 0.85894 0.99261 1.22320 0.92771 0.99900 1.07405 1.20245 0.95083 0.94730 1.04889 1.20617 0.91302 1.00569 0.98201 1.21174 0.97769 0.95205 1.01059 1.21363 0.98335 0.94553 0.96720 1.20330 0.88030 1.01410 1.03814 1.20104 0.86421 0.94369 1.01347 1.83920 1.17956 1.38510 1.70256 0.91724 0.91746 0.94400 0.92156 0.93072 0.91019 0.91401 0.98211 0.94697 0.92521 0.90972 0.87327 0.82999 0.84636 0.82414 0.81351 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.38 71.98 0.60 -4.12 16 2 C 0.08 3.00 2.77 44.91 0.12 3.13 16 3 C -0.17 -5.47 8.12 71.98 0.58 -4.88 16 4 N -0.53 -21.50 4.35 -880.08 -3.83 -25.33 16 5 C 0.17 7.96 3.71 85.56 0.32 8.28 16 6 C -0.51 -29.26 9.00 25.60 0.23 -29.03 16 7 H 0.03 2.16 7.72 -2.91 -0.02 2.14 16 8 C 0.01 0.46 5.47 84.65 0.46 0.93 16 9 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 10 Si 0.95 43.12 27.37 68.60 1.88 45.00 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.25 -10.25 6.68 99.48 0.67 -9.58 16 14 C 0.11 3.73 5.22 85.55 0.45 4.17 16 15 C 0.05 1.69 4.57 24.72 0.11 1.80 16 16 C -0.20 -6.68 11.01 23.54 0.26 -6.42 16 17 C -0.15 -4.39 6.40 -20.21 -0.13 -4.52 16 18 C -0.09 -2.08 10.05 22.20 0.22 -1.86 16 19 C -0.13 -2.35 9.98 22.04 0.22 -2.14 16 20 C -0.09 -1.51 10.01 22.30 0.22 -1.28 16 21 C -0.12 -2.51 10.07 22.35 0.23 -2.28 16 22 C 0.02 0.70 7.42 22.99 0.17 0.87 16 23 O -0.20 -6.39 8.71 -8.99 -0.08 -6.47 16 24 H 0.06 2.15 4.54 -2.39 -0.01 2.13 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 2.73 6.94 -2.39 -0.02 2.72 16 28 H 0.05 1.68 6.66 -2.39 -0.02 1.66 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.94 6.42 -2.39 -0.02 1.92 16 31 H 0.00 0.01 5.98 -2.39 -0.01 0.00 16 32 H 0.03 1.55 6.83 -2.39 -0.02 1.53 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.07 2.17 5.34 -2.39 -0.01 2.16 16 35 H 0.11 3.30 7.62 -2.39 -0.02 3.29 16 36 H 0.15 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 38 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 39 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -68.42 318.53 3.33 -65.09 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.99 Total: 18.21 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 4.07 Total: -37.35 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -3.53 Total: -84.48 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.08 Total: -6.47 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.00 kcal Total: -68.42 3.33 -65.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534341815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.026 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds