Wall clock time and date at job start Mon Mar 30 2020 02:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 N 1.46895 * 109.47496 * 119.99878 * 2 1 3 5 5 C 1.46902 * 111.00058 * 293.69548 * 4 2 1 6 6 C 1.50701 * 109.47029 * 160.11114 * 5 4 2 7 7 H 1.08002 * 119.99963 * 4.61471 * 6 5 4 8 8 C 1.37876 * 119.99590 * 184.62246 * 6 5 4 9 9 N 1.31516 * 120.00254 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99883 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47099 * 59.99423 * 10 8 6 12 12 H 1.48498 * 109.47271 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47156 * 299.99910 * 10 8 6 14 14 C 1.46893 * 111.00395 * 169.73613 * 4 2 1 15 15 C 1.50706 * 109.47190 * 293.95619 * 14 4 2 16 16 C 1.38744 * 119.78726 * 89.99695 * 15 14 4 17 17 C 1.37856 * 120.68384 * 180.02562 * 16 15 14 18 18 C 1.38941 * 119.81208 * 359.97438 * 17 16 15 19 19 O 1.34814 * 133.48853 * 180.02562 * 18 17 16 20 20 C 1.34449 * 110.88763 * 179.97438 * 19 18 17 21 21 C 1.34003 * 110.15241 * 359.97438 * 20 19 18 22 22 C 1.40480 * 119.22906 * 359.97438 * 18 17 16 23 23 C 1.36726 * 119.79293 * 270.01838 * 15 14 4 24 24 H 1.09002 * 109.47223 * 301.05854 * 1 2 3 25 25 H 1.08999 * 109.47235 * 61.05973 * 1 2 3 26 26 H 1.09002 * 109.47152 * 181.06305 * 1 2 3 27 27 H 1.09004 * 109.46797 * 240.00212 * 2 1 3 28 28 H 1.08995 * 109.46755 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47103 * 300.00178 * 3 2 1 30 30 H 1.09003 * 109.46893 * 59.99980 * 3 2 1 31 31 H 1.08995 * 109.46607 * 280.10648 * 5 4 2 32 32 H 1.08997 * 109.47173 * 40.10569 * 5 4 2 33 33 H 0.97001 * 119.99728 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47523 * 173.95931 * 14 4 2 35 35 H 1.09007 * 109.47115 * 53.95429 * 14 4 2 36 36 H 1.07997 * 119.66469 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.08927 * 179.97438 * 17 16 15 38 38 H 1.08003 * 124.92578 * 179.97438 * 20 19 18 39 39 H 1.08001 * 126.90418 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.14485 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.6756 0.0551 2.4163 6 6 1.7380 -0.8669 3.6067 7 1 2.0781 -1.8846 3.4842 8 6 1.3606 -0.4111 4.8520 9 7 0.9468 0.8283 5.0011 10 14 1.4371 -1.5542 6.3276 11 1 2.8346 -2.0172 6.5231 12 1 0.9825 -0.8279 7.5404 13 1 0.5559 -2.7260 6.0922 14 6 3.4674 -0.9273 1.1175 15 6 3.7567 -1.8968 0.0005 16 6 3.9945 -1.4210 -1.2809 17 6 4.2604 -2.2913 -2.3164 18 6 4.2920 -3.6597 -2.0778 19 8 4.5182 -4.7332 -2.8613 20 6 4.4385 -5.8713 -2.1500 21 6 4.1573 -5.5962 -0.8689 22 6 4.0514 -4.1351 -0.7779 23 6 3.7827 -3.2397 0.2563 24 1 -0.3634 0.5302 0.8803 25 1 -0.3634 0.4973 -0.8993 26 1 -0.3633 -1.0275 0.0191 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.3833 0.8728 2.5526 32 1 0.6676 0.4590 2.3218 33 1 0.6817 1.1490 5.8774 34 1 3.8220 -1.3433 2.0605 35 1 3.9780 0.0157 0.9214 36 1 3.9702 -0.3579 -1.4694 37 1 4.4437 -1.9105 -3.3102 38 1 4.5806 -6.8633 -2.5525 39 1 4.0336 -6.3069 -0.0651 40 1 3.5971 -3.6052 1.2555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571364460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:15 Heat of formation + Delta-G solvation = 30.431155 kcal Electronic energy + Delta-G solvation = -20943.350268 eV Core-core repulsion = 17917.507572 eV Total energy + Delta-G solvation = -3025.842696 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.28338 -38.76265 -36.83868 -32.79845 -32.64043 -31.90201 -29.91267 -29.23677 -27.02764 -26.46541 -24.66631 -22.87299 -22.32149 -21.18507 -21.15681 -18.53231 -17.32187 -16.94131 -16.53806 -15.97572 -15.17802 -14.87652 -14.40917 -14.21857 -13.93971 -13.74856 -13.24609 -13.02967 -12.78584 -12.60562 -12.26435 -12.01987 -11.88868 -11.51204 -11.34043 -11.06088 -10.94790 -10.75764 -10.62536 -10.50258 -10.38532 -10.23229 -10.07673 -9.52826 -9.22494 -8.39418 -8.26364 -8.05786 -7.17141 -5.99793 -4.00469 1.08781 1.56843 2.46072 2.88327 3.34512 3.38790 3.41662 3.89591 4.44927 4.56011 4.80833 5.01208 5.15131 5.18021 5.36096 5.37165 5.51731 5.54766 5.61203 5.70728 5.74353 5.91531 5.97184 6.06103 6.15836 6.28710 6.34344 6.38932 6.43850 6.46473 6.53553 6.55433 6.79397 6.84627 6.87170 6.96832 7.29182 7.31232 7.39259 7.84964 8.16248 8.25083 8.59420 9.06663 9.63280 11.10552 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.005201 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.353597 B = 5381.812892 C = 6482.217054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 C -0.185 4.185 4 N -0.522 5.522 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.097 3.903 15 C -0.076 4.076 16 C -0.085 4.085 17 C -0.115 4.115 18 C 0.041 3.959 19 O -0.201 6.201 20 C -0.007 4.007 21 C -0.205 4.205 22 C -0.134 4.134 23 C -0.049 4.049 24 H 0.062 0.938 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.065 0.935 31 H -0.009 1.009 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.203 0.797 39 H 0.155 0.845 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -7.232 -13.996 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 C -0.244 4.244 4 N -0.246 5.246 5 C 0.066 3.934 6 C -0.543 4.543 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.031 4.031 15 C -0.077 4.077 16 C -0.103 4.103 17 C -0.133 4.133 18 C -0.006 4.006 19 O -0.103 6.103 20 C -0.071 4.071 21 C -0.224 4.224 22 C -0.135 4.135 23 C -0.068 4.068 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.009 0.991 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.220 0.780 39 H 0.173 0.827 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.902 -7.523 -14.086 17.024 hybrid contribution 0.325 0.090 1.004 1.059 sum 6.227 -7.433 -13.082 16.284 Atomic orbital electron populations 1.21801 0.95032 1.01961 1.00896 1.21712 0.95644 0.91807 0.94691 1.22488 1.00754 0.99126 1.02002 1.62376 1.10646 1.48782 1.02830 1.19794 0.96343 0.92145 0.85108 1.21153 1.43178 0.98223 0.91711 0.92106 1.24960 0.95534 0.95129 0.98904 1.69941 1.44984 1.15345 1.23697 0.86612 0.78384 0.80812 0.81890 1.20355 1.21434 1.20244 1.20985 0.90611 0.95262 0.96198 1.19681 0.98655 0.94373 0.94975 1.20910 0.98437 0.99236 0.91763 1.19801 1.05841 0.87455 1.00208 1.19605 1.03360 0.88602 0.89011 1.83957 1.74797 1.13352 1.38195 1.23840 1.02949 0.89245 0.91092 1.22543 1.08217 0.94035 0.97610 1.19966 1.05863 0.93385 0.94263 1.20228 0.96635 0.91602 0.98293 0.91889 0.93714 0.92431 0.91168 0.93279 0.93361 0.91625 0.99128 0.94239 0.92959 0.89217 0.94800 0.85175 0.85562 0.78001 0.82700 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.15 37.16 0.34 -2.10 16 2 C 0.07 1.25 2.70 -67.71 -0.18 1.07 16 3 C -0.18 -3.06 8.53 37.16 0.32 -2.74 16 4 N -0.52 -10.86 4.36 -229.52 -1.00 -11.86 16 5 C 0.19 4.77 3.33 -4.97 -0.02 4.75 16 6 C -0.50 -13.84 8.62 -34.44 -0.30 -14.14 16 7 H 0.06 1.66 7.67 -52.49 -0.40 1.25 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16 10 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.10 1.81 4.81 -4.98 -0.02 1.79 16 15 C -0.08 -1.25 4.88 -104.98 -0.51 -1.76 16 16 C -0.08 -1.21 7.81 -39.53 -0.31 -1.52 16 17 C -0.11 -1.56 10.07 -39.46 -0.40 -1.96 16 18 C 0.04 0.61 7.42 -38.48 -0.29 0.33 16 19 O -0.20 -2.72 10.58 3.89 0.04 -2.68 16 20 C -0.01 -0.07 11.96 29.24 0.35 0.28 16 21 C -0.20 -2.54 11.14 -37.62 -0.42 -2.96 16 22 C -0.13 -2.05 6.40 -105.16 -0.67 -2.72 16 23 C -0.05 -0.80 9.68 -39.69 -0.38 -1.19 16 24 H 0.06 1.22 6.30 -51.93 -0.33 0.90 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 1.17 5.45 -51.93 -0.28 0.88 16 28 H 0.05 0.77 6.59 -51.93 -0.34 0.43 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.24 6.76 -51.93 -0.35 0.89 16 31 H -0.01 -0.24 7.33 -51.93 -0.38 -0.62 16 32 H 0.04 1.06 5.88 -51.93 -0.31 0.76 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.09 1.81 7.28 -51.93 -0.38 1.44 16 35 H 0.03 0.61 6.35 -51.92 -0.33 0.28 16 36 H 0.13 1.65 7.85 -52.49 -0.41 1.23 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -30.41 323.46 -8.57 -38.97 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.61 Total: 1.24 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.59 Total: -21.41 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.26 Total: -37.48 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.41 -8.57 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571364460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.403 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds