Wall clock time and date at job start Mon Mar 30 2020 01:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00004 * 2 1 4 4 C 1.53005 * 109.46871 * 124.99884 * 3 2 1 5 5 N 1.46506 * 109.46773 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99707 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99804 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47066 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47486 * 54.05268 * 9 8 6 11 11 C 1.50698 * 109.46901 * 294.05498 * 9 8 6 12 12 H 1.08002 * 120.00397 * 330.08136 * 11 9 8 13 13 C 1.37877 * 119.99983 * 150.08139 * 11 9 8 14 14 N 1.31513 * 120.00147 * 6.55933 * 13 11 9 15 15 Si 1.86806 * 120.00054 * 186.55449 * 13 11 9 16 16 H 1.48501 * 109.47229 * 179.97438 * 15 13 11 17 17 H 1.48498 * 109.47340 * 300.00345 * 15 13 11 18 18 H 1.48505 * 109.46728 * 60.00313 * 15 13 11 19 19 C 1.50704 * 109.47322 * 174.05774 * 9 8 6 20 20 C 1.38232 * 120.00156 * 64.30019 * 19 9 8 21 21 C 1.38227 * 120.00423 * 179.81276 * 20 19 9 22 22 C 1.38243 * 119.99751 * 0.39675 * 21 20 19 23 23 C 1.38236 * 119.99618 * 359.85625 * 22 21 20 24 24 C 1.38229 * 120.00074 * 359.95579 * 23 22 21 25 25 H 1.08000 * 119.99783 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99856 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.00077 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47426 * 4.99951 * 3 2 1 29 29 H 1.09003 * 109.47451 * 244.99769 * 3 2 1 30 30 H 1.08999 * 109.47178 * 60.00604 * 4 3 2 31 31 H 1.08992 * 109.47341 * 299.99788 * 4 3 2 32 32 H 0.97001 * 120.00254 * 0.02562 * 5 4 3 33 33 H 1.08997 * 109.47426 * 60.00323 * 8 6 5 34 34 H 1.09004 * 109.47237 * 299.99638 * 8 6 5 35 35 H 0.96997 * 119.99910 * 354.72326 * 14 13 11 36 36 H 1.08007 * 119.99790 * 359.97438 * 20 19 9 37 37 H 1.08004 * 120.00499 * 180.23296 * 21 20 19 38 38 H 1.08002 * 119.99679 * 179.83680 * 22 21 20 39 39 H 1.07995 * 119.99385 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 7 3.7671 2.6020 1.1820 6 6 4.6833 2.8511 2.1385 7 8 4.9021 2.0245 2.9987 8 6 5.4368 4.1562 2.1386 9 6 6.4082 4.1842 3.3203 10 1 7.0447 3.3000 3.2886 11 6 5.6295 4.1966 4.6104 12 1 4.6518 4.6541 4.6468 13 6 6.1652 3.6239 5.7445 14 7 7.4040 3.1825 5.7359 15 14 5.1313 3.4750 7.2932 16 1 5.9326 2.8279 8.3630 17 1 4.7099 4.8274 7.7390 18 1 3.9293 2.6507 7.0085 19 6 7.2638 5.4222 3.2381 20 6 6.6837 6.6719 3.3499 21 6 7.4689 7.8073 3.2784 22 6 8.8332 7.6932 3.0868 23 6 9.4125 6.4435 2.9698 24 6 8.6278 5.3081 3.0452 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6214 1.4026 -0.9314 30 1 3.7400 0.5065 1.0921 31 1 2.4773 1.2355 2.1130 32 1 3.5919 3.2633 0.4943 33 1 4.7319 4.9828 2.2276 34 1 5.9951 4.2535 1.2074 35 1 7.9156 3.1895 4.9119 36 1 5.6173 6.7612 3.4958 37 1 7.0162 8.7836 3.3695 38 1 9.4463 8.5804 3.0283 39 1 10.4783 6.3544 2.8197 40 1 9.0805 4.3318 2.9542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597972267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:03 Heat of formation + Delta-G solvation = -9.543737 kcal Electronic energy + Delta-G solvation = -20364.608562 eV Core-core repulsion = 17337.032424 eV Total energy + Delta-G solvation = -3027.576138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.18380 -38.29820 -36.09082 -34.27314 -33.42158 -31.33052 -30.10413 -29.58232 -28.29871 -25.08985 -23.28798 -22.42064 -21.64684 -20.49273 -19.93875 -19.27248 -16.91930 -16.33877 -15.87363 -15.60863 -15.46380 -14.81943 -14.33554 -14.12659 -13.72860 -13.61742 -13.22193 -12.96307 -12.65318 -12.40878 -12.30240 -12.00538 -11.82730 -11.48893 -11.33260 -11.25666 -10.85223 -10.68763 -10.42109 -10.12518 -10.02516 -9.63728 -9.55693 -9.00271 -8.64311 -8.55300 -8.24096 -8.13167 -7.62160 -6.21246 -3.88628 2.07378 2.19920 2.25906 3.49221 3.52259 3.57612 3.69819 3.72563 4.62250 4.68419 4.74942 4.91309 5.08230 5.20430 5.46082 5.52840 5.60361 5.64203 5.67401 5.71326 5.77250 5.94214 6.01547 6.11208 6.12177 6.19410 6.32534 6.41923 6.43461 6.56258 6.70604 6.80192 6.90086 6.94388 7.21596 7.23507 7.39518 7.73594 7.86888 8.05652 8.24914 8.52774 8.99247 9.05042 9.80636 11.19176 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.004981 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.733294 B = 5620.121247 C = 6861.368595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.148 4.148 3 C -0.105 4.105 4 C 0.126 3.874 5 N -0.751 5.751 6 C 0.512 3.488 7 O -0.499 6.499 8 C -0.117 4.117 9 C 0.072 3.928 10 H 0.051 0.949 11 C -0.567 4.567 12 H 0.045 0.955 13 C 0.032 3.968 14 N -0.906 5.906 15 Si 1.062 2.938 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.289 1.289 19 C -0.030 4.030 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.153 4.153 23 C -0.124 4.124 24 C -0.130 4.130 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.392 0.608 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.269 0.731 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 1.396 -12.720 14.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.167 4.167 3 C -0.142 4.142 4 C 0.002 3.998 5 N -0.407 5.407 6 C 0.298 3.702 7 O -0.371 6.371 8 C -0.157 4.157 9 C 0.052 3.948 10 H 0.069 0.931 11 C -0.605 4.605 12 H 0.063 0.937 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.892 3.108 16 H -0.209 1.209 17 H -0.218 1.218 18 H -0.215 1.215 19 C -0.031 4.031 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.172 4.172 23 C -0.143 4.143 24 C -0.148 4.148 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.979 0.284 -10.442 12.563 hybrid contribution -0.214 0.831 -1.837 2.028 sum -7.193 1.114 -12.280 14.275 Atomic orbital electron populations 1.23860 0.95907 1.01874 1.01413 1.22832 0.95988 0.98258 0.99605 1.20961 0.98349 0.96111 0.98805 1.21123 0.93813 0.87075 0.97836 1.46191 1.42997 1.19491 1.32019 1.20868 0.79287 0.89710 0.80290 1.90750 1.63972 1.47318 1.35049 1.21684 0.99237 0.94224 1.00592 1.17870 0.92480 0.91221 0.93186 0.93095 1.21521 1.03505 1.40523 0.94936 0.93704 1.25579 0.96740 0.93106 1.01921 1.70758 1.08190 1.45012 1.30173 0.83649 0.75281 0.76167 0.75743 1.20937 1.21757 1.21530 1.20827 0.93952 0.96791 0.91506 1.20917 0.99696 0.91945 1.00083 1.21012 0.94056 0.97964 1.01741 1.20824 0.95018 0.96737 1.04575 1.20964 0.98771 0.92985 1.01536 1.21068 0.94191 0.97779 1.01808 0.88450 0.88580 0.87091 0.90997 0.90498 0.91948 0.91802 0.77482 0.90310 0.91700 0.91886 0.86748 0.87458 0.87592 0.87466 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.67 14.32 29.01 0.42 -1.25 16 2 C -0.15 -1.40 9.52 -36.03 -0.34 -1.74 16 3 C -0.10 -1.02 5.77 -27.88 -0.16 -1.18 16 4 C 0.13 1.72 5.66 -4.04 -0.02 1.69 16 5 N -0.75 -11.20 5.56 -60.29 -0.33 -11.53 16 6 C 0.51 10.35 7.58 -10.99 -0.08 10.26 16 7 O -0.50 -12.75 15.02 5.55 0.08 -12.66 16 8 C -0.12 -2.28 4.94 -27.88 -0.14 -2.42 16 9 C 0.07 1.73 1.31 -92.92 -0.12 1.61 16 10 H 0.05 1.39 6.23 -51.93 -0.32 1.06 16 11 C -0.57 -15.58 6.40 -34.44 -0.22 -15.80 16 12 H 0.04 1.24 7.82 -52.49 -0.41 0.82 16 13 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 14 N -0.91 -27.93 13.63 55.43 0.76 -27.17 16 15 Si 1.06 26.59 29.91 -169.99 -5.08 21.50 16 16 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 C -0.03 -0.67 4.77 -104.62 -0.50 -1.17 16 20 C -0.11 -2.22 8.88 -39.59 -0.35 -2.57 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 22 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 23 C -0.12 -2.30 10.05 -39.59 -0.40 -2.70 16 24 C -0.13 -2.75 9.67 -39.59 -0.38 -3.13 16 25 H 0.10 0.73 8.06 -52.49 -0.42 0.30 16 26 H 0.10 0.77 7.84 -52.48 -0.41 0.36 16 27 H 0.11 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.39 4.48 8.47 -40.82 -0.35 4.13 16 33 H 0.08 1.43 7.87 -51.93 -0.41 1.02 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.27 8.22 6.68 -40.82 -0.27 7.95 16 36 H 0.11 2.29 7.80 -52.48 -0.41 1.88 16 37 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -33.63 341.16 -8.64 -42.27 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.01 Total: 5.84 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -3.20 Total: -23.38 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.42 Total: -38.71 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -5.08 Total: 21.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.63 -8.64 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597972267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.728 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds