Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21553 * 119.99867 * 359.97438 * 14 13 3 16 16 C 1.47845 * 120.00337 * 179.97438 * 14 13 3 17 17 C 1.39594 * 120.14302 * 359.71894 * 16 14 13 18 18 C 1.37934 * 119.85596 * 179.79240 * 17 16 14 19 19 C 1.38390 * 120.14158 * 0.48323 * 18 17 16 20 20 C 1.38335 * 120.29131 * 359.74825 * 19 18 17 21 21 C 1.50694 * 119.92876 * 179.97438 * 20 19 18 22 22 C 1.53007 * 117.49842 * 8.64172 * 21 20 19 23 23 C 1.52998 * 60.00020 * 252.50869 * 22 21 20 24 24 C 1.37979 * 120.14681 * 0.02562 * 20 19 18 25 25 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 27 27 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 28 28 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 29 29 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 30 30 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 32 32 H 1.08009 * 120.07742 * 359.97438 * 17 16 14 33 33 H 1.08005 * 119.93109 * 180.22864 * 18 17 16 34 34 H 1.07995 * 119.85024 * 179.76612 * 19 18 17 35 35 H 1.08998 * 115.55304 * 154.34436 * 21 20 19 36 36 H 1.09000 * 117.49699 * 359.97438 * 22 21 20 37 37 H 1.08995 * 117.50224 * 145.01778 * 22 21 20 38 38 H 1.08996 * 117.49892 * 252.50638 * 23 22 21 39 39 H 1.09003 * 117.51457 * 107.47981 * 23 22 21 40 40 H 1.07994 * 120.07471 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5992 1.5345 -0.1881 11 1 6.4924 -0.5321 -1.4518 12 1 6.4050 1.5996 -2.6046 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3410 2.6325 0.4322 16 6 0.0439 3.3248 2.6305 17 6 0.9307 3.3580 3.7081 18 6 0.5612 3.9796 4.8826 19 6 -0.6895 4.5608 4.9976 20 6 -1.5749 4.5272 3.9352 21 6 -2.9349 5.1622 4.0696 22 6 -3.2031 5.9995 5.3218 23 6 -3.8597 4.6265 5.1645 24 6 -1.2159 3.9127 2.7532 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8295 -0.0694 -2.9455 31 1 2.2720 2.1230 1.9978 32 1 1.9053 2.9006 3.6213 33 1 1.2477 4.0092 5.7158 34 1 -0.9754 5.0429 5.9207 35 1 -3.3954 5.4890 3.1372 36 1 -2.3959 6.0906 6.0487 37 1 -3.8400 6.8773 5.2135 38 1 -4.9285 4.6011 4.9526 39 1 -3.4844 3.8145 5.7874 40 1 -1.9078 3.8875 1.9244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563390894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -13.765341 kcal Electronic energy + Delta-G solvation = -20476.204197 eV Core-core repulsion = 17448.444997 eV Total energy + Delta-G solvation = -3027.759200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28121 -39.92514 -37.52915 -36.91030 -34.38712 -33.09350 -31.96773 -31.38204 -28.91676 -25.58110 -24.96942 -23.98624 -23.16403 -22.44077 -21.58162 -20.72909 -19.07058 -18.04678 -17.40622 -16.95899 -16.57280 -16.29034 -16.25646 -15.68697 -15.06968 -14.85869 -14.61396 -14.57810 -14.16222 -13.65167 -13.40445 -13.21828 -13.09864 -12.88943 -12.79962 -12.70600 -12.19759 -12.14771 -12.08011 -11.94708 -11.63308 -11.57363 -11.30176 -11.06477 -10.76650 -10.54471 -9.96796 -9.66331 -9.50551 -8.17330 -6.35084 -0.08207 0.37241 1.43956 1.44876 1.56992 1.97622 2.33801 2.58673 2.79091 3.12133 3.17963 3.59637 3.82502 3.96948 3.98873 4.17021 4.18483 4.21036 4.39085 4.45984 4.53776 4.60362 4.72966 4.81044 4.91290 4.94206 5.04138 5.09868 5.15046 5.21947 5.28386 5.39745 5.42564 5.45022 5.52845 5.58383 5.60171 5.76503 5.89609 5.97137 6.14196 6.72178 6.93720 7.31042 7.51427 8.88473 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032387 B = 0.003891 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.330431 B = 7194.455210 C = 7725.074640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.698 5.698 14 C 0.537 3.463 15 O -0.588 6.588 16 C -0.143 4.143 17 C -0.098 4.098 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.061 4.061 21 C -0.142 4.142 22 C -0.159 4.159 23 C -0.166 4.166 24 C -0.078 4.078 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 8.551 18.809 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.016 0.984 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.471 6.471 16 C -0.146 4.146 17 C -0.117 4.117 18 C -0.132 4.132 19 C -0.115 4.115 20 C -0.062 4.062 21 C -0.160 4.160 22 C -0.196 4.196 23 C -0.202 4.202 24 C -0.098 4.098 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.238 0.762 32 H 0.156 0.844 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.585 8.411 17.957 21.608 hybrid contribution 1.038 -0.303 -0.811 1.352 sum -7.547 8.108 17.146 20.413 Atomic orbital electron populations 1.21680 0.97159 0.99179 1.00105 1.21789 0.93613 0.99087 1.01461 1.18424 0.93890 0.89199 0.81086 0.98427 1.21595 0.91187 1.38936 1.06996 0.90976 1.25795 1.03500 0.94272 0.94931 1.70059 1.37071 1.38209 1.09956 0.85289 0.78873 0.77881 0.78238 1.18357 1.20334 1.21020 1.46202 1.15161 1.55572 1.17722 1.18845 0.82081 0.78519 0.87972 1.90698 1.52631 1.61717 1.42014 1.20021 0.97016 1.03417 0.94127 1.21568 0.99071 0.98351 0.92666 1.21448 0.97176 0.96990 0.97580 1.21574 0.93043 0.97928 0.98910 1.19271 0.95727 0.98020 0.93136 1.21040 0.93508 1.05715 0.95748 1.23198 1.03546 0.94911 0.97926 1.23112 0.98755 0.98018 1.00358 1.21033 0.94744 0.95928 0.98055 0.93380 0.94181 0.95536 0.90693 0.93959 0.92543 0.76200 0.84437 0.81880 0.82473 0.87413 0.87062 0.87121 0.87503 0.88427 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.51 71.98 0.61 -5.24 16 2 C -0.12 -6.13 5.45 30.59 0.17 -5.96 16 3 C 0.28 14.68 2.24 44.25 0.10 14.78 16 4 H 0.00 -0.14 7.58 -2.38 -0.02 -0.15 16 5 C -0.55 -29.49 8.73 25.60 0.22 -29.26 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.91 -52.82 11.28 21.45 0.24 -52.58 16 9 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 13 N -0.70 -30.53 4.97 -448.98 -2.23 -32.77 16 14 C 0.54 23.38 6.34 86.79 0.55 23.93 16 15 O -0.59 -30.14 13.48 -3.88 -0.05 -30.19 16 16 C -0.14 -4.84 5.87 -20.09 -0.12 -4.96 16 17 C -0.10 -2.54 9.54 22.53 0.21 -2.33 16 18 C -0.11 -2.19 10.03 22.23 0.22 -1.97 16 19 C -0.10 -1.79 9.29 22.33 0.21 -1.58 16 20 C -0.06 -1.44 5.61 -19.90 -0.11 -1.55 16 21 C -0.14 -2.64 6.04 -11.54 -0.07 -2.71 16 22 C -0.16 -1.96 9.86 30.60 0.30 -1.66 16 23 C -0.17 -2.36 10.16 30.59 0.31 -2.05 16 24 C -0.08 -2.46 9.28 22.53 0.21 -2.25 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.86 5.65 -2.38 -0.01 1.84 16 27 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 28 H 0.07 4.21 5.94 -2.38 -0.01 4.20 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.27 14.45 8.31 -92.70 -0.77 13.68 16 31 H 0.40 14.90 6.57 -92.71 -0.61 14.29 16 32 H 0.14 3.20 6.41 -2.91 -0.02 3.18 16 33 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 34 H 0.16 1.83 6.00 -2.91 -0.02 1.81 16 35 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 1.07 6.17 -2.39 -0.01 1.06 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 3.90 7.65 -2.91 -0.02 3.87 16 Total: -1.00 -68.79 325.61 3.69 -65.09 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.44 Total: 27.70 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 3.27 Total: -21.55 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.99 Total: -85.34 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.05 Total: -30.19 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -68.79 3.69 -65.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563390894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.328 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds