Wall clock time and date at job start Mon Mar 30 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 H 1.09000 * 109.46729 * 55.00101 * 3 2 1 5 5 N 1.46500 * 109.46938 * 295.00246 * 3 2 1 6 6 C 1.34780 * 119.99785 * 85.00151 * 5 3 2 7 7 O 1.21583 * 120.00451 * 359.97438 * 6 5 3 8 8 C 1.47647 * 119.99563 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89369 * 359.72423 * 8 6 5 10 10 C 1.36315 * 120.09906 * 179.75719 * 9 8 6 11 11 C 1.40886 * 119.89820 * 0.51926 * 10 9 8 12 12 C 1.41109 * 120.10515 * 179.71739 * 11 10 9 13 13 H 1.08003 * 119.99416 * 204.64929 * 12 11 10 14 14 C 1.40221 * 120.00090 * 24.65303 * 12 11 10 15 15 N 1.30642 * 120.00294 * 17.85925 * 14 12 11 16 16 Si 1.86805 * 119.99714 * 197.86675 * 14 12 11 17 17 H 1.48498 * 109.47272 * 89.99680 * 16 14 12 18 18 H 1.48506 * 109.46713 * 209.99595 * 16 14 12 19 19 H 1.48495 * 109.47018 * 329.99498 * 16 14 12 20 20 C 1.40890 * 119.78760 * 359.73458 * 11 10 9 21 21 C 1.36308 * 119.89275 * 0.02562 * 20 11 10 22 22 C 1.52996 * 109.46899 * 175.00216 * 3 2 1 23 23 C 1.53005 * 117.49778 * 248.74597 * 22 3 2 24 24 C 1.53002 * 117.49420 * 180.08958 * 22 3 2 25 25 H 1.08992 * 109.47192 * 59.99672 * 1 2 3 26 26 H 1.09003 * 109.47129 * 299.99596 * 1 2 3 27 27 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47663 * 120.00106 * 2 1 3 29 29 H 1.09003 * 109.47129 * 240.00404 * 2 1 3 30 30 H 0.96997 * 119.99629 * 264.99134 * 5 3 2 31 31 H 1.07994 * 119.94626 * 0.02562 * 9 8 6 32 32 H 1.08008 * 120.04952 * 180.23180 * 10 9 8 33 33 H 0.97006 * 120.00241 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.04938 * 179.97438 * 20 11 10 35 35 H 1.08014 * 119.94501 * 179.97438 * 21 20 11 36 36 H 1.08992 * 115.55489 * 34.41972 * 22 3 2 37 37 H 1.09005 * 117.49562 * 0.02562 * 23 22 3 38 38 H 1.08993 * 117.49944 * 145.02014 * 23 22 3 39 39 H 1.09000 * 117.49311 * 214.97315 * 24 22 3 40 40 H 1.08991 * 117.50428 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3668 7 8 -0.3416 2.6319 -0.4319 8 6 0.0446 3.3250 -2.6283 9 6 0.9429 3.3662 -3.7015 10 6 0.5850 3.9706 -4.8697 11 6 -0.6870 4.5640 -4.9924 12 6 -1.0598 5.1961 -6.1977 13 1 -1.8148 5.9683 -6.1913 14 6 -0.4501 4.8214 -7.4036 15 7 0.1870 3.6840 -7.4878 16 14 -0.5487 5.9490 -8.8897 17 1 0.6078 6.8804 -8.8821 18 1 -0.5205 5.1348 -10.1314 19 1 -1.8120 6.7278 -8.8371 20 6 -1.5853 4.5245 -3.9078 21 6 -1.2203 3.9136 -2.7453 22 6 3.5648 1.4444 0.1257 23 6 4.1656 1.9737 1.4295 24 6 4.2702 2.8019 0.1464 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.2719 2.1233 -1.9977 31 1 1.9191 2.9147 -3.6050 32 1 1.2771 3.9987 -5.6983 33 1 0.6091 3.4251 -8.3219 34 1 -2.5613 4.9784 -3.9972 35 1 -1.9082 3.8832 -1.9131 36 1 4.0781 0.6180 -0.3659 37 1 3.4744 2.3203 2.1978 38 1 5.0742 1.4957 1.7955 39 1 5.2478 2.8683 -0.3312 40 1 3.6482 3.6936 0.0701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598231822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:03 Heat of formation + Delta-G solvation = -12.564953 kcal Electronic energy + Delta-G solvation = -20552.888312 eV Core-core repulsion = 17525.181165 eV Total energy + Delta-G solvation = -3027.707147 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -39.57059 -37.78983 -36.82678 -34.21193 -33.85232 -32.01971 -29.97842 -29.42721 -26.94951 -25.53323 -22.57949 -22.02954 -21.46789 -21.00712 -20.24052 -19.47997 -17.51576 -16.84840 -16.10332 -15.52910 -15.12906 -14.60034 -14.39352 -13.98542 -13.87186 -13.19154 -12.96488 -12.66044 -12.60293 -12.10612 -12.03482 -11.89800 -11.62030 -11.36505 -11.29616 -11.27071 -11.00163 -10.84634 -10.67322 -10.55355 -10.41453 -10.16407 -10.01065 -9.54651 -9.34418 -8.86598 -8.45325 -7.70791 -7.52888 -7.02713 -4.59423 2.25635 2.92290 2.96067 2.98375 3.04727 3.49855 3.74493 3.89929 4.12047 4.52659 4.58030 4.85711 4.97789 5.18504 5.35166 5.43268 5.55869 5.59038 5.60849 5.85047 5.87642 5.98214 6.06667 6.08372 6.15657 6.21949 6.25290 6.33087 6.48081 6.76366 6.78739 6.83810 7.00786 7.12668 7.15187 7.44819 7.67701 7.81408 7.87226 8.08400 8.31920 8.41108 8.64242 8.76545 9.14777 9.89345 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.004032 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.103868 B = 6942.201529 C = 7395.730657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.178 3.822 4 H 0.083 0.917 5 N -0.733 5.733 6 C 0.572 3.428 7 O -0.571 6.571 8 C -0.284 4.284 9 C -0.063 4.063 10 C -0.179 4.179 11 C 0.128 3.872 12 C -0.444 4.444 13 H 0.084 0.916 14 C 0.075 3.925 15 N -0.772 5.772 16 Si 0.913 3.087 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.239 4.239 21 C -0.023 4.023 22 C -0.165 4.165 23 C -0.172 4.172 24 C -0.173 4.173 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.396 0.604 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.286 0.714 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.657 -3.796 7.272 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.072 3.928 4 H 0.101 0.899 5 N -0.386 5.386 6 C 0.367 3.633 7 O -0.453 6.453 8 C -0.288 4.288 9 C -0.082 4.082 10 C -0.198 4.198 11 C 0.125 3.875 12 C -0.472 4.472 13 H 0.103 0.897 14 C -0.146 4.146 15 N -0.396 5.396 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.259 4.259 21 C -0.042 4.042 22 C -0.184 4.184 23 C -0.210 4.210 24 C -0.210 4.210 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.226 -3.988 7.764 11.331 hybrid contribution 0.400 0.295 -1.181 1.281 sum 7.626 -3.693 6.583 10.730 Atomic orbital electron populations 1.21800 0.94753 0.99999 1.03648 1.21906 0.97195 0.96133 1.01429 1.20407 0.90486 0.93285 0.88574 0.89910 1.45952 1.17524 1.59349 1.15732 1.18512 0.80239 0.76517 0.88013 1.90634 1.51700 1.61644 1.41349 1.18937 0.98721 1.16637 0.94507 1.20480 0.96391 0.97868 0.93445 1.20972 0.97300 1.04744 0.96763 1.17783 0.90292 0.87521 0.91883 1.19853 1.18626 1.17554 0.91177 0.89744 1.26086 0.92804 0.94595 1.01138 1.69745 1.23774 1.17759 1.28290 0.86216 0.80266 0.80582 0.79246 1.18945 1.20030 1.18287 1.20714 0.99521 1.10112 0.95528 1.20358 0.93963 0.93739 0.96137 1.22582 0.94956 0.98386 1.02484 1.22969 1.02696 1.04097 0.91227 1.22922 1.01892 0.95063 1.01093 0.91644 0.92450 0.94176 0.91833 0.92174 0.76873 0.89362 0.86269 0.90267 0.88471 0.88157 0.87535 0.88701 0.88798 0.88781 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.51 37.16 0.32 -1.96 16 2 C -0.13 -1.71 5.59 -26.73 -0.15 -1.86 16 3 C 0.18 2.50 2.45 -67.93 -0.17 2.33 16 4 H 0.08 1.32 7.33 -51.93 -0.38 0.94 16 5 N -0.73 -12.08 4.86 -54.81 -0.27 -12.34 16 6 C 0.57 11.82 6.33 -12.42 -0.08 11.75 16 7 O -0.57 -12.94 13.45 5.29 0.07 -12.87 16 8 C -0.28 -6.42 5.89 -104.73 -0.62 -7.04 16 9 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 10 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 11 C 0.13 3.27 5.58 -106.80 -0.60 2.68 16 12 C -0.44 -11.08 9.04 -37.75 -0.34 -11.42 16 13 H 0.08 2.02 7.91 -52.48 -0.42 1.60 16 14 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 15 N -0.77 -18.52 10.95 55.56 0.61 -17.91 16 16 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 17 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 18 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 21 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 22 C -0.17 -1.84 5.22 -90.62 -0.47 -2.32 16 23 C -0.17 -1.70 10.18 -26.69 -0.27 -1.97 16 24 C -0.17 -1.88 10.13 -26.69 -0.27 -2.15 16 25 H 0.06 1.24 5.64 -51.93 -0.29 0.94 16 26 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.40 6.03 6.60 -40.82 -0.27 5.76 16 31 H 0.09 1.66 6.37 -52.49 -0.33 1.33 16 32 H 0.12 2.96 6.16 -52.48 -0.32 2.64 16 33 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 34 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 35 H 0.10 2.28 7.63 -52.48 -0.40 1.88 16 36 H 0.11 1.07 8.11 -51.93 -0.42 0.65 16 37 H 0.09 0.95 8.05 -51.93 -0.42 0.54 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 328.46 15.07 4.95 4.95 Total: -1.00 -27.03 328.46 -9.63 -36.67 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -5.76 Total: 13.12 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -4.21 Total: -23.87 kcal Atomic # 7 Polarization: -30.60 SS G_CDS: 0.34 Total: -30.25 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.07 Total: -12.87 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.03 -9.63 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598231822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.100 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds