Wall clock time and date at job start Mon Mar 30 2020 02:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47022 * 2 1 4 4 H 1.09000 * 109.46729 * 55.00101 * 3 2 1 5 5 N 1.46500 * 109.46938 * 295.00246 * 3 2 1 6 6 C 1.34780 * 119.99785 * 85.00151 * 5 3 2 7 7 O 1.21583 * 120.00451 * 359.97438 * 6 5 3 8 8 C 1.47647 * 119.99563 * 179.97438 * 6 5 3 9 9 C 1.40015 * 119.89369 * 359.72423 * 8 6 5 10 10 C 1.36315 * 120.09906 * 179.75719 * 9 8 6 11 11 C 1.40886 * 119.89820 * 0.51926 * 10 9 8 12 12 C 1.41109 * 120.10515 * 179.71739 * 11 10 9 13 13 H 1.08003 * 119.99416 * 204.64929 * 12 11 10 14 14 C 1.40221 * 120.00090 * 24.65303 * 12 11 10 15 15 N 1.30642 * 120.00294 * 17.85925 * 14 12 11 16 16 Si 1.86805 * 119.99714 * 197.86675 * 14 12 11 17 17 H 1.48498 * 109.47272 * 89.99680 * 16 14 12 18 18 H 1.48506 * 109.46713 * 209.99595 * 16 14 12 19 19 H 1.48495 * 109.47018 * 329.99498 * 16 14 12 20 20 C 1.40890 * 119.78760 * 359.73458 * 11 10 9 21 21 C 1.36308 * 119.89275 * 0.02562 * 20 11 10 22 22 C 1.52996 * 109.46899 * 175.00216 * 3 2 1 23 23 C 1.53005 * 117.49778 * 248.74597 * 22 3 2 24 24 C 1.53002 * 117.49420 * 180.08958 * 22 3 2 25 25 H 1.08992 * 109.47192 * 59.99672 * 1 2 3 26 26 H 1.09003 * 109.47129 * 299.99596 * 1 2 3 27 27 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47663 * 120.00106 * 2 1 3 29 29 H 1.09003 * 109.47129 * 240.00404 * 2 1 3 30 30 H 0.96997 * 119.99629 * 264.99134 * 5 3 2 31 31 H 1.07994 * 119.94626 * 0.02562 * 9 8 6 32 32 H 1.08008 * 120.04952 * 180.23180 * 10 9 8 33 33 H 0.97006 * 120.00241 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.04938 * 179.97438 * 20 11 10 35 35 H 1.08014 * 119.94501 * 179.97438 * 21 20 11 36 36 H 1.08992 * 115.55489 * 34.41972 * 22 3 2 37 37 H 1.09005 * 117.49562 * 0.02562 * 23 22 3 38 38 H 1.08993 * 117.49944 * 145.02014 * 23 22 3 39 39 H 1.09000 * 117.49311 * 214.97315 * 24 22 3 40 40 H 1.08991 * 117.50428 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3668 7 8 -0.3416 2.6319 -0.4319 8 6 0.0446 3.3250 -2.6283 9 6 0.9429 3.3662 -3.7015 10 6 0.5850 3.9706 -4.8697 11 6 -0.6870 4.5640 -4.9924 12 6 -1.0598 5.1961 -6.1977 13 1 -1.8148 5.9683 -6.1913 14 6 -0.4501 4.8214 -7.4036 15 7 0.1870 3.6840 -7.4878 16 14 -0.5487 5.9490 -8.8897 17 1 0.6078 6.8804 -8.8821 18 1 -0.5205 5.1348 -10.1314 19 1 -1.8120 6.7278 -8.8371 20 6 -1.5853 4.5245 -3.9078 21 6 -1.2203 3.9136 -2.7453 22 6 3.5648 1.4444 0.1257 23 6 4.1656 1.9737 1.4295 24 6 4.2702 2.8019 0.1464 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.2719 2.1233 -1.9977 31 1 1.9191 2.9147 -3.6050 32 1 1.2771 3.9987 -5.6983 33 1 0.6091 3.4251 -8.3219 34 1 -2.5613 4.9784 -3.9972 35 1 -1.9082 3.8832 -1.9131 36 1 4.0781 0.6180 -0.3659 37 1 3.4744 2.3203 2.1978 38 1 5.0742 1.4957 1.7955 39 1 5.2478 2.8683 -0.3312 40 1 3.6482 3.6936 0.0701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598231822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:59 Heat of formation + Delta-G solvation = -25.719101 kcal Electronic energy + Delta-G solvation = -20553.458719 eV Core-core repulsion = 17525.181165 eV Total energy + Delta-G solvation = -3028.277554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -41.05737 -39.28242 -38.27413 -35.67112 -35.42739 -33.44571 -31.71511 -31.28257 -28.36808 -27.14423 -23.91727 -23.17569 -22.81770 -22.57827 -21.42165 -21.09097 -19.35608 -18.35354 -17.47021 -17.13295 -16.44134 -15.89449 -15.73936 -15.54517 -15.30174 -14.93858 -14.53700 -14.18619 -13.89501 -13.80392 -13.57824 -13.26228 -13.08930 -12.86237 -12.64610 -12.49436 -12.36908 -12.35633 -11.98394 -11.76918 -11.72664 -11.36495 -11.31604 -11.11658 -11.08312 -10.51900 -9.88731 -9.56359 -9.38981 -8.78632 -6.47739 0.47472 1.15344 1.39005 1.43947 1.53195 2.15598 2.20020 2.32580 2.81258 3.07417 3.56028 3.70201 3.95716 4.12205 4.18412 4.23517 4.32265 4.33822 4.40623 4.45349 4.56599 4.80977 4.85081 4.92934 4.96869 5.02972 5.03836 5.05251 5.16993 5.17891 5.28004 5.30870 5.35691 5.48508 5.59010 5.73349 5.84622 5.96414 6.00316 6.23747 6.54809 6.77682 6.80444 6.90426 7.54762 8.16730 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.026708 B = 0.004032 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.103868 B = 6942.201529 C = 7395.730657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.175 3.825 4 H 0.061 0.939 5 N -0.717 5.717 6 C 0.573 3.427 7 O -0.595 6.595 8 C -0.292 4.292 9 C -0.054 4.054 10 C -0.198 4.198 11 C 0.101 3.899 12 C -0.477 4.477 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.799 5.799 16 Si 0.987 3.013 17 H -0.258 1.258 18 H -0.265 1.265 19 H -0.258 1.258 20 C -0.254 4.254 21 C -0.034 4.034 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.179 4.179 25 H 0.029 0.971 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.404 0.596 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.297 0.703 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 -4.676 7.185 13.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C 0.071 3.929 4 H 0.080 0.920 5 N -0.368 5.368 6 C 0.367 3.633 7 O -0.479 6.479 8 C -0.296 4.296 9 C -0.073 4.073 10 C -0.217 4.217 11 C 0.098 3.902 12 C -0.504 4.504 13 H 0.102 0.898 14 C -0.180 4.180 15 N -0.423 5.423 16 Si 0.807 3.193 17 H -0.183 1.183 18 H -0.189 1.189 19 H -0.182 1.182 20 C -0.274 4.274 21 C -0.053 4.053 22 C -0.185 4.185 23 C -0.196 4.196 24 C -0.217 4.217 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.241 0.759 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.145 0.855 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.374 -4.891 7.695 13.077 hybrid contribution -0.258 0.504 -1.042 1.186 sum 9.116 -4.387 6.652 12.108 Atomic orbital electron populations 1.21741 0.96788 1.00327 1.01103 1.21890 0.95199 0.95733 1.03264 1.20567 0.92791 0.93225 0.86350 0.92048 1.45836 1.15992 1.58014 1.17000 1.18256 0.81375 0.76757 0.86948 1.90621 1.52793 1.62658 1.41847 1.19264 0.98460 1.16174 0.95695 1.20724 0.97582 0.96706 0.92271 1.21008 0.97082 1.06104 0.97517 1.18126 0.91082 0.88379 0.92610 1.20107 1.19885 1.18300 0.92129 0.89827 1.26902 0.91870 0.95727 1.03480 1.69763 1.23912 1.18889 1.29701 0.85115 0.80246 0.78415 0.75514 1.18291 1.18884 1.18204 1.20847 0.99871 1.10813 0.95824 1.20502 0.94778 0.94056 0.96009 1.22514 0.92573 0.99250 1.04123 1.23062 1.03185 1.02900 0.90439 1.22938 1.02275 0.94042 1.02398 0.95193 0.93927 0.92408 0.89043 0.91130 0.75927 0.86007 0.86899 0.89208 0.88008 0.88055 0.85474 0.89265 0.86320 0.87049 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.51 71.98 0.61 -3.77 16 2 C -0.12 -2.99 5.59 30.60 0.17 -2.81 16 3 C 0.17 4.63 2.45 44.99 0.11 4.74 16 4 H 0.06 1.92 7.33 -2.39 -0.02 1.90 16 5 N -0.72 -22.85 4.86 -445.58 -2.17 -25.02 16 6 C 0.57 23.79 6.33 86.73 0.55 24.34 16 7 O -0.60 -27.50 13.45 -3.98 -0.05 -27.56 16 8 C -0.29 -13.36 5.89 -19.93 -0.12 -13.48 16 9 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 10 C -0.20 -9.84 8.63 22.47 0.19 -9.65 16 11 C 0.10 5.32 5.58 -21.28 -0.12 5.20 16 12 C -0.48 -24.37 9.04 23.46 0.21 -24.15 16 13 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 14 C 0.04 1.83 5.14 85.35 0.44 2.27 16 15 N -0.80 -38.39 10.95 21.87 0.24 -38.15 16 16 Si 0.99 35.00 29.60 68.60 2.03 37.03 16 17 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 18 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 20 C -0.25 -12.81 9.73 22.47 0.22 -12.59 16 21 C -0.03 -1.67 9.52 22.25 0.21 -1.45 16 22 C -0.17 -3.20 5.22 -10.79 -0.06 -3.25 16 23 C -0.16 -2.64 10.18 30.62 0.31 -2.33 16 24 C -0.18 -3.47 10.13 30.62 0.31 -3.16 16 25 H 0.03 1.12 5.64 -2.39 -0.01 1.11 16 26 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.40 11.54 6.60 -92.71 -0.61 10.92 16 31 H 0.12 4.41 6.37 -2.91 -0.02 4.39 16 32 H 0.11 5.69 6.16 -2.91 -0.02 5.67 16 33 H 0.30 12.64 8.29 -92.70 -0.77 11.87 16 34 H 0.10 4.85 8.06 -2.91 -0.02 4.82 16 35 H 0.10 4.80 7.63 -2.90 -0.02 4.78 16 36 H 0.13 2.00 8.11 -2.39 -0.02 1.98 16 37 H 0.09 1.61 8.05 -2.38 -0.02 1.59 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -60.01 328.46 3.74 -56.27 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: 0.43 Total: 39.70 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 3.26 Total: -42.27 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -1.93 Total: -63.16 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Total: -60.01 3.74 -56.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598231822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.550 kcal (2) G-P(sol) polarization free energy of solvation -60.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds