Wall clock time and date at job start Mon Mar 30 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00004 * 2 1 4 4 C 1.53005 * 109.46871 * 124.99884 * 3 2 1 5 5 N 1.46506 * 109.46773 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99707 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99804 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47066 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47486 * 54.05268 * 9 8 6 11 11 C 1.50698 * 109.46901 * 294.05498 * 9 8 6 12 12 H 1.08002 * 120.00397 * 330.08136 * 11 9 8 13 13 C 1.37877 * 119.99983 * 150.08139 * 11 9 8 14 14 N 1.31513 * 120.00147 * 6.55933 * 13 11 9 15 15 Si 1.86806 * 120.00054 * 186.55449 * 13 11 9 16 16 H 1.48501 * 109.47229 * 179.97438 * 15 13 11 17 17 H 1.48498 * 109.47340 * 300.00345 * 15 13 11 18 18 H 1.48505 * 109.46728 * 60.00313 * 15 13 11 19 19 C 1.50704 * 109.47322 * 174.05774 * 9 8 6 20 20 C 1.38232 * 120.00156 * 64.30019 * 19 9 8 21 21 C 1.38227 * 120.00423 * 179.81276 * 20 19 9 22 22 C 1.38243 * 119.99751 * 0.39675 * 21 20 19 23 23 C 1.38236 * 119.99618 * 359.85625 * 22 21 20 24 24 C 1.38229 * 120.00074 * 359.95579 * 23 22 21 25 25 H 1.08000 * 119.99783 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99856 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.00077 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47426 * 4.99951 * 3 2 1 29 29 H 1.09003 * 109.47451 * 244.99769 * 3 2 1 30 30 H 1.08999 * 109.47178 * 60.00604 * 4 3 2 31 31 H 1.08992 * 109.47341 * 299.99788 * 4 3 2 32 32 H 0.97001 * 120.00254 * 0.02562 * 5 4 3 33 33 H 1.08997 * 109.47426 * 60.00323 * 8 6 5 34 34 H 1.09004 * 109.47237 * 299.99638 * 8 6 5 35 35 H 0.96997 * 119.99910 * 354.72326 * 14 13 11 36 36 H 1.08007 * 119.99790 * 359.97438 * 20 19 9 37 37 H 1.08004 * 120.00499 * 180.23296 * 21 20 19 38 38 H 1.08002 * 119.99679 * 179.83680 * 22 21 20 39 39 H 1.07995 * 119.99385 * 179.97438 * 23 22 21 40 40 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 7 3.7671 2.6020 1.1820 6 6 4.6833 2.8511 2.1385 7 8 4.9021 2.0245 2.9987 8 6 5.4368 4.1562 2.1386 9 6 6.4082 4.1842 3.3203 10 1 7.0447 3.3000 3.2886 11 6 5.6295 4.1966 4.6104 12 1 4.6518 4.6541 4.6468 13 6 6.1652 3.6239 5.7445 14 7 7.4040 3.1825 5.7359 15 14 5.1313 3.4750 7.2932 16 1 5.9326 2.8279 8.3630 17 1 4.7099 4.8274 7.7390 18 1 3.9293 2.6507 7.0085 19 6 7.2638 5.4222 3.2381 20 6 6.6837 6.6719 3.3499 21 6 7.4689 7.8073 3.2784 22 6 8.8332 7.6932 3.0868 23 6 9.4125 6.4435 2.9698 24 6 8.6278 5.3081 3.0452 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6214 1.4026 -0.9314 30 1 3.7400 0.5065 1.0921 31 1 2.4773 1.2355 2.1130 32 1 3.5919 3.2633 0.4943 33 1 4.7319 4.9828 2.2276 34 1 5.9951 4.2535 1.2074 35 1 7.9156 3.1895 4.9119 36 1 5.6173 6.7612 3.4958 37 1 7.0162 8.7836 3.3695 38 1 9.4463 8.5804 3.0283 39 1 10.4783 6.3544 2.8197 40 1 9.0805 4.3318 2.9542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597972267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:02 Heat of formation + Delta-G solvation = -30.120854 kcal Electronic energy + Delta-G solvation = -20365.500853 eV Core-core repulsion = 17337.032424 eV Total energy + Delta-G solvation = -3028.468428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78819 -39.82410 -37.19468 -36.04916 -34.66106 -33.27685 -31.60709 -30.92513 -29.57074 -26.93965 -24.92040 -23.70476 -23.16624 -21.89526 -21.32138 -20.46136 -18.81323 -17.96351 -17.25909 -16.90896 -16.71624 -16.21718 -15.67082 -15.64074 -15.63716 -15.00281 -14.67696 -14.45157 -14.05107 -14.00446 -13.73549 -13.43631 -13.19587 -13.04320 -12.72321 -12.60166 -12.20627 -12.08621 -12.01566 -11.94675 -11.71531 -11.47879 -10.76706 -10.62413 -10.34936 -10.23654 -9.98871 -9.63934 -9.26845 -8.45203 -6.10833 0.68050 0.74275 1.35723 1.46945 1.58367 1.73192 1.88869 2.38457 2.60874 3.10907 3.38622 3.94448 4.00155 4.13358 4.17049 4.20478 4.28813 4.30769 4.42721 4.44830 4.49742 4.61068 4.64865 4.83238 4.87020 4.91814 5.01917 5.08090 5.16271 5.23829 5.41295 5.42949 5.57760 5.73793 5.74863 5.82811 5.85187 5.94576 6.24380 6.30889 6.39574 6.72932 6.78796 7.52517 7.64997 8.95188 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.004981 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.733294 B = 5620.121247 C = 6861.368595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.168 4.168 3 C -0.090 4.090 4 C 0.125 3.875 5 N -0.727 5.727 6 C 0.508 3.492 7 O -0.564 6.564 8 C -0.111 4.111 9 C 0.072 3.928 10 H 0.006 0.994 11 C -0.557 4.557 12 H 0.039 0.961 13 C -0.026 4.026 14 N -0.942 5.942 15 Si 1.098 2.902 16 H -0.288 1.288 17 H -0.266 1.266 18 H -0.286 1.286 19 C -0.054 4.054 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.145 4.145 23 C -0.125 4.125 24 C -0.154 4.154 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.414 0.586 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.257 0.743 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.135 0.865 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.291 3.964 -14.258 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C -0.128 4.128 4 C 0.001 3.999 5 N -0.382 5.382 6 C 0.296 3.704 7 O -0.441 6.441 8 C -0.151 4.151 9 C 0.053 3.947 10 H 0.024 0.976 11 C -0.595 4.595 12 H 0.058 0.942 13 C -0.224 4.224 14 N -0.581 5.581 15 Si 0.923 3.077 16 H -0.214 1.214 17 H -0.191 1.191 18 H -0.213 1.213 19 C -0.055 4.055 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.172 4.172 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.250 0.750 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.153 0.847 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.095 2.894 -12.052 14.804 hybrid contribution 0.096 0.075 -1.497 1.502 sum -7.999 2.969 -13.549 16.011 Atomic orbital electron populations 1.24065 0.95672 1.02875 0.99626 1.22877 0.96457 0.98136 1.01194 1.20860 0.97637 0.96913 0.97356 1.21209 0.93960 0.85830 0.98919 1.45929 1.41058 1.20384 1.30849 1.21055 0.79766 0.89276 0.80320 1.90730 1.66215 1.49183 1.37964 1.21584 0.98946 0.94544 1.00033 1.17709 0.92707 0.90648 0.93660 0.97550 1.21797 1.03105 1.38525 0.96066 0.94240 1.26748 0.97111 0.93372 1.05184 1.70850 1.09423 1.48121 1.29698 0.83178 0.74077 0.77302 0.73131 1.21427 1.19124 1.21256 1.20605 0.94231 0.96578 0.94063 1.21008 1.00138 0.92063 1.00917 1.21413 0.94342 0.98578 0.99861 1.21313 0.95236 0.97556 1.02146 1.21297 1.00025 0.92573 1.00410 1.21127 0.94295 0.98415 1.03375 0.87333 0.87774 0.87056 0.89729 0.88847 0.93227 0.93933 0.74952 0.88429 0.88850 0.93216 0.86750 0.83887 0.83534 0.84741 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.32 67.78 0.97 -1.85 16 2 C -0.17 -2.93 9.52 25.64 0.24 -2.68 16 3 C -0.09 -1.59 5.77 29.85 0.17 -1.42 16 4 C 0.12 3.39 5.66 86.38 0.49 3.88 16 5 N -0.73 -21.15 5.56 -463.05 -2.57 -23.72 16 6 C 0.51 20.94 7.58 87.66 0.66 21.61 16 7 O -0.56 -30.27 15.02 -3.04 -0.05 -30.32 16 8 C -0.11 -4.34 4.94 29.85 0.15 -4.19 16 9 C 0.07 3.60 1.31 -12.29 -0.02 3.59 16 10 H 0.01 0.37 6.23 -2.39 -0.01 0.35 16 11 C -0.56 -31.50 6.40 25.60 0.16 -31.34 16 12 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 13 C -0.03 -1.56 5.45 84.65 0.46 -1.10 16 14 N -0.94 -60.99 13.63 21.45 0.29 -60.70 16 15 Si 1.10 54.85 29.91 68.60 2.05 56.90 16 16 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 19 C -0.05 -2.44 4.77 -19.87 -0.09 -2.54 16 20 C -0.12 -4.88 8.88 22.27 0.20 -4.68 16 21 C -0.12 -4.05 10.05 22.27 0.22 -3.83 16 22 C -0.14 -4.48 10.05 22.27 0.22 -4.25 16 23 C -0.13 -4.37 10.05 22.27 0.22 -4.15 16 24 C -0.15 -6.58 9.67 22.27 0.22 -6.37 16 25 H 0.11 1.40 8.06 -2.91 -0.02 1.37 16 26 H 0.10 1.41 7.84 -2.91 -0.02 1.38 16 27 H 0.11 1.90 8.06 -2.91 -0.02 1.87 16 28 H 0.08 1.30 7.79 -2.39 -0.02 1.29 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.41 8.52 8.47 -92.71 -0.79 7.73 16 33 H 0.10 3.43 7.87 -2.39 -0.02 3.41 16 34 H 0.09 3.08 8.14 -2.38 -0.02 3.07 16 35 H 0.26 16.76 6.68 -92.71 -0.62 16.14 16 36 H 0.11 4.42 7.80 -2.91 -0.02 4.40 16 37 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.09 4.20 7.95 -2.91 -0.02 4.17 16 Total: -1.00 -77.65 341.16 4.39 -73.26 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.38 Total: 23.92 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 4.29 Total: -39.33 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.28 Total: -84.42 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.32 kcal Atomic # 14 Polarization: 54.85 SS G_CDS: 2.05 Total: 56.90 kcal Total: -77.65 4.39 -73.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597972267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.140 kcal (2) G-P(sol) polarization free energy of solvation -77.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds