Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47152 * 2 1 4 4 N 1.46909 * 109.46594 * 119.99538 * 2 1 3 5 5 C 1.46901 * 110.99446 * 168.62100 * 4 2 1 6 6 C 1.50699 * 109.47218 * 293.95242 * 5 4 2 7 7 H 1.08001 * 120.00002 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99763 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99781 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46876 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47172 * 119.99873 * 10 8 6 13 13 H 1.48496 * 109.46876 * 240.00165 * 10 8 6 14 14 C 1.46900 * 110.99922 * 292.57696 * 4 2 1 15 15 C 1.50703 * 109.46707 * 159.56910 * 14 4 2 16 16 C 1.37864 * 120.01864 * 263.18217 * 15 14 4 17 17 C 1.38723 * 120.68819 * 179.97438 * 16 15 14 18 18 C 1.37761 * 120.27543 * 0.02562 * 17 16 15 19 19 C 1.39379 * 119.60340 * 0.02562 * 18 17 16 20 20 C 1.46787 * 134.34922 * 179.97438 * 19 18 17 21 21 C 1.33982 * 106.18530 * 180.02562 * 20 19 18 22 22 O 1.34444 * 110.16153 * 0.02562 * 21 20 19 23 23 C 1.34829 * 110.89780 * 359.73620 * 22 21 20 24 24 H 1.08992 * 109.47144 * 299.76817 * 1 2 3 25 25 H 1.09006 * 109.46442 * 59.76626 * 1 2 3 26 26 H 1.08998 * 109.47267 * 179.76223 * 1 2 3 27 27 H 1.08991 * 109.47355 * 239.99773 * 2 1 3 28 28 H 1.08991 * 109.46815 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46736 * 299.99739 * 3 2 1 30 30 H 1.09003 * 109.47073 * 59.99217 * 3 2 1 31 31 H 1.08995 * 109.46952 * 53.96069 * 5 4 2 32 32 H 1.09003 * 109.46543 * 173.95708 * 5 4 2 33 33 H 0.96998 * 119.99352 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47025 * 279.56544 * 14 4 2 35 35 H 1.08996 * 109.47562 * 39.56712 * 14 4 2 36 36 H 1.07993 * 119.65401 * 359.97213 * 16 15 14 37 37 H 1.08001 * 119.85616 * 179.97438 * 17 16 15 38 38 H 1.08000 * 120.19467 * 179.97438 * 18 17 16 39 39 H 1.08000 * 126.90144 * 0.02716 * 20 19 18 40 40 H 1.08003 * 124.92027 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 3.4627 -0.9509 1.1060 6 6 3.7262 -1.9321 -0.0070 7 1 2.9040 -2.3242 -0.5871 8 6 5.0171 -2.3293 -0.2846 9 7 6.0184 -1.8514 0.4216 10 14 5.3438 -3.5450 -1.6647 11 1 4.0582 -3.9280 -2.3016 12 1 6.2309 -2.9179 -2.6771 13 1 6.0020 -4.7560 -1.1120 14 6 1.6986 0.0684 2.4145 15 6 1.7441 -0.8496 3.6088 16 6 0.5811 -1.4105 4.0922 17 6 0.6069 -2.2578 5.1903 18 6 1.7999 -2.5501 5.8141 19 6 2.9826 -1.9888 5.3358 20 6 4.3926 -2.0715 5.7354 21 6 5.0699 -1.2966 4.8776 22 8 4.2270 -0.7421 3.9891 23 6 2.9578 -1.1337 4.2211 24 1 -0.3633 0.5102 0.8920 25 1 -0.3632 0.5175 -0.8880 26 1 -0.3634 -1.0276 -0.0043 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.9863 -0.0176 0.8993 32 1 3.8192 -1.3664 2.0486 33 1 6.9264 -2.1311 0.2265 34 1 2.4262 0.8696 2.5443 35 1 0.7002 0.4957 2.3225 36 1 -0.3597 -1.1877 3.6111 37 1 -0.3123 -2.6894 5.5580 38 1 1.8184 -3.2097 6.6691 39 1 4.8017 -2.6424 6.5558 40 1 6.1384 -1.1399 4.8971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562647309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = 13.094489 kcal Electronic energy + Delta-G solvation = -21646.204430 eV Core-core repulsion = 18619.609960 eV Total energy + Delta-G solvation = -3026.594470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.27676 -39.69445 -38.37155 -34.86789 -34.21090 -32.50302 -31.37662 -30.23932 -28.81596 -27.97417 -26.22018 -24.07663 -23.64419 -23.02790 -21.70872 -20.18557 -18.42374 -18.14456 -17.92558 -17.13794 -17.03320 -16.42082 -16.02221 -15.68785 -15.39359 -14.69759 -14.57362 -14.29425 -14.01369 -13.81524 -13.46140 -13.44752 -13.18857 -13.10913 -12.81313 -12.73388 -12.58421 -12.47438 -12.31539 -12.02533 -11.84989 -11.67136 -11.36873 -11.12169 -10.87262 -10.56447 -9.41383 -9.00158 -8.87108 -8.15870 -6.24375 0.08198 0.54724 1.36236 1.36941 1.50092 1.53836 2.10949 2.39524 2.81476 3.15451 3.49712 3.64766 3.81828 3.99727 4.13689 4.19710 4.33556 4.40031 4.49372 4.51630 4.59158 4.59335 4.73052 4.80612 4.82663 4.86569 5.01160 5.02457 5.11503 5.29961 5.32791 5.40336 5.51847 5.55905 5.56746 5.61519 5.63328 5.71756 5.91384 6.14720 6.38017 6.47690 6.72096 6.92708 7.42891 8.94308 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.007896 C = 0.005917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.150980 B = 3545.417207 C = 4730.752822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 C -0.171 4.171 4 N -0.529 5.529 5 C 0.206 3.794 6 C -0.520 4.520 7 H 0.056 0.944 8 C 0.002 3.998 9 N -0.927 5.927 10 Si 0.961 3.039 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.280 1.280 14 C 0.096 3.904 15 C -0.080 4.080 16 C -0.084 4.084 17 C -0.133 4.133 18 C -0.084 4.084 19 C -0.158 4.158 20 C -0.220 4.220 21 C -0.006 4.006 22 O -0.214 6.214 23 C 0.031 3.969 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.021 0.979 29 H 0.075 0.925 30 H 0.061 0.939 31 H -0.045 1.045 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.012 0.988 35 H 0.107 0.893 36 H 0.157 0.843 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.186 0.814 40 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 1.940 9.565 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.036 4.036 3 C -0.230 4.230 4 N -0.253 5.253 5 C 0.080 3.920 6 C -0.559 4.559 7 H 0.075 0.925 8 C -0.196 4.196 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.189 1.189 12 H -0.204 1.204 13 H -0.206 1.206 14 C -0.031 4.031 15 C -0.081 4.081 16 C -0.103 4.103 17 C -0.150 4.150 18 C -0.102 4.102 19 C -0.159 4.159 20 C -0.239 4.239 21 C -0.070 4.070 22 O -0.116 6.116 23 C -0.016 4.016 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.080 0.920 31 H -0.028 1.028 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.125 0.875 36 H 0.174 0.826 37 H 0.183 0.817 38 H 0.170 0.830 39 H 0.203 0.797 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -10.384 1.668 9.376 14.090 hybrid contribution 1.739 0.216 -0.771 1.915 sum -8.645 1.885 8.605 12.342 Atomic orbital electron populations 1.21772 0.92346 1.02127 1.02329 1.21720 0.96595 0.91942 0.93381 1.22340 0.99821 0.98302 1.02538 1.62340 1.16935 1.45002 1.01012 1.19488 0.82899 0.92981 0.96614 1.21519 0.92398 1.25466 1.16495 0.92544 1.25838 0.95994 0.98527 0.99211 1.70128 0.99410 1.45492 1.41735 0.85457 0.78293 0.78628 0.78998 1.18897 1.20361 1.20590 1.20980 1.01198 0.92531 0.88386 1.19080 0.89460 1.02242 0.97354 1.21106 0.96670 0.96070 0.96424 1.21383 0.98732 0.98875 0.96057 1.20851 0.89887 0.99019 1.00486 1.20398 0.95930 1.01796 0.97759 1.22781 0.90876 1.05716 1.04483 1.24583 0.96911 0.96647 0.88903 1.84163 1.16130 1.61217 1.50087 1.19945 0.84577 0.99459 0.97659 0.91603 0.90852 0.92616 0.92101 0.95950 0.90613 0.92034 1.02786 0.95740 0.93068 0.96947 0.87545 0.82571 0.81678 0.82959 0.79662 0.76004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.19 71.98 0.66 -3.00 16 2 C 0.07 2.81 2.77 44.92 0.12 2.93 16 3 C -0.17 -6.18 8.52 71.98 0.61 -5.56 16 4 N -0.53 -23.79 4.35 -880.03 -3.83 -27.62 16 5 C 0.21 11.57 4.37 85.56 0.37 11.95 16 6 C -0.52 -30.97 8.35 25.60 0.21 -30.76 16 7 H 0.06 3.32 7.19 -2.91 -0.02 3.30 16 8 C 0.00 0.13 5.46 84.65 0.46 0.59 16 9 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 10 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 11 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.10 3.72 3.72 85.56 0.32 4.03 16 15 C -0.08 -3.05 5.30 -19.80 -0.10 -3.15 16 16 C -0.08 -2.47 9.64 22.30 0.21 -2.26 16 17 C -0.13 -3.34 10.03 22.27 0.22 -3.12 16 18 C -0.08 -2.36 10.10 22.43 0.23 -2.14 16 19 C -0.16 -5.63 6.40 -20.21 -0.13 -5.76 16 20 C -0.22 -7.05 11.14 23.54 0.26 -6.78 16 21 C -0.01 -0.21 11.96 66.85 0.80 0.59 16 22 O -0.21 -9.77 8.70 -9.08 -0.08 -9.85 16 23 C 0.03 1.30 5.96 22.98 0.14 1.43 16 24 H 0.07 1.63 6.30 -2.39 -0.02 1.61 16 25 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 2.73 6.63 -2.39 -0.02 2.72 16 28 H 0.02 0.95 6.63 -2.39 -0.02 0.94 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 1.99 6.72 -2.39 -0.02 1.98 16 31 H -0.05 -2.82 6.47 -2.39 -0.02 -2.84 16 32 H 0.02 1.49 4.45 -2.39 -0.01 1.48 16 33 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 34 H 0.01 0.53 7.35 -2.39 -0.02 0.51 16 35 H 0.11 3.27 5.76 -2.39 -0.01 3.26 16 36 H 0.16 3.57 8.05 -2.91 -0.02 3.54 16 37 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 38 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 39 H 0.19 4.35 8.06 -2.91 -0.02 4.32 16 40 H 0.22 6.35 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -74.59 320.62 3.84 -70.76 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.03 Total: 16.78 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 4.40 Total: -41.00 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -3.54 Total: -84.86 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.08 Total: -9.85 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -74.59 3.84 -70.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562647309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.850 kcal (2) G-P(sol) polarization free energy of solvation -74.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds