Wall clock time and date at job start Mon Mar 30 2020 01:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47268 * 2 1 4 4 C 1.50706 * 109.46979 * 119.99689 * 2 1 3 5 5 C 1.38408 * 119.92110 * 300.25648 * 4 2 1 6 6 C 1.38352 * 120.30074 * 180.25792 * 5 4 2 7 7 C 1.37956 * 120.15121 * 359.48367 * 6 5 4 8 8 C 1.39629 * 119.84974 * 0.25797 * 7 6 5 9 9 C 1.47719 * 120.15285 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00187 * 138.84505 * 9 8 7 11 11 N 1.34779 * 120.00411 * 318.85054 * 9 8 7 12 12 C 1.36872 * 120.00470 * 184.57151 * 11 9 8 13 13 H 1.07993 * 119.99834 * 224.30254 * 12 11 9 14 14 C 1.39044 * 119.99738 * 44.29757 * 12 11 9 15 15 N 1.31360 * 120.00622 * 9.62502 * 14 12 11 16 16 Si 1.86810 * 119.99620 * 189.62495 * 14 12 11 17 17 H 1.48497 * 109.46981 * 90.00379 * 16 14 12 18 18 H 1.48498 * 109.46673 * 210.00007 * 16 14 12 19 19 H 1.48493 * 109.47015 * 329.99981 * 16 14 12 20 20 C 1.46504 * 119.99638 * 4.56479 * 11 9 8 21 21 C 1.52998 * 117.49709 * 185.60899 * 20 11 9 22 22 C 1.53001 * 60.00205 * 252.51077 * 21 20 11 23 23 C 1.37911 * 119.92495 * 119.99956 * 4 2 1 24 24 H 1.09003 * 109.46596 * 60.00751 * 1 2 3 25 25 H 1.08998 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47436 * 300.00443 * 1 2 3 27 27 H 1.08992 * 109.47436 * 239.99557 * 2 1 3 28 28 H 1.08993 * 109.47390 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46964 * 300.00103 * 3 2 1 30 30 H 1.09006 * 109.47149 * 59.99685 * 3 2 1 31 31 H 1.07998 * 119.84518 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.92543 * 179.76711 * 6 5 4 33 33 H 1.08008 * 120.07793 * 180.27985 * 7 6 5 34 34 H 0.96998 * 120.00312 * 184.99066 * 15 14 12 35 35 H 1.08999 * 115.55119 * 331.32181 * 20 11 9 36 36 H 1.08998 * 117.50097 * 0.02562 * 21 20 11 37 37 H 1.09009 * 117.49893 * 145.02143 * 21 20 11 38 38 H 1.08988 * 117.50100 * 252.51103 * 22 21 20 39 39 H 1.09001 * 117.51171 * 107.48052 * 22 21 20 40 40 H 1.07997 * 120.07821 * 0.02605 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6925 -0.2391 2.4868 6 6 2.1537 -0.8820 3.6218 7 6 2.9474 -2.0046 3.5080 8 6 3.2896 -2.4886 2.2438 9 6 4.1396 -3.6898 2.1143 10 8 3.8835 -4.5278 1.2712 11 7 5.1990 -3.8570 2.9305 12 6 6.0407 -4.9212 2.7502 13 1 6.3751 -5.4954 3.6015 14 6 6.4651 -5.2629 1.4710 15 7 6.2169 -4.4612 0.4604 16 14 7.3885 -6.8623 1.1894 17 1 6.4196 -7.9468 0.8887 18 1 8.3212 -6.7004 0.0453 19 1 8.1584 -7.2108 2.4104 20 6 5.4497 -2.8996 4.0107 21 6 6.7377 -3.0681 4.8192 22 6 5.3883 -3.4231 5.4471 23 6 2.8250 -1.8316 1.1023 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0677 0.6366 2.5814 32 1 1.8879 -0.5069 4.5990 33 1 3.3030 -2.5082 4.3949 34 1 6.4481 -4.7321 -0.4418 35 1 5.0979 -1.8839 3.8297 36 1 7.3987 -3.8910 4.5472 37 1 7.2336 -2.1630 5.1702 38 1 4.9966 -2.7517 6.2110 39 1 5.1611 -4.4797 5.5883 40 1 3.0863 -2.2004 0.1215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:08 Heat of formation + Delta-G solvation = 21.924532 kcal Electronic energy + Delta-G solvation = -21262.736153 eV Core-core repulsion = 18236.524582 eV Total energy + Delta-G solvation = -3026.211571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.56997 -38.06390 -36.01320 -35.00170 -32.80603 -31.07145 -30.29942 -29.39989 -27.07697 -25.23823 -23.43708 -22.28986 -21.66043 -21.32608 -20.20710 -18.98573 -16.81534 -16.09541 -15.83150 -15.31456 -14.53877 -14.50194 -14.27789 -13.82635 -13.56659 -13.36436 -13.20472 -12.90512 -12.77942 -12.27304 -12.03217 -11.76182 -11.62492 -11.24555 -11.08015 -10.99808 -10.92405 -10.85305 -10.66445 -10.55524 -10.38840 -10.18288 -9.90023 -9.71161 -8.75560 -8.39472 -8.22941 -7.96024 -7.04488 -6.07363 -3.91605 1.65022 1.84830 3.30723 3.36314 3.38115 3.95554 4.22858 4.42749 4.74953 4.90605 4.91930 4.99008 5.27298 5.30541 5.37162 5.45326 5.55689 5.61731 5.63308 5.65269 5.74510 5.82274 5.85675 5.91984 6.00474 6.06168 6.11813 6.20839 6.27445 6.31669 6.40338 6.49445 6.52454 6.74378 6.86291 6.92632 6.99006 7.10755 7.43032 7.59711 8.25940 9.04830 9.16035 9.62324 10.29298 10.97571 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020457 B = 0.005932 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.419960 B = 4718.725234 C = 5634.928942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.089 4.089 5 C -0.117 4.117 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.089 4.089 9 C 0.518 3.482 10 O -0.524 6.524 11 N -0.420 5.420 12 C -0.337 4.337 13 H 0.080 0.920 14 C 0.062 3.938 15 N -0.831 5.831 16 Si 0.914 3.086 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.071 3.929 21 C -0.177 4.177 22 C -0.209 4.209 23 C -0.071 4.071 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.265 0.735 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 10.557 4.183 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.089 4.089 5 C -0.135 4.135 6 C -0.149 4.149 7 C -0.128 4.128 8 C -0.093 4.093 9 C 0.306 3.694 10 O -0.402 6.402 11 N -0.140 5.140 12 C -0.464 4.464 13 H 0.097 0.903 14 C -0.148 4.148 15 N -0.465 5.465 16 Si 0.740 3.260 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.035 4.035 21 C -0.214 4.214 22 C -0.249 4.249 23 C -0.090 4.090 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.869 10.151 3.515 12.751 hybrid contribution 0.543 -0.684 -0.122 0.882 sum -6.326 9.467 3.392 11.881 Atomic orbital electron populations 1.21840 0.94665 1.01995 1.01394 1.20094 0.95641 0.95857 0.95869 1.21842 1.01437 0.95241 1.01386 1.19710 0.98604 0.96127 0.94482 1.20897 1.00654 0.99937 0.92041 1.20968 0.99160 0.96688 0.98068 1.21629 0.97625 0.96214 0.97354 1.20558 0.98742 0.96650 0.93315 1.17755 0.80954 0.86019 0.84658 1.90611 1.70146 1.44349 1.35056 1.42625 1.22227 1.22207 1.26943 1.18919 1.26378 1.07428 0.93663 0.90280 1.25304 0.95631 0.97808 0.96039 1.69821 1.42847 1.34419 0.99366 0.86171 0.79059 0.82892 0.77827 1.20378 1.21159 1.19733 1.21965 1.01118 0.94127 0.86285 1.23116 0.91437 1.03216 1.03668 1.23350 1.02248 1.01973 0.97286 1.21156 0.95497 0.93666 0.98724 0.92733 0.92484 0.92658 0.90439 0.92442 0.92739 0.92663 0.86795 0.86463 0.85128 0.92489 0.87163 0.87518 0.89784 0.89670 0.89001 0.85639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.00 37.16 0.33 -1.24 16 2 C -0.06 -0.73 3.09 -91.77 -0.28 -1.01 16 3 C -0.14 -1.59 9.01 37.16 0.33 -1.25 16 4 C -0.09 -1.42 4.78 -104.68 -0.50 -1.92 16 5 C -0.12 -1.68 8.71 -39.48 -0.34 -2.02 16 6 C -0.13 -1.94 10.03 -39.64 -0.40 -2.34 16 7 C -0.11 -1.96 7.48 -39.17 -0.29 -2.26 16 8 C -0.09 -1.93 5.28 -104.97 -0.55 -2.49 16 9 C 0.52 13.79 6.45 -12.39 -0.08 13.71 16 10 O -0.52 -16.07 14.64 5.28 0.08 -15.99 16 11 N -0.42 -10.76 2.85 -108.83 -0.31 -11.07 16 12 C -0.34 -9.25 7.85 -15.00 -0.12 -9.37 16 13 H 0.08 2.09 7.32 -52.49 -0.38 1.71 16 14 C 0.06 1.76 4.66 -17.45 -0.08 1.68 16 15 N -0.83 -24.81 11.25 55.50 0.62 -24.18 16 16 Si 0.91 21.82 29.57 -169.99 -5.03 16.80 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.07 1.46 4.39 -67.93 -0.30 1.16 16 21 C -0.18 -3.22 9.80 -26.73 -0.26 -3.48 16 22 C -0.21 -3.59 9.54 -26.73 -0.26 -3.84 16 23 C -0.07 -1.43 9.27 -39.17 -0.36 -1.79 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 27 H 0.08 1.05 7.87 -51.93 -0.41 0.64 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.57 7.39 -51.93 -0.38 0.18 16 31 H 0.11 1.32 7.08 -52.49 -0.37 0.95 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.13 2.25 5.54 -52.48 -0.29 1.96 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.11 2.13 5.87 -51.93 -0.30 1.83 16 36 H 0.11 2.14 6.79 -51.93 -0.35 1.79 16 37 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 38 H 0.08 1.20 8.14 -51.94 -0.42 0.77 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.13 2.69 7.94 -52.49 -0.42 2.28 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -32.46 325.51 -8.70 -41.16 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.81 Total: 4.85 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -3.16 Total: -16.46 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.31 Total: -35.26 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.08 Total: -15.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.46 -8.70 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.085 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds