Wall clock time and date at job start Mon Mar 30 2020 02:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47000 * 2 1 4 4 N 1.46895 * 109.47496 * 119.99878 * 2 1 3 5 5 C 1.46902 * 111.00058 * 293.69548 * 4 2 1 6 6 C 1.50701 * 109.47029 * 160.11114 * 5 4 2 7 7 H 1.08002 * 119.99963 * 4.61471 * 6 5 4 8 8 C 1.37876 * 119.99590 * 184.62246 * 6 5 4 9 9 N 1.31516 * 120.00254 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99883 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47099 * 59.99423 * 10 8 6 12 12 H 1.48498 * 109.47271 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47156 * 299.99910 * 10 8 6 14 14 C 1.46893 * 111.00395 * 169.73613 * 4 2 1 15 15 C 1.50706 * 109.47190 * 293.95619 * 14 4 2 16 16 C 1.38744 * 119.78726 * 89.99695 * 15 14 4 17 17 C 1.37856 * 120.68384 * 180.02562 * 16 15 14 18 18 C 1.38941 * 119.81208 * 359.97438 * 17 16 15 19 19 O 1.34814 * 133.48853 * 180.02562 * 18 17 16 20 20 C 1.34449 * 110.88763 * 179.97438 * 19 18 17 21 21 C 1.34003 * 110.15241 * 359.97438 * 20 19 18 22 22 C 1.40480 * 119.22906 * 359.97438 * 18 17 16 23 23 C 1.36726 * 119.79293 * 270.01838 * 15 14 4 24 24 H 1.09002 * 109.47223 * 301.05854 * 1 2 3 25 25 H 1.08999 * 109.47235 * 61.05973 * 1 2 3 26 26 H 1.09002 * 109.47152 * 181.06305 * 1 2 3 27 27 H 1.09004 * 109.46797 * 240.00212 * 2 1 3 28 28 H 1.08995 * 109.46755 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47103 * 300.00178 * 3 2 1 30 30 H 1.09003 * 109.46893 * 59.99980 * 3 2 1 31 31 H 1.08995 * 109.46607 * 280.10648 * 5 4 2 32 32 H 1.08997 * 109.47173 * 40.10569 * 5 4 2 33 33 H 0.97001 * 119.99728 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47523 * 173.95931 * 14 4 2 35 35 H 1.09007 * 109.47115 * 53.95429 * 14 4 2 36 36 H 1.07997 * 119.66469 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.08927 * 179.97438 * 17 16 15 38 38 H 1.08003 * 124.92578 * 179.97438 * 20 19 18 39 39 H 1.08001 * 126.90418 * 180.02562 * 21 20 19 40 40 H 1.08002 * 120.14485 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.6756 0.0551 2.4163 6 6 1.7380 -0.8669 3.6067 7 1 2.0781 -1.8846 3.4842 8 6 1.3606 -0.4111 4.8520 9 7 0.9468 0.8283 5.0011 10 14 1.4371 -1.5542 6.3276 11 1 2.8346 -2.0172 6.5231 12 1 0.9825 -0.8279 7.5404 13 1 0.5559 -2.7260 6.0922 14 6 3.4674 -0.9273 1.1175 15 6 3.7567 -1.8968 0.0005 16 6 3.9945 -1.4210 -1.2809 17 6 4.2604 -2.2913 -2.3164 18 6 4.2920 -3.6597 -2.0778 19 8 4.5182 -4.7332 -2.8613 20 6 4.4385 -5.8713 -2.1500 21 6 4.1573 -5.5962 -0.8689 22 6 4.0514 -4.1351 -0.7779 23 6 3.7827 -3.2397 0.2563 24 1 -0.3634 0.5302 0.8803 25 1 -0.3634 0.4973 -0.8993 26 1 -0.3633 -1.0275 0.0191 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.3833 0.8728 2.5526 32 1 0.6676 0.4590 2.3218 33 1 0.6817 1.1490 5.8774 34 1 3.8220 -1.3433 2.0605 35 1 3.9780 0.0157 0.9214 36 1 3.9702 -0.3579 -1.4694 37 1 4.4437 -1.9105 -3.3102 38 1 4.5806 -6.8633 -2.5525 39 1 4.0336 -6.3069 -0.0651 40 1 3.5971 -3.6052 1.2555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571364460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:14 Heat of formation + Delta-G solvation = 12.839602 kcal Electronic energy + Delta-G solvation = -20944.113095 eV Core-core repulsion = 17917.507572 eV Total energy + Delta-G solvation = -3026.605523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.30037 -40.14172 -38.19914 -34.85601 -33.68360 -33.27265 -31.46978 -30.29703 -28.73326 -27.95873 -26.23352 -24.23060 -23.92274 -22.36223 -22.18287 -20.10819 -18.64615 -18.32626 -17.92671 -17.01795 -16.73286 -16.61167 -16.00780 -15.62826 -15.15220 -15.05588 -14.73271 -14.31199 -14.04881 -13.91064 -13.80033 -13.52214 -13.25258 -12.94102 -12.82973 -12.80869 -12.60403 -12.33077 -12.11617 -12.09969 -12.01011 -11.78234 -11.26838 -11.25315 -11.04792 -10.54406 -9.45123 -9.10827 -8.86051 -8.15474 -6.24414 0.03782 0.38638 1.40613 1.43067 1.50647 1.50909 1.93256 2.41788 2.70931 3.15806 3.49529 3.58379 3.79764 3.92979 4.08879 4.17267 4.28006 4.36238 4.38952 4.48065 4.55923 4.68333 4.72068 4.80162 4.84248 4.93068 4.99305 5.03439 5.08243 5.18957 5.26747 5.32152 5.38077 5.42195 5.48065 5.53708 5.68968 5.71667 5.75827 6.15301 6.24787 6.47420 6.74473 6.91280 7.44358 8.94011 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018412 B = 0.005201 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.353597 B = 5381.812892 C = 6482.217054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.068 3.932 3 C -0.177 4.177 4 N -0.533 5.533 5 C 0.211 3.789 6 C -0.520 4.520 7 H 0.056 0.944 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.104 3.896 15 C -0.085 4.085 16 C -0.089 4.089 17 C -0.103 4.103 18 C 0.025 3.975 19 O -0.206 6.206 20 C 0.017 3.983 21 C -0.232 4.232 22 C -0.151 4.151 23 C -0.070 4.070 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.033 0.967 31 H -0.035 1.035 32 H 0.016 0.984 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.254 0.746 39 H 0.172 0.828 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 -8.778 -16.208 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.041 4.041 3 C -0.235 4.235 4 N -0.256 5.256 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.197 1.197 14 C -0.023 4.023 15 C -0.086 4.086 16 C -0.108 4.108 17 C -0.121 4.121 18 C -0.022 4.022 19 O -0.107 6.107 20 C -0.047 4.047 21 C -0.250 4.250 22 C -0.152 4.152 23 C -0.089 4.089 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.052 0.948 31 H -0.017 1.017 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.167 0.833 37 H 0.175 0.825 38 H 0.269 0.731 39 H 0.189 0.811 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.618 -9.077 -16.317 19.810 hybrid contribution 0.134 0.490 1.590 1.669 sum 6.752 -8.588 -14.727 18.336 Atomic orbital electron populations 1.21779 0.94923 1.01400 1.01215 1.21848 0.95780 0.92596 0.93828 1.22388 1.01120 0.98063 1.01950 1.62266 1.12294 1.48571 1.02515 1.19364 0.94259 0.91175 0.86667 1.21487 1.42962 0.98352 0.93028 0.92578 1.25801 0.95083 0.96615 1.01836 1.70066 1.45855 1.17059 1.24422 0.85564 0.78743 0.78805 0.78261 1.19454 1.20852 1.19655 1.20838 0.89234 0.96045 0.96218 1.19475 1.00161 0.93766 0.95189 1.21017 0.98564 1.00368 0.90807 1.20125 1.03830 0.86942 1.01243 1.19889 1.03783 0.89550 0.88996 1.83982 1.74599 1.13754 1.38413 1.24788 0.99610 0.90016 0.90312 1.22852 1.10003 0.92931 0.99257 1.20276 1.05629 0.95016 0.94269 1.20189 0.98298 0.92169 0.98275 0.94719 0.90279 0.93274 0.89066 0.92599 0.90179 0.94785 1.01731 0.96611 0.92850 0.91913 0.94241 0.83313 0.82470 0.73058 0.81078 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.15 71.98 0.66 -4.06 16 2 C 0.07 2.38 2.70 44.92 0.12 2.50 16 3 C -0.18 -5.73 8.53 71.98 0.61 -5.11 16 4 N -0.53 -22.85 4.36 -880.07 -3.84 -26.69 16 5 C 0.21 11.12 3.33 85.56 0.29 11.40 16 6 C -0.52 -29.70 8.62 25.60 0.22 -29.48 16 7 H 0.06 3.18 7.67 -2.91 -0.02 3.16 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 10 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.10 4.02 4.81 85.56 0.41 4.43 16 15 C -0.09 -2.81 4.88 -20.10 -0.10 -2.90 16 16 C -0.09 -2.39 7.81 22.30 0.17 -2.22 16 17 C -0.10 -2.53 10.07 22.35 0.23 -2.31 16 18 C 0.02 0.69 7.42 22.98 0.17 0.86 16 19 O -0.21 -4.93 10.58 -8.98 -0.10 -5.03 16 20 C 0.02 0.30 11.96 66.85 0.80 1.10 16 21 C -0.23 -5.31 11.14 23.54 0.26 -5.05 16 22 C -0.15 -4.51 6.40 -20.22 -0.13 -4.64 16 23 C -0.07 -2.36 9.68 22.20 0.21 -2.15 16 24 H 0.03 1.38 6.30 -2.39 -0.02 1.37 16 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 2.86 5.45 -2.38 -0.01 2.85 16 28 H 0.06 1.71 6.59 -2.39 -0.02 1.70 16 29 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.03 1.31 6.76 -2.39 -0.02 1.29 16 31 H -0.03 -1.98 7.33 -2.39 -0.02 -2.00 16 32 H 0.02 0.90 5.88 -2.39 -0.01 0.89 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.06 2.71 7.28 -2.39 -0.02 2.69 16 35 H 0.04 1.45 6.35 -2.38 -0.02 1.44 16 36 H 0.15 3.36 7.85 -2.91 -0.02 3.34 16 37 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.25 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -68.28 323.46 3.80 -64.49 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 1.03 Total: 13.25 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 4.39 Total: -36.91 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -3.55 Total: -82.75 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.10 Total: -5.03 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -68.28 3.80 -64.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571364460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.325 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds