Wall clock time and date at job start Mon Mar 30 2020 01:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47542 * 2 1 4 4 C 1.50697 * 109.46714 * 120.00495 * 2 1 3 5 5 C 1.38262 * 120.14245 * 299.97132 * 4 2 1 6 6 C 1.37913 * 119.82904 * 180.26042 * 5 4 2 7 7 C 1.38983 * 120.57982 * 359.96541 * 6 5 4 8 8 C 1.37668 * 119.51820 * 359.63825 * 7 6 5 9 9 C 1.37964 * 120.14499 * 120.00204 * 4 2 1 10 10 C 1.50818 * 122.35639 * 180.65665 * 8 7 6 11 11 N 1.46687 * 109.66706 * 348.90472 * 10 8 7 12 12 C 1.34778 * 121.34862 * 224.35673 * 11 10 8 13 13 O 1.21681 * 119.99768 * 174.75461 * 12 11 10 14 14 C 1.46375 * 119.99789 * 354.75855 * 12 11 10 15 15 H 1.07995 * 120.00222 * 4.99113 * 14 12 11 16 16 C 1.40049 * 119.99784 * 184.99932 * 14 12 11 17 17 N 1.30670 * 120.00034 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99848 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47036 * 90.00027 * 18 16 14 20 20 H 1.48498 * 109.46798 * 209.99705 * 18 16 14 21 21 H 1.48496 * 109.47412 * 329.99776 * 18 16 14 22 22 C 1.47235 * 117.30224 * 44.33436 * 11 10 8 23 23 C 1.50609 * 117.60538 * 179.53280 * 7 6 5 24 24 H 1.08998 * 109.47052 * 299.99900 * 1 2 3 25 25 H 1.09011 * 109.47321 * 59.99559 * 1 2 3 26 26 H 1.08996 * 109.47684 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47091 * 239.99688 * 2 1 3 28 28 H 1.09000 * 109.47065 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46971 * 300.00359 * 3 2 1 30 30 H 1.08998 * 109.46866 * 59.99986 * 3 2 1 31 31 H 1.08001 * 120.08966 * 0.24138 * 5 4 2 32 32 H 1.07995 * 119.70492 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.74097 * 359.95336 * 9 4 2 34 34 H 1.08998 * 109.43598 * 228.84252 * 10 8 7 35 35 H 1.08998 * 109.40589 * 108.94495 * 10 8 7 36 36 H 0.97001 * 119.99890 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.77466 * 176.06786 * 22 11 10 38 38 H 1.08997 * 109.82311 * 55.28701 * 22 11 10 39 39 H 1.09003 * 109.19899 * 40.05610 * 23 7 6 40 40 H 1.08993 * 109.20404 * 280.76562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 1.7004 -0.2404 2.4876 6 6 2.1680 -0.8926 3.6093 7 6 2.9708 -2.0206 3.4881 8 6 3.2934 -2.4922 2.2356 9 6 2.8256 -1.8325 1.1073 10 6 4.1472 -3.7183 2.0301 11 7 4.7548 -4.1162 3.3045 12 6 6.0533 -4.4686 3.3825 13 8 6.5564 -4.7020 4.4656 14 6 6.8585 -4.5703 2.1643 15 1 6.4356 -4.2856 1.2122 16 6 8.1771 -5.0370 2.2334 17 7 8.6888 -5.3811 3.3854 18 14 9.2043 -5.1674 0.6786 19 1 9.9305 -3.8913 0.4566 20 1 10.1829 -6.2750 0.8235 21 1 8.3164 -5.4398 -0.4800 22 6 3.8887 -4.1145 4.4952 23 6 3.4528 -2.6737 4.7568 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4423 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.0769 0.6353 2.5911 32 1 1.9080 -0.5234 4.5903 33 1 3.0848 -2.2002 0.1254 34 1 4.9325 -3.4965 1.3074 35 1 3.5275 -4.5323 1.6539 36 1 9.6023 -5.7040 3.4333 37 1 4.4421 -4.4941 5.3542 38 1 3.0128 -4.7381 4.3160 39 1 2.6465 -2.6706 5.4903 40 1 4.2977 -2.1096 5.1517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597963116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:04 Heat of formation + Delta-G solvation = -29.349474 kcal Electronic energy + Delta-G solvation = -20837.979705 eV Core-core repulsion = 17809.544726 eV Total energy + Delta-G solvation = -3028.434979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.90045 -37.76772 -35.89437 -33.92763 -32.57758 -32.21237 -30.25483 -28.73819 -27.23330 -26.35128 -24.71558 -23.46586 -21.93899 -21.46436 -19.61347 -18.43219 -16.62048 -16.14035 -15.66549 -15.06718 -14.93172 -14.50645 -14.24499 -14.02415 -13.63398 -13.46582 -13.44265 -13.02882 -12.48066 -12.33062 -12.27135 -12.23861 -11.78658 -11.48955 -11.40571 -11.20431 -11.11714 -10.98693 -10.92197 -10.75418 -10.57069 -10.31022 -10.15516 -10.00918 -8.87221 -8.47358 -8.09223 -7.61604 -7.25981 -6.21649 -4.66641 1.61676 1.66112 3.13064 3.19936 3.22846 3.96631 4.07002 4.49057 4.55626 4.69332 4.78351 5.13366 5.15207 5.17330 5.22908 5.38929 5.50662 5.54601 5.59577 5.66960 5.71559 5.79196 5.83762 5.87521 5.94601 5.99405 6.10595 6.15300 6.23201 6.24626 6.33871 6.41432 6.49472 6.65484 6.73677 6.83083 7.01382 7.29701 7.43204 7.56425 8.09900 8.33918 9.00259 9.41456 10.55350 10.73826 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.004958 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.263495 B = 5645.726779 C = 6646.125195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.067 4.067 8 C -0.078 4.078 9 C -0.115 4.115 10 C 0.161 3.839 11 N -0.642 5.642 12 C 0.563 3.437 13 O -0.576 6.576 14 C -0.544 4.544 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.119 3.881 23 C -0.096 4.096 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.269 0.731 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 9.708 -5.933 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.067 4.067 8 C -0.079 4.079 9 C -0.134 4.134 10 C 0.037 3.963 11 N -0.380 5.380 12 C 0.369 3.631 13 O -0.458 6.458 14 C -0.580 4.580 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.396 5.396 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.005 4.005 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.917 9.477 -5.209 17.625 hybrid contribution 0.402 0.085 -0.798 0.897 sum -13.515 9.562 -6.007 17.612 Atomic orbital electron populations 1.21842 0.94666 1.01902 1.01538 1.20073 0.95638 0.95912 0.95654 1.21847 1.01440 0.95255 1.01511 1.19646 0.98506 0.96028 0.94396 1.20730 1.01208 1.00052 0.92077 1.21120 0.98750 0.95892 0.98292 1.19584 0.96900 0.95549 0.94655 1.20209 0.97653 0.97608 0.92474 1.20944 0.98594 0.95704 0.98118 1.20247 0.95530 0.91609 0.88962 1.48189 1.10910 1.73041 1.05866 1.18210 0.78173 0.76230 0.90507 1.90589 1.69899 1.54922 1.30437 1.20959 0.97281 1.46660 0.93130 0.91027 1.25719 0.97773 0.93026 0.96644 1.70011 1.13953 1.30827 1.24822 0.86393 0.79799 0.78404 0.82339 1.19698 1.20404 1.18828 1.21125 0.93823 0.93790 0.91739 1.20857 1.00523 0.97952 0.94051 0.92614 0.92708 0.92570 0.90604 0.92427 0.92694 0.92618 0.86801 0.86672 0.86233 0.88196 0.92504 0.92052 0.89369 0.93402 0.91133 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.01 37.16 0.33 -0.93 16 2 C -0.05 -0.56 3.10 -91.78 -0.28 -0.84 16 3 C -0.14 -1.35 9.01 37.16 0.33 -1.02 16 4 C -0.09 -1.12 4.77 -104.71 -0.50 -1.62 16 5 C -0.12 -1.59 8.72 -39.69 -0.35 -1.93 16 6 C -0.12 -1.74 9.59 -39.42 -0.38 -2.12 16 7 C -0.07 -1.12 5.76 -104.60 -0.60 -1.72 16 8 C -0.08 -1.35 5.82 -104.55 -0.61 -1.96 16 9 C -0.12 -1.70 9.26 -39.46 -0.37 -2.07 16 10 C 0.16 3.12 6.02 -5.03 -0.03 3.09 16 11 N -0.64 -14.93 2.93 -176.04 -0.52 -15.44 16 12 C 0.56 16.13 7.64 -12.99 -0.10 16.04 16 13 O -0.58 -18.68 14.54 5.21 0.08 -18.61 16 14 C -0.54 -15.26 8.83 -35.63 -0.31 -15.57 16 15 H 0.07 1.83 5.88 -52.49 -0.31 1.52 16 16 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 17 N -0.77 -22.95 11.84 55.55 0.66 -22.29 16 18 Si 0.91 20.01 29.56 -169.99 -5.02 14.99 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 22 C 0.12 2.38 6.43 -3.75 -0.02 2.36 16 23 C -0.10 -1.63 5.87 -28.03 -0.16 -1.79 16 24 H 0.05 0.48 7.40 -51.93 -0.38 0.10 16 25 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.51 7.41 -51.93 -0.38 0.12 16 31 H 0.11 1.22 7.14 -52.49 -0.37 0.85 16 32 H 0.12 1.40 8.05 -52.49 -0.42 0.98 16 33 H 0.12 1.56 7.93 -52.49 -0.42 1.15 16 34 H 0.10 2.01 5.70 -51.93 -0.30 1.71 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.27 7.28 8.29 -40.82 -0.34 6.95 16 37 H 0.09 1.92 7.10 -51.93 -0.37 1.56 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -33.47 323.39 -8.96 -42.42 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.88 Total: 1.80 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -3.14 Total: -7.74 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.14 Total: -37.74 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.08 Total: -18.61 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.47 -8.96 -42.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597963116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.074 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds