Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.08999 * 109.47045 * 55.00093 * 3 2 1 5 5 C 1.50700 * 109.47346 * 175.00342 * 3 2 1 6 6 H 1.07996 * 120.00450 * 120.00010 * 5 3 2 7 7 C 1.37883 * 119.99496 * 300.00230 * 5 3 2 8 8 N 1.31506 * 120.00345 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99587 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47049 * 90.00046 * 9 7 5 11 11 H 1.48501 * 109.46931 * 209.99847 * 9 7 5 12 12 H 1.48506 * 109.47255 * 329.99709 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21553 * 119.99924 * 359.97438 * 14 13 3 16 16 C 1.47850 * 119.99831 * 180.27510 * 14 13 3 17 17 C 1.39595 * 120.14436 * 359.44000 * 16 14 13 18 18 C 1.37936 * 119.85235 * 179.79033 * 17 16 14 19 19 C 1.38384 * 120.14159 * 0.49480 * 18 17 16 20 20 C 1.38331 * 120.29531 * 359.73599 * 19 18 17 21 21 C 1.50701 * 119.92803 * 180.02562 * 20 19 18 22 22 C 1.52998 * 117.49924 * 8.64513 * 21 20 19 23 23 C 1.52995 * 60.00127 * 252.50937 * 22 21 20 24 24 C 1.37977 * 120.14465 * 0.03069 * 20 19 18 25 25 H 1.09001 * 109.46854 * 300.00196 * 1 2 3 26 26 H 1.08999 * 109.47118 * 59.99786 * 1 2 3 27 27 H 1.08995 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46790 * 240.00525 * 2 1 3 29 29 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 30 30 H 0.97002 * 120.00466 * 179.97438 * 8 7 5 31 31 H 0.97001 * 120.00074 * 264.99310 * 13 3 2 32 32 H 1.07998 * 120.07262 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.93043 * 180.23383 * 18 17 16 34 34 H 1.08009 * 119.85053 * 179.76391 * 19 18 17 35 35 H 1.09001 * 115.54971 * 154.35626 * 21 20 19 36 36 H 1.09001 * 117.50047 * 0.02562 * 22 21 20 37 37 H 1.09005 * 117.49771 * 145.02058 * 22 21 20 38 38 H 1.09002 * 117.50090 * 252.51300 * 23 22 21 39 39 H 1.09003 * 117.51994 * 107.48369 * 23 22 21 40 40 H 1.08007 * 120.07738 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1237 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3374 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1128 2.0835 11 1 6.4391 -0.3111 2.1544 12 1 6.6131 0.8394 0.0267 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3413 2.6319 -0.4321 16 6 0.0416 3.3202 -2.6322 17 6 0.9329 3.3640 -3.7057 18 6 0.5580 3.9735 -4.8849 19 6 -0.6948 4.5496 -5.0017 20 6 -1.5810 4.5139 -3.9401 21 6 -2.9434 5.1435 -4.0764 22 6 -3.3634 5.6243 -5.4668 23 6 -3.0020 6.6414 -4.3825 24 6 -1.2202 3.9032 -2.7566 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8294 -0.0611 2.9498 31 1 2.2718 2.1233 -1.9977 32 1 1.9124 2.9184 -3.6144 33 1 1.2452 4.0048 -5.7175 34 1 -0.9820 5.0290 -5.9259 35 1 -3.7186 4.7310 -3.4307 36 1 -2.6546 5.4849 -6.2830 37 1 -4.4153 5.5281 -5.7361 38 1 -3.8160 7.2143 -3.9384 39 1 -2.0552 7.1717 -4.4849 40 1 -1.9128 3.8762 -1.9283 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563390893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = -13.766192 kcal Electronic energy + Delta-G solvation = -20472.121939 eV Core-core repulsion = 17444.362702 eV Total energy + Delta-G solvation = -3027.759237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.28136 -39.92527 -37.52955 -36.90895 -34.38707 -33.09479 -31.96789 -31.38196 -28.91597 -25.58006 -24.96862 -23.98609 -23.16513 -22.44095 -21.58073 -20.72932 -19.07034 -18.04385 -17.40369 -16.95632 -16.59302 -16.27454 -16.25821 -15.67889 -15.04533 -14.91241 -14.61375 -14.58102 -14.10417 -13.68806 -13.39971 -13.21158 -13.09876 -12.89676 -12.79664 -12.69526 -12.21050 -12.14298 -12.08075 -11.94835 -11.63403 -11.56879 -11.30346 -11.07965 -10.76411 -10.53933 -9.96784 -9.66399 -9.50572 -8.17117 -6.35036 -0.08198 0.37227 1.44728 1.45211 1.56005 1.97622 2.33865 2.58623 2.79220 3.12112 3.18028 3.59674 3.82504 3.96937 3.98889 4.17019 4.18363 4.20963 4.39010 4.46004 4.53925 4.60368 4.72993 4.80987 4.91237 4.94172 5.04172 5.09830 5.15015 5.21981 5.28266 5.39777 5.42560 5.45014 5.52848 5.58278 5.60093 5.76532 5.89663 5.97148 6.14080 6.72015 6.93753 7.31073 7.51448 8.88523 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.003884 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.373333 B = 7207.037818 C = 7674.702834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.002 1.002 5 C -0.550 4.550 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.259 1.259 13 N -0.698 5.698 14 C 0.537 3.463 15 O -0.588 6.588 16 C -0.143 4.143 17 C -0.098 4.098 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.062 4.062 21 C -0.142 4.142 22 C -0.159 4.159 23 C -0.167 4.167 24 C -0.078 4.078 25 H 0.025 0.975 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 9.092 -18.594 22.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.588 4.588 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.183 1.183 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.471 6.471 16 C -0.146 4.146 17 C -0.117 4.117 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.062 4.062 21 C -0.160 4.160 22 C -0.195 4.195 23 C -0.203 4.203 24 C -0.098 4.098 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.342 8.949 -17.739 21.549 hybrid contribution 1.030 -0.305 0.803 1.341 sum -7.313 8.644 -16.937 20.373 Atomic orbital electron populations 1.21682 0.97160 0.99183 1.00108 1.21786 0.93610 0.99080 1.01444 1.18419 0.93872 0.89200 0.81077 0.98447 1.21566 0.91204 1.39162 1.06900 0.90966 1.25792 1.03498 0.94252 0.94923 1.70046 1.37171 1.38233 1.09840 0.85344 0.78866 0.77432 0.78688 1.20455 1.20882 1.18291 1.46204 1.15192 1.55531 1.17733 1.18847 0.82085 0.78515 0.87975 1.90698 1.52639 1.61662 1.42062 1.20022 0.96968 1.03439 0.94151 1.21567 0.99032 0.98344 0.92708 1.21446 0.97126 0.97114 0.97507 1.21574 0.93037 0.98034 0.98812 1.19272 0.95724 0.98152 0.93013 1.21041 0.94428 0.98135 1.02378 1.23196 1.03404 1.01795 0.91120 1.23112 1.03877 0.90354 1.02999 1.21035 0.94877 0.96006 0.97842 0.95547 0.94164 0.93374 0.93947 0.90720 0.92531 0.76199 0.84437 0.81881 0.82472 0.87373 0.87052 0.87091 0.87516 0.88487 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.51 71.98 0.61 -5.25 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.70 2.24 44.25 0.10 14.80 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -29.55 8.73 25.60 0.22 -29.33 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.91 -52.86 11.29 21.45 0.24 -52.62 16 9 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 13 N -0.70 -30.54 4.97 -448.98 -2.23 -32.77 16 14 C 0.54 23.38 6.34 86.79 0.55 23.93 16 15 O -0.59 -30.15 13.48 -3.88 -0.05 -30.20 16 16 C -0.14 -4.84 5.87 -20.09 -0.12 -4.96 16 17 C -0.10 -2.54 9.54 22.53 0.21 -2.32 16 18 C -0.11 -2.19 10.03 22.23 0.22 -1.96 16 19 C -0.10 -1.79 9.29 22.33 0.21 -1.58 16 20 C -0.06 -1.44 5.61 -19.90 -0.11 -1.55 16 21 C -0.14 -2.63 6.04 -11.54 -0.07 -2.70 16 22 C -0.16 -1.94 9.86 30.59 0.30 -1.64 16 23 C -0.17 -2.40 10.16 30.59 0.31 -2.09 16 24 C -0.08 -2.46 9.28 22.53 0.21 -2.25 16 25 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 26 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 27 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.07 4.20 5.95 -2.39 -0.01 4.18 16 30 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.40 14.90 6.57 -92.71 -0.61 14.29 16 32 H 0.14 3.19 6.41 -2.91 -0.02 3.18 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.16 1.83 6.00 -2.91 -0.02 1.81 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.11 1.07 6.17 -2.39 -0.01 1.05 16 37 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 3.90 7.65 -2.91 -0.02 3.87 16 Total: -1.00 -68.78 325.63 3.69 -65.09 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.44 Total: 27.81 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: 3.27 Total: -21.58 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -1.99 Total: -85.39 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -68.78 3.69 -65.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563390893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.323 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds