Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21553 * 119.99867 * 359.97438 * 14 13 3 16 16 C 1.47845 * 120.00337 * 179.97438 * 14 13 3 17 17 C 1.39594 * 120.14302 * 359.71894 * 16 14 13 18 18 C 1.37934 * 119.85596 * 179.79240 * 17 16 14 19 19 C 1.38390 * 120.14158 * 0.48323 * 18 17 16 20 20 C 1.38335 * 120.29131 * 359.74825 * 19 18 17 21 21 C 1.50694 * 119.92876 * 179.97438 * 20 19 18 22 22 C 1.53007 * 117.49842 * 8.64172 * 21 20 19 23 23 C 1.52998 * 60.00020 * 252.50869 * 22 21 20 24 24 C 1.37979 * 120.14681 * 0.02562 * 20 19 18 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.08009 * 120.07742 * 359.97438 * 17 16 14 33 33 H 1.08005 * 119.93109 * 180.22864 * 18 17 16 34 34 H 1.07995 * 119.85024 * 179.76612 * 19 18 17 35 35 H 1.08998 * 115.55304 * 154.34436 * 21 20 19 36 36 H 1.09000 * 117.49699 * 359.97438 * 22 21 20 37 37 H 1.08995 * 117.50224 * 145.01778 * 22 21 20 38 38 H 1.08996 * 117.49892 * 252.50638 * 23 22 21 39 39 H 1.09003 * 117.51457 * 107.47981 * 23 22 21 40 40 H 1.07994 * 120.07471 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3410 2.6325 0.4322 16 6 0.0439 3.3248 2.6305 17 6 0.9307 3.3580 3.7081 18 6 0.5612 3.9796 4.8826 19 6 -0.6895 4.5608 4.9976 20 6 -1.5749 4.5272 3.9352 21 6 -2.9349 5.1622 4.0696 22 6 -3.2031 5.9995 5.3218 23 6 -3.8597 4.6265 5.1645 24 6 -1.2159 3.9127 2.7532 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 1.9053 2.9006 3.6213 33 1 1.2477 4.0092 5.7158 34 1 -0.9754 5.0429 5.9207 35 1 -3.3954 5.4890 3.1372 36 1 -2.3959 6.0906 6.0487 37 1 -3.8400 6.8773 5.2135 38 1 -4.9285 4.6011 4.9526 39 1 -3.4844 3.8145 5.7874 40 1 -1.9078 3.8875 1.9244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563390894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 2.898551 kcal Electronic energy + Delta-G solvation = -20475.481597 eV Core-core repulsion = 17448.444997 eV Total energy + Delta-G solvation = -3027.036599 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00136 -38.59624 -36.60570 -35.03551 -32.50236 -31.35804 -30.90400 -30.06774 -26.96529 -24.30997 -23.49358 -22.72458 -22.32493 -21.30532 -19.83293 -19.16345 -17.70903 -16.55318 -15.99154 -15.49820 -15.31512 -14.92985 -14.54157 -14.30880 -14.00467 -13.68265 -13.21595 -12.86059 -12.67955 -12.26133 -11.94485 -11.92905 -11.51021 -11.43184 -11.25010 -11.03283 -10.95059 -10.84662 -10.76190 -10.59328 -10.30538 -10.17084 -9.62401 -9.08459 -9.02418 -8.82923 -8.58067 -8.49950 -7.81188 -6.12476 -4.21846 1.04882 1.38209 3.22764 3.23771 3.31529 3.34098 3.75236 4.03920 4.22776 4.35667 4.45812 4.68017 4.78025 4.86262 4.98984 5.05815 5.18945 5.34310 5.40137 5.43063 5.59617 5.66907 5.85479 5.86229 5.93516 6.06414 6.40949 6.43502 6.47993 6.49784 6.56261 6.68265 6.93996 7.06448 7.21610 7.37577 7.45116 7.62640 7.74136 7.90611 8.18300 8.66232 8.77678 9.12124 9.45471 10.92891 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032387 B = 0.003891 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.330431 B = 7194.455210 C = 7725.074640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.541 3.459 15 O -0.545 6.545 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.125 4.125 19 C -0.108 4.108 20 C -0.065 4.065 21 C -0.114 4.114 22 C -0.178 4.178 23 C -0.170 4.170 24 C -0.059 4.059 25 H 0.023 0.977 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 7.573 15.206 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.326 3.674 15 O -0.425 6.425 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.143 4.143 19 C -0.126 4.126 20 C -0.065 4.065 21 C -0.132 4.132 22 C -0.215 4.215 23 C -0.207 4.207 24 C -0.078 4.078 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.221 0.779 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.291 7.422 14.312 18.607 hybrid contribution 1.360 -0.069 0.253 1.385 sum -7.932 7.353 14.565 18.141 Atomic orbital electron populations 1.21844 0.98336 0.98069 1.01275 1.21937 0.92651 0.99727 1.02324 1.18826 0.94277 0.89229 0.80885 0.93165 1.21269 0.90664 1.38846 1.06470 0.92043 1.24888 0.98631 0.94787 0.95379 1.69908 1.35021 1.37546 1.09413 0.86400 0.84850 0.77765 0.78125 1.19742 1.20873 1.20871 1.46461 1.14368 1.55447 1.18578 1.18168 0.83009 0.79360 0.86847 1.90733 1.51551 1.60177 1.40002 1.20332 0.95363 1.01119 0.95122 1.21409 0.99216 0.97953 0.92653 1.21029 0.96544 0.98901 0.97779 1.21129 0.93774 0.99376 0.98365 1.19043 0.94333 0.99088 0.94000 1.21020 0.94081 1.03468 0.94680 1.23064 1.03534 0.94869 1.00021 1.23027 0.98484 0.97392 1.01794 1.21063 0.95269 0.94415 0.97052 0.95825 0.94278 0.93111 0.88194 0.95029 0.92608 0.77922 0.85405 0.85669 0.85996 0.86764 0.88402 0.88490 0.88466 0.88574 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.83 2.24 -69.09 -0.16 6.68 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.68 11.28 55.43 0.63 -24.06 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.70 -14.86 4.97 -55.88 -0.28 -15.13 16 14 C 0.54 11.21 6.34 -12.33 -0.08 11.13 16 15 O -0.54 -13.02 13.48 5.32 0.07 -12.94 16 16 C -0.12 -1.94 5.87 -104.97 -0.62 -2.55 16 17 C -0.09 -1.29 9.54 -39.19 -0.37 -1.67 16 18 C -0.12 -1.43 10.03 -39.64 -0.40 -1.83 16 19 C -0.11 -1.21 9.29 -39.49 -0.37 -1.57 16 20 C -0.06 -0.80 5.61 -104.68 -0.59 -1.39 16 21 C -0.11 -1.16 6.04 -91.77 -0.55 -1.71 16 22 C -0.18 -1.42 9.86 -26.73 -0.26 -1.68 16 23 C -0.17 -1.44 10.16 -26.73 -0.27 -1.71 16 24 C -0.06 -0.90 9.28 -39.18 -0.36 -1.26 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 28 H 0.10 2.70 5.94 -51.93 -0.31 2.39 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 7.15 6.57 -40.82 -0.27 6.88 16 32 H 0.13 1.60 6.41 -52.48 -0.34 1.27 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.12 1.06 6.00 -52.49 -0.32 0.74 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 0.72 6.17 -51.93 -0.32 0.40 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.13 2.11 7.65 -52.49 -0.40 1.70 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -30.05 325.61 -9.49 -39.55 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.54 Total: 8.54 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -4.25 Total: -16.41 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.35 Total: -39.19 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.05 -9.49 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563390894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.444 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds