Wall clock time and date at job start Mon Mar 30 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47542 * 2 1 4 4 C 1.50697 * 109.46714 * 120.00495 * 2 1 3 5 5 C 1.38262 * 120.14245 * 299.97132 * 4 2 1 6 6 C 1.37913 * 119.82904 * 180.26042 * 5 4 2 7 7 C 1.38983 * 120.57982 * 359.96541 * 6 5 4 8 8 C 1.37668 * 119.51820 * 359.63825 * 7 6 5 9 9 C 1.37964 * 120.14499 * 120.00204 * 4 2 1 10 10 C 1.50818 * 122.35639 * 180.65665 * 8 7 6 11 11 N 1.46687 * 109.66706 * 348.90472 * 10 8 7 12 12 C 1.34778 * 121.34862 * 224.35673 * 11 10 8 13 13 O 1.21681 * 119.99768 * 174.75461 * 12 11 10 14 14 C 1.46375 * 119.99789 * 354.75855 * 12 11 10 15 15 H 1.07995 * 120.00222 * 4.99113 * 14 12 11 16 16 C 1.40049 * 119.99784 * 184.99932 * 14 12 11 17 17 N 1.30670 * 120.00034 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99848 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47036 * 90.00027 * 18 16 14 20 20 H 1.48498 * 109.46798 * 209.99705 * 18 16 14 21 21 H 1.48496 * 109.47412 * 329.99776 * 18 16 14 22 22 C 1.47235 * 117.30224 * 44.33436 * 11 10 8 23 23 C 1.50609 * 117.60538 * 179.53280 * 7 6 5 24 24 H 1.08998 * 109.47052 * 299.99900 * 1 2 3 25 25 H 1.09011 * 109.47321 * 59.99559 * 1 2 3 26 26 H 1.08996 * 109.47684 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47091 * 239.99688 * 2 1 3 28 28 H 1.09000 * 109.47065 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.46971 * 300.00359 * 3 2 1 30 30 H 1.08998 * 109.46866 * 59.99986 * 3 2 1 31 31 H 1.08001 * 120.08966 * 0.24138 * 5 4 2 32 32 H 1.07995 * 119.70492 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.74097 * 359.95336 * 9 4 2 34 34 H 1.08998 * 109.43598 * 228.84252 * 10 8 7 35 35 H 1.08998 * 109.40589 * 108.94495 * 10 8 7 36 36 H 0.97001 * 119.99890 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.77466 * 176.06786 * 22 11 10 38 38 H 1.08997 * 109.82311 * 55.28701 * 22 11 10 39 39 H 1.09003 * 109.19899 * 40.05610 * 23 7 6 40 40 H 1.08993 * 109.20404 * 280.76562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 1.7004 -0.2404 2.4876 6 6 2.1680 -0.8926 3.6093 7 6 2.9708 -2.0206 3.4881 8 6 3.2934 -2.4922 2.2356 9 6 2.8256 -1.8325 1.1073 10 6 4.1472 -3.7183 2.0301 11 7 4.7548 -4.1162 3.3045 12 6 6.0533 -4.4686 3.3825 13 8 6.5564 -4.7020 4.4656 14 6 6.8585 -4.5703 2.1643 15 1 6.4356 -4.2856 1.2122 16 6 8.1771 -5.0370 2.2334 17 7 8.6888 -5.3811 3.3854 18 14 9.2043 -5.1674 0.6786 19 1 9.9305 -3.8913 0.4566 20 1 10.1829 -6.2750 0.8235 21 1 8.3164 -5.4398 -0.4800 22 6 3.8887 -4.1145 4.4952 23 6 3.4528 -2.6737 4.7568 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4423 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.0769 0.6353 2.5911 32 1 1.9080 -0.5234 4.5903 33 1 3.0848 -2.2002 0.1254 34 1 4.9325 -3.4965 1.3074 35 1 3.5275 -4.5323 1.6539 36 1 9.6023 -5.7040 3.4333 37 1 4.4421 -4.4941 5.3542 38 1 3.0128 -4.7381 4.3160 39 1 2.6465 -2.6706 5.4903 40 1 4.2977 -2.1096 5.1517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597963116.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:03 Heat of formation + Delta-G solvation = -48.807880 kcal Electronic energy + Delta-G solvation = -20838.823485 eV Core-core repulsion = 17809.544726 eV Total energy + Delta-G solvation = -3029.278759 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17481 -39.47213 -37.34778 -35.38479 -34.65367 -33.60951 -31.66105 -30.03003 -28.35226 -27.91425 -26.26802 -24.80807 -23.14688 -22.77659 -21.13294 -19.92921 -18.37165 -17.81256 -17.16496 -16.42615 -16.35294 -16.06871 -15.77835 -15.32997 -14.87766 -14.68123 -14.45766 -14.36332 -13.95259 -13.79961 -13.63884 -13.36841 -13.21300 -13.01259 -12.84700 -12.73761 -12.46773 -12.40320 -12.12450 -12.03023 -11.94298 -11.79854 -11.44981 -11.38006 -10.94919 -9.89515 -9.60718 -9.26476 -9.13124 -8.31552 -6.87046 0.47337 0.51550 1.38587 1.40152 1.55404 2.22256 2.43202 2.77283 2.83111 3.53614 3.73623 3.80452 3.94718 4.07748 4.14258 4.27478 4.33885 4.39086 4.48195 4.50746 4.60857 4.69602 4.77278 4.80278 4.87193 4.87787 4.99663 5.05182 5.05753 5.14551 5.22093 5.30081 5.34776 5.38802 5.45727 5.56078 5.68259 5.78098 5.85088 6.08048 6.17028 6.36466 6.85146 7.38083 8.42792 8.64567 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.004958 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.263495 B = 5645.726779 C = 6646.125195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 C -0.142 4.142 4 C -0.080 4.080 5 C -0.117 4.117 6 C -0.122 4.122 7 C -0.091 4.091 8 C -0.101 4.101 9 C -0.123 4.123 10 C 0.162 3.838 11 N -0.646 5.646 12 C 0.544 3.456 13 O -0.630 6.630 14 C -0.569 4.569 15 H 0.091 0.909 16 C 0.030 3.970 17 N -0.822 5.822 18 Si 0.995 3.005 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.246 1.246 22 C 0.115 3.885 23 C -0.085 4.085 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.275 0.725 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 11.612 -8.340 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.080 4.080 5 C -0.135 4.135 6 C -0.139 4.139 7 C -0.092 4.092 8 C -0.102 4.102 9 C -0.141 4.141 10 C 0.039 3.961 11 N -0.382 5.382 12 C 0.350 3.650 13 O -0.517 6.517 14 C -0.605 4.605 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.451 5.451 18 Si 0.814 3.186 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.169 1.169 22 C -0.008 4.008 23 C -0.123 4.123 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.892 11.404 -7.637 20.999 hybrid contribution 0.868 -0.450 -0.038 0.979 sum -15.024 10.954 -7.675 20.115 Atomic orbital electron populations 1.21823 0.93242 1.01909 1.02680 1.20146 0.96721 0.96123 0.94291 1.21842 1.00625 0.94737 1.02715 1.20013 0.97052 0.95068 0.95849 1.21094 1.00530 1.00383 0.91477 1.21344 0.97750 0.94824 1.00018 1.19635 0.98536 0.97081 0.93904 1.20076 0.98751 0.97512 0.93833 1.21098 0.98913 0.96268 0.97823 1.20309 0.95533 0.93461 0.86817 1.48030 1.09941 1.71944 1.08330 1.18617 0.80007 0.76146 0.90200 1.90532 1.71802 1.57379 1.32031 1.21482 0.98241 1.47024 0.93795 0.89072 1.26993 0.99014 0.91705 1.00832 1.70186 1.14785 1.31995 1.28178 0.85056 0.77643 0.78771 0.77105 1.18721 1.19628 1.16897 1.21282 0.93474 0.96483 0.89582 1.20723 1.00758 0.95233 0.95572 0.92077 0.91040 0.93143 0.90316 0.93718 0.90903 0.92095 0.83891 0.84441 0.85080 0.89449 0.91256 0.91536 0.92325 0.91132 0.87699 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.01 71.98 0.65 -1.31 16 2 C -0.05 -0.94 3.10 -11.54 -0.04 -0.98 16 3 C -0.14 -2.20 9.01 71.98 0.65 -1.55 16 4 C -0.08 -1.86 4.77 -19.92 -0.10 -1.95 16 5 C -0.12 -2.63 8.72 22.20 0.19 -2.44 16 6 C -0.12 -3.15 9.59 22.37 0.21 -2.93 16 7 C -0.09 -2.97 5.76 -19.85 -0.11 -3.09 16 8 C -0.10 -3.42 5.82 -19.82 -0.12 -3.54 16 9 C -0.12 -3.43 9.26 22.35 0.21 -3.23 16 10 C 0.16 6.38 6.02 85.63 0.52 6.90 16 11 N -0.65 -31.26 2.93 -829.08 -2.43 -33.69 16 12 C 0.54 32.79 7.64 86.36 0.66 33.45 16 13 O -0.63 -43.51 14.54 -4.29 -0.06 -43.58 16 14 C -0.57 -32.89 8.83 24.83 0.22 -32.67 16 15 H 0.09 4.72 5.88 -2.91 -0.02 4.70 16 16 C 0.03 1.68 5.50 85.31 0.47 2.15 16 17 N -0.82 -51.11 11.84 21.84 0.26 -50.85 16 18 Si 1.00 41.30 29.56 68.60 2.03 43.33 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 22 C 0.12 4.77 6.43 86.17 0.55 5.32 16 23 C -0.08 -2.91 5.87 29.75 0.17 -2.74 16 24 H 0.06 0.80 7.40 -2.39 -0.02 0.78 16 25 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 1.33 7.88 -2.38 -0.02 1.31 16 28 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.88 7.41 -2.39 -0.02 0.86 16 31 H 0.14 2.39 7.14 -2.91 -0.02 2.37 16 32 H 0.14 2.89 8.05 -2.91 -0.02 2.86 16 33 H 0.13 3.24 7.93 -2.91 -0.02 3.22 16 34 H 0.09 3.58 5.70 -2.39 -0.01 3.57 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 37 H 0.06 2.74 7.10 -2.39 -0.02 2.72 16 38 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.10 2.80 8.11 -2.39 -0.02 2.78 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.86 323.39 4.96 -71.90 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.03 Total: 21.48 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 4.14 Total: -8.59 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.17 Total: -84.54 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.06 Total: -43.58 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -76.86 4.96 -71.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597963116.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.091 kcal (2) G-P(sol) polarization free energy of solvation -76.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds