Wall clock time and date at job start Mon Mar 30 2020 01:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47268 * 2 1 4 4 C 1.50706 * 109.46979 * 119.99689 * 2 1 3 5 5 C 1.38408 * 119.92110 * 300.25648 * 4 2 1 6 6 C 1.38352 * 120.30074 * 180.25792 * 5 4 2 7 7 C 1.37956 * 120.15121 * 359.48367 * 6 5 4 8 8 C 1.39629 * 119.84974 * 0.25797 * 7 6 5 9 9 C 1.47719 * 120.15285 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00187 * 138.84505 * 9 8 7 11 11 N 1.34779 * 120.00411 * 318.85054 * 9 8 7 12 12 C 1.36872 * 120.00470 * 184.57151 * 11 9 8 13 13 H 1.07993 * 119.99834 * 224.30254 * 12 11 9 14 14 C 1.39044 * 119.99738 * 44.29757 * 12 11 9 15 15 N 1.31360 * 120.00622 * 9.62502 * 14 12 11 16 16 Si 1.86810 * 119.99620 * 189.62495 * 14 12 11 17 17 H 1.48497 * 109.46981 * 90.00379 * 16 14 12 18 18 H 1.48498 * 109.46673 * 210.00007 * 16 14 12 19 19 H 1.48493 * 109.47015 * 329.99981 * 16 14 12 20 20 C 1.46504 * 119.99638 * 4.56479 * 11 9 8 21 21 C 1.52998 * 117.49709 * 185.60899 * 20 11 9 22 22 C 1.53001 * 60.00205 * 252.51077 * 21 20 11 23 23 C 1.37911 * 119.92495 * 119.99956 * 4 2 1 24 24 H 1.09003 * 109.46596 * 60.00751 * 1 2 3 25 25 H 1.08998 * 109.46975 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47436 * 300.00443 * 1 2 3 27 27 H 1.08992 * 109.47436 * 239.99557 * 2 1 3 28 28 H 1.08993 * 109.47390 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46964 * 300.00103 * 3 2 1 30 30 H 1.09006 * 109.47149 * 59.99685 * 3 2 1 31 31 H 1.07998 * 119.84518 * 0.02562 * 5 4 2 32 32 H 1.07999 * 119.92543 * 179.76711 * 6 5 4 33 33 H 1.08008 * 120.07793 * 180.27985 * 7 6 5 34 34 H 0.96998 * 120.00312 * 184.99066 * 15 14 12 35 35 H 1.08999 * 115.55119 * 331.32181 * 20 11 9 36 36 H 1.08998 * 117.50097 * 0.02562 * 21 20 11 37 37 H 1.09009 * 117.49893 * 145.02143 * 21 20 11 38 38 H 1.08988 * 117.50100 * 252.51103 * 22 21 20 39 39 H 1.09001 * 117.51171 * 107.48052 * 22 21 20 40 40 H 1.07997 * 120.07821 * 0.02605 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6925 -0.2391 2.4868 6 6 2.1537 -0.8820 3.6218 7 6 2.9474 -2.0046 3.5080 8 6 3.2896 -2.4886 2.2438 9 6 4.1396 -3.6898 2.1143 10 8 3.8835 -4.5278 1.2712 11 7 5.1990 -3.8570 2.9305 12 6 6.0407 -4.9212 2.7502 13 1 6.3751 -5.4954 3.6015 14 6 6.4651 -5.2629 1.4710 15 7 6.2169 -4.4612 0.4604 16 14 7.3885 -6.8623 1.1894 17 1 6.4196 -7.9468 0.8887 18 1 8.3212 -6.7004 0.0453 19 1 8.1584 -7.2108 2.4104 20 6 5.4497 -2.8996 4.0107 21 6 6.7377 -3.0681 4.8192 22 6 5.3883 -3.4231 5.4471 23 6 2.8250 -1.8316 1.1023 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 3.1299 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.0677 0.6366 2.5814 32 1 1.8879 -0.5069 4.5990 33 1 3.3030 -2.5082 4.3949 34 1 6.4481 -4.7321 -0.4418 35 1 5.0979 -1.8839 3.8297 36 1 7.3987 -3.8910 4.5472 37 1 7.2336 -2.1630 5.1702 38 1 4.9966 -2.7517 6.2110 39 1 5.1611 -4.4797 5.5883 40 1 3.0863 -2.2004 0.1215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917337.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:07 Heat of formation + Delta-G solvation = 3.138711 kcal Electronic energy + Delta-G solvation = -21263.550767 eV Core-core repulsion = 18236.524582 eV Total energy + Delta-G solvation = -3027.026185 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12820 -39.61400 -37.78061 -36.18610 -34.79894 -32.95041 -31.76415 -30.75033 -27.93975 -27.20879 -24.85323 -23.73079 -23.08767 -22.84924 -21.72696 -20.58540 -18.47434 -17.87086 -17.26692 -16.93304 -16.22966 -16.09696 -15.66674 -15.44728 -14.94305 -14.61656 -14.52806 -14.35992 -14.32532 -13.73443 -13.30645 -13.07226 -12.91151 -12.87860 -12.87149 -12.62048 -12.42061 -12.25595 -12.08238 -11.99107 -11.80781 -11.55421 -11.43982 -11.25912 -10.79896 -10.09967 -9.72500 -9.47545 -9.04406 -8.18697 -6.07971 0.24821 0.51278 1.34324 1.40792 1.47487 2.23282 2.39454 2.87636 3.05538 3.12557 3.41949 3.76483 3.88859 4.03168 4.11141 4.17054 4.22154 4.35039 4.36547 4.42515 4.52680 4.59273 4.66283 4.85983 4.86839 4.90877 5.01921 5.03157 5.09298 5.12160 5.24102 5.28597 5.33766 5.41472 5.43876 5.46265 5.56299 5.65023 5.74746 6.11338 6.17472 6.97435 7.16484 7.60889 8.30440 8.85188 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020457 B = 0.005932 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.419960 B = 4718.725234 C = 5634.928942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.060 4.060 3 C -0.137 4.137 4 C -0.082 4.082 5 C -0.102 4.102 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.124 4.124 9 C 0.503 3.497 10 O -0.589 6.589 11 N -0.435 5.435 12 C -0.347 4.347 13 H 0.084 0.916 14 C 0.005 3.995 15 N -0.872 5.872 16 Si 0.977 3.023 17 H -0.288 1.288 18 H -0.281 1.281 19 H -0.249 1.249 20 C 0.038 3.962 21 C -0.173 4.173 22 C -0.176 4.176 23 C -0.101 4.101 24 H 0.073 0.927 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.258 0.742 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.076 0.924 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 13.479 7.145 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 C -0.194 4.194 4 C -0.082 4.082 5 C -0.119 4.119 6 C -0.131 4.131 7 C -0.129 4.129 8 C -0.127 4.127 9 C 0.293 3.707 10 O -0.471 6.471 11 N -0.153 5.153 12 C -0.475 4.475 13 H 0.102 0.898 14 C -0.200 4.200 15 N -0.508 5.508 16 Si 0.801 3.199 17 H -0.215 1.215 18 H -0.207 1.207 19 H -0.172 1.172 20 C -0.067 4.067 21 C -0.210 4.210 22 C -0.215 4.215 23 C -0.120 4.120 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.177 0.823 32 H 0.183 0.817 33 H 0.155 0.845 34 H 0.067 0.933 35 H 0.141 0.859 36 H 0.100 0.900 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.126 13.097 6.537 16.742 hybrid contribution 0.862 -1.505 -0.972 1.988 sum -7.264 11.592 5.565 14.769 Atomic orbital electron populations 1.21816 0.92581 1.01629 1.03359 1.20182 0.97269 0.96684 0.93739 1.21816 1.00427 0.93781 1.03356 1.20004 0.96878 0.94362 0.96951 1.21408 0.99449 1.00419 0.90665 1.21459 0.96644 0.94575 1.00425 1.21692 0.98308 0.97379 0.95514 1.20278 1.00336 0.96306 0.95769 1.18644 0.81334 0.87009 0.83719 1.90532 1.72090 1.46884 1.37621 1.42841 1.21578 1.22836 1.28071 1.19226 1.25839 1.08664 0.93769 0.89841 1.26255 0.96704 1.01092 0.95969 1.69974 1.45135 1.36299 0.99382 0.85196 0.77695 0.78373 0.78602 1.21496 1.20699 1.17206 1.22196 1.04099 0.93949 0.86417 1.23191 0.91158 1.03872 1.02794 1.23382 1.00655 1.01952 0.95483 1.21024 0.98136 0.96114 0.96733 0.90803 0.94041 0.90666 0.92530 0.94061 0.90829 0.90643 0.82307 0.81689 0.84498 0.93277 0.85939 0.89979 0.86332 0.85105 0.90521 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.00 71.98 0.65 -2.02 16 2 C -0.06 -1.50 3.09 -11.54 -0.04 -1.53 16 3 C -0.14 -2.68 9.01 71.98 0.65 -2.03 16 4 C -0.08 -2.53 4.78 -19.90 -0.10 -2.63 16 5 C -0.10 -2.47 8.71 22.34 0.19 -2.28 16 6 C -0.11 -2.84 10.03 22.23 0.22 -2.62 16 7 C -0.11 -3.78 7.48 22.54 0.17 -3.61 16 8 C -0.12 -5.60 5.28 -20.09 -0.11 -5.71 16 9 C 0.50 28.58 6.45 86.75 0.56 29.14 16 10 O -0.59 -39.30 14.64 -4.02 -0.06 -39.36 16 11 N -0.43 -23.21 2.85 -616.50 -1.76 -24.97 16 12 C -0.35 -19.92 7.85 84.10 0.66 -19.26 16 13 H 0.08 4.55 7.32 -2.91 -0.02 4.53 16 14 C 0.01 0.30 4.66 84.96 0.40 0.70 16 15 N -0.87 -55.80 11.25 21.68 0.24 -55.55 16 16 Si 0.98 46.84 29.57 68.60 2.03 48.87 16 17 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 20 C 0.04 1.54 4.39 44.99 0.20 1.74 16 21 C -0.17 -6.01 9.80 30.59 0.30 -5.71 16 22 C -0.18 -5.58 9.54 30.60 0.29 -5.29 16 23 C -0.10 -4.29 9.27 22.54 0.21 -4.08 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.18 7.36 -2.39 -0.02 1.16 16 27 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.18 7.39 -2.38 -0.02 1.16 16 31 H 0.16 2.55 7.08 -2.91 -0.02 2.53 16 32 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.14 4.42 5.54 -2.91 -0.02 4.41 16 34 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 35 H 0.12 4.61 5.87 -2.39 -0.01 4.59 16 36 H 0.08 3.28 6.79 -2.39 -0.02 3.27 16 37 H 0.12 3.28 8.14 -2.38 -0.02 3.26 16 38 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.09 4.20 7.94 -2.91 -0.02 4.18 16 Total: -1.00 -79.65 325.51 5.74 -73.91 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 1.02 Total: 22.29 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 4.26 Total: -25.19 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.52 Total: -80.52 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.06 Total: -39.36 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -79.65 5.74 -73.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917337.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.045 kcal (2) G-P(sol) polarization free energy of solvation -79.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds