Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21555 * 119.99541 * 359.97438 * 14 13 3 16 16 C 1.47837 * 120.00066 * 180.02562 * 14 13 3 17 17 C 1.39573 * 120.14708 * 359.71765 * 16 14 13 18 18 C 1.37961 * 119.85608 * 179.74547 * 17 16 14 19 19 C 1.38363 * 120.14157 * 0.53645 * 18 17 16 20 20 C 1.50696 * 119.85013 * 179.76282 * 19 18 17 21 21 C 1.52997 * 117.50341 * 8.72576 * 20 19 18 22 22 C 1.52996 * 117.50234 * 300.06172 * 20 19 18 23 23 C 1.38360 * 120.29146 * 359.73663 * 19 18 17 24 24 C 1.37956 * 120.14695 * 359.97438 * 23 19 18 25 25 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 26 26 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 28 28 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 29 29 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 32 32 H 1.08006 * 120.06954 * 0.02562 * 17 16 14 33 33 H 1.08000 * 119.92864 * 180.27273 * 18 17 16 34 34 H 1.09006 * 115.54678 * 154.39355 * 20 19 18 35 35 H 1.09002 * 117.49763 * 359.97438 * 21 20 19 36 36 H 1.08998 * 117.50483 * 145.01874 * 21 20 19 37 37 H 1.08999 * 117.50192 * 214.98205 * 22 20 19 38 38 H 1.09001 * 117.49591 * 359.97438 * 22 20 19 39 39 H 1.07998 * 119.92429 * 180.02562 * 23 19 18 40 40 H 1.07997 * 120.07569 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5992 1.5338 0.1874 11 1 6.4051 1.6106 2.6036 12 1 6.4917 -0.5266 1.4610 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3413 2.6319 -0.4322 16 6 0.0437 3.3249 -2.6304 17 6 0.9347 3.3683 -3.7039 18 6 0.5613 3.9816 -4.8820 19 6 -0.6892 4.5626 -4.9968 20 6 -1.0882 5.2354 -6.2848 21 6 -0.1578 5.0670 -7.4877 22 6 -0.2344 6.4122 -6.7612 23 6 -1.5750 4.5281 -3.9345 24 6 -1.2163 3.9128 -2.7530 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.8292 -0.0558 2.9526 31 1 2.2719 2.1232 -1.9978 32 1 1.9126 2.9187 -3.6141 33 1 1.2481 4.0119 -5.7149 34 1 -2.1598 5.2797 -6.4797 35 1 0.7432 4.4698 -7.3473 36 1 -0.6171 5.0008 -8.4739 37 1 -0.7441 7.2305 -7.2699 38 1 0.6158 6.7000 -6.1427 39 1 -2.5497 4.9831 -4.0308 40 1 -1.9085 3.8869 -1.9244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = 2.659320 kcal Electronic energy + Delta-G solvation = -20413.456946 eV Core-core repulsion = 17386.409973 eV Total energy + Delta-G solvation = -3027.046973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99551 -38.64547 -36.59181 -35.01140 -32.54453 -31.43093 -30.70656 -30.17093 -27.01271 -24.59504 -22.99636 -22.93422 -22.27225 -21.11602 -19.98130 -19.28901 -17.93184 -16.61109 -16.01063 -15.38617 -15.09460 -14.78032 -14.59631 -14.47709 -13.93613 -13.59889 -13.21882 -12.85267 -12.72235 -12.61915 -11.95676 -11.80403 -11.51143 -11.45302 -11.24765 -11.07728 -10.95168 -10.86563 -10.76591 -10.54836 -10.30647 -10.17139 -9.62274 -9.08121 -9.02208 -8.92790 -8.53139 -8.50016 -7.80422 -6.12520 -4.21823 1.00334 1.44041 3.19424 3.23596 3.31509 3.34062 3.73471 4.07718 4.22978 4.33750 4.39450 4.61419 4.72156 4.82358 4.96287 5.07336 5.18979 5.35921 5.42743 5.43571 5.55474 5.59255 5.82666 5.83405 5.93945 6.05407 6.40198 6.41133 6.48074 6.53088 6.55458 6.68196 6.94203 7.06457 7.21722 7.37696 7.45419 7.62692 7.74273 7.90651 8.18070 8.66644 8.77879 9.12649 9.45525 10.92968 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025285 B = 0.003999 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.103672 B = 7000.057945 C = 7768.811513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.541 3.459 15 O -0.546 6.546 16 C -0.124 4.124 17 C -0.085 4.085 18 C -0.131 4.131 19 C -0.041 4.041 20 C -0.119 4.119 21 C -0.177 4.177 22 C -0.169 4.169 23 C -0.124 4.124 24 C -0.062 4.062 25 H 0.038 0.962 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.031 0.969 29 H 0.099 0.901 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 7.917 -16.736 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.326 3.674 15 O -0.426 6.426 16 C -0.127 4.127 17 C -0.103 4.103 18 C -0.148 4.148 19 C -0.041 4.041 20 C -0.137 4.137 21 C -0.214 4.214 22 C -0.206 4.206 23 C -0.142 4.142 24 C -0.081 4.081 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.143 0.857 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.992 7.768 -15.842 18.979 hybrid contribution 1.305 -0.076 -0.259 1.333 sum -5.687 7.692 -16.101 18.729 Atomic orbital electron populations 1.21847 0.98328 0.98066 1.01283 1.21932 0.92661 0.99731 1.02274 1.18824 0.94264 0.89221 0.80901 0.93158 1.21266 0.90673 1.39100 1.06226 0.92054 1.24889 0.98623 0.94787 0.95376 1.69910 1.35029 1.37744 1.09207 0.86400 0.84859 0.77767 0.78121 1.19752 1.20870 1.20868 1.46463 1.14399 1.55472 1.18564 1.18180 0.82984 0.79342 0.86867 1.90732 1.51555 1.60232 1.40032 1.20361 0.95599 1.01619 0.95167 1.21369 0.99078 0.97478 0.92413 1.20930 0.96356 0.99722 0.97828 1.19249 0.94072 0.97020 0.93769 1.21061 0.97776 1.02198 0.92632 1.23089 1.01954 1.00298 0.96072 1.23043 1.02458 0.91661 1.03466 1.20878 0.99718 1.00888 0.92744 1.21276 0.95319 0.94082 0.97418 0.94257 0.95828 0.93117 0.95029 0.88262 0.92607 0.77955 0.85376 0.85724 0.86933 0.88188 0.88481 0.88502 0.88433 0.85739 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.83 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.68 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.70 11.31 55.43 0.63 -24.07 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -14.86 4.97 -55.88 -0.28 -15.14 16 14 C 0.54 11.19 6.34 -12.33 -0.08 11.11 16 15 O -0.55 -13.02 13.48 5.32 0.07 -12.95 16 16 C -0.12 -2.06 5.87 -104.97 -0.62 -2.68 16 17 C -0.08 -1.17 9.54 -39.19 -0.37 -1.55 16 18 C -0.13 -1.54 9.28 -39.64 -0.37 -1.91 16 19 C -0.04 -0.46 5.62 -104.53 -0.59 -1.05 16 20 C -0.12 -1.05 6.03 -91.78 -0.55 -1.60 16 21 C -0.18 -1.33 9.86 -26.69 -0.26 -1.59 16 22 C -0.17 -1.30 10.16 -26.70 -0.27 -1.58 16 23 C -0.12 -1.51 9.72 -39.64 -0.39 -1.90 16 24 C -0.06 -0.93 9.60 -39.18 -0.38 -1.30 16 25 H 0.04 0.88 5.64 -51.93 -0.29 0.58 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 2.68 5.96 -51.93 -0.31 2.37 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 7.15 6.57 -40.82 -0.27 6.88 16 32 H 0.13 1.61 6.41 -52.48 -0.34 1.28 16 33 H 0.12 1.19 6.00 -52.49 -0.32 0.87 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.74 6.17 -51.93 -0.32 0.42 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.14 2.04 7.65 -52.49 -0.40 1.64 16 LS Contribution 325.63 15.07 4.91 4.91 Total: -1.00 -30.07 325.63 -9.49 -39.56 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.55 Total: 8.33 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -4.25 Total: -16.19 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.35 Total: -39.21 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.07 Total: -12.95 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.07 -9.49 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.224 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds