Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47338 * 2 1 4 4 H 1.09008 * 109.47115 * 304.99947 * 3 2 1 5 5 N 1.46504 * 109.47548 * 64.99700 * 3 2 1 6 6 C 1.34764 * 120.00250 * 253.07913 * 5 3 2 7 7 O 1.21589 * 120.00035 * 359.97438 * 6 5 3 8 8 C 1.47647 * 120.00060 * 179.72148 * 6 5 3 9 9 C 1.40013 * 119.89378 * 0.02562 * 8 6 5 10 10 C 1.36319 * 120.10634 * 179.71671 * 9 8 6 11 11 C 1.40892 * 119.88882 * 0.55956 * 10 9 8 12 12 C 1.41105 * 120.10102 * 179.69811 * 11 10 9 13 13 H 1.07999 * 119.99998 * 207.49272 * 12 11 10 14 14 C 1.40231 * 120.00003 * 27.49531 * 12 11 10 15 15 N 1.30642 * 120.00316 * 10.98156 * 14 12 11 16 16 Si 1.86800 * 119.99858 * 190.98484 * 14 12 11 17 17 H 1.48492 * 109.47288 * 89.99742 * 16 14 12 18 18 H 1.48497 * 109.47139 * 209.99965 * 16 14 12 19 19 H 1.48502 * 109.47113 * 329.99835 * 16 14 12 20 20 C 1.40892 * 119.79568 * 359.71379 * 11 10 9 21 21 C 1.36313 * 119.88967 * 0.02562 * 20 11 10 22 22 C 1.52998 * 109.47415 * 185.00026 * 3 2 1 23 23 C 1.52996 * 117.50288 * 127.19432 * 22 3 2 24 24 C 1.53002 * 117.49900 * 58.53550 * 22 3 2 25 25 H 1.09001 * 109.46996 * 300.00135 * 1 2 3 26 26 H 1.09003 * 109.47074 * 59.99810 * 1 2 3 27 27 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46996 * 239.99865 * 2 1 3 29 29 H 1.09003 * 109.47074 * 120.00190 * 2 1 3 30 30 H 0.97006 * 119.99668 * 73.07820 * 5 3 2 31 31 H 1.08001 * 119.94837 * 359.97438 * 9 8 6 32 32 H 1.07997 * 120.05526 * 180.27857 * 10 9 8 33 33 H 0.96995 * 120.00158 * 180.02562 * 15 14 12 34 34 H 1.07996 * 120.05636 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.94598 * 179.97438 * 21 20 11 36 36 H 1.09000 * 115.55099 * 272.87216 * 22 3 2 37 37 H 1.09006 * 117.49898 * 0.02562 * 23 22 3 38 38 H 1.08999 * 117.50607 * 145.01944 * 23 22 3 39 39 H 1.08999 * 117.49839 * 214.98211 * 24 22 3 40 40 H 1.09003 * 117.49741 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6525 2.0976 1.2518 6 6 0.6721 3.0222 1.2530 7 8 0.1094 3.3131 0.2151 8 6 0.2773 3.6780 2.5156 9 6 0.9234 3.3378 3.7103 10 6 0.5663 3.9447 4.8775 11 6 -0.4627 4.9071 4.8823 12 6 -0.8402 5.5334 6.0891 13 1 -1.8472 5.9034 6.2134 14 6 0.0921 5.6756 7.1268 15 7 1.3561 5.4283 6.9079 16 14 -0.4732 6.2185 8.8224 17 1 -0.8220 5.0246 9.6337 18 1 0.6191 6.9697 9.4915 19 1 -1.6663 7.0927 8.6901 20 6 -1.1138 5.2418 3.6786 21 6 -0.7462 4.6334 2.5155 22 6 3.5648 1.4443 -0.1257 23 6 4.1811 2.2966 -1.2368 24 6 4.1729 0.7707 -1.3576 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1016 1.8657 2.0798 31 1 1.7088 2.5965 3.7064 32 1 1.0683 3.6850 5.7978 33 1 2.0009 5.5263 7.6258 34 1 -1.9034 5.9786 3.6775 35 1 -1.2450 4.8890 1.5923 36 1 4.1140 1.3671 0.8126 37 1 3.5002 2.8564 -1.8781 38 1 5.1358 2.7799 -1.0297 39 1 5.1223 0.2507 -1.2297 40 1 3.4867 0.3258 -2.0782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598231823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = -14.181195 kcal Electronic energy + Delta-G solvation = -20411.222150 eV Core-core repulsion = 17383.444918 eV Total energy + Delta-G solvation = -3027.777233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -39.49963 -37.85316 -36.84378 -34.34926 -33.83167 -31.98447 -30.03024 -29.42594 -26.97573 -25.45401 -22.77746 -21.96685 -21.64712 -20.98879 -20.15559 -19.52430 -17.51428 -16.76073 -16.34515 -15.47321 -14.97235 -14.62123 -14.11675 -14.02520 -13.90975 -13.30078 -13.10115 -12.83626 -12.65287 -12.35974 -12.02281 -11.86984 -11.60240 -11.43203 -11.36593 -11.27568 -10.95788 -10.92498 -10.71542 -10.61848 -10.50148 -10.01287 -9.97526 -9.53316 -9.41052 -8.92318 -8.52924 -7.71273 -7.49208 -6.96322 -4.60853 2.23643 2.93452 2.96228 2.99393 3.03843 3.61329 3.75896 3.89005 3.94340 4.57802 4.64791 4.87773 4.97996 5.20412 5.28061 5.36266 5.51397 5.56661 5.58006 5.80199 5.84391 5.99603 6.03666 6.04647 6.06239 6.09423 6.14235 6.32520 6.40161 6.51136 6.77902 6.85075 6.99198 7.10893 7.15685 7.45547 7.66262 7.81312 7.87450 8.09061 8.27957 8.42426 8.65315 8.76319 9.11302 9.94327 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.003817 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.894973 B = 7334.017803 C = 7680.489575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.171 3.829 4 H 0.096 0.904 5 N -0.732 5.732 6 C 0.574 3.426 7 O -0.575 6.575 8 C -0.279 4.279 9 C -0.065 4.065 10 C -0.173 4.173 11 C 0.128 3.872 12 C -0.445 4.445 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.781 5.781 16 Si 0.916 3.084 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.260 1.260 20 C -0.236 4.236 21 C -0.025 4.025 22 C -0.161 4.161 23 C -0.176 4.176 24 C -0.175 4.175 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.396 0.604 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.285 0.715 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -8.138 -6.486 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.065 3.935 4 H 0.114 0.886 5 N -0.383 5.383 6 C 0.369 3.631 7 O -0.457 6.457 8 C -0.284 4.284 9 C -0.084 4.084 10 C -0.193 4.193 11 C 0.125 3.875 12 C -0.473 4.473 13 H 0.101 0.899 14 C -0.148 4.148 15 N -0.405 5.405 16 Si 0.740 3.260 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.184 1.184 20 C -0.255 4.255 21 C -0.044 4.044 22 C -0.180 4.180 23 C -0.213 4.213 24 C -0.213 4.213 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.231 0.769 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.839 -7.914 -7.100 11.682 hybrid contribution 0.267 0.175 1.259 1.299 sum 5.106 -7.739 -5.841 10.958 Atomic orbital electron populations 1.21702 0.95348 1.00707 1.02770 1.21872 0.96554 0.96352 1.01912 1.20455 0.90639 0.93035 0.89346 0.88623 1.45859 1.39656 1.42854 1.09941 1.18556 0.77846 0.77422 0.89261 1.90619 1.55394 1.65315 1.34390 1.18959 1.07834 1.09764 0.91811 1.20506 0.97137 0.97876 0.92926 1.21082 1.02171 0.98804 0.97213 1.17812 0.89625 0.88173 0.91936 1.19843 0.98396 1.31705 0.97344 0.89852 1.26074 0.94320 0.93246 1.01144 1.69709 1.02235 1.34264 1.34303 0.86164 0.79648 0.79618 0.80542 1.19039 1.20030 1.18356 1.20760 1.06598 1.05621 0.92558 1.20370 0.93900 0.93184 0.96994 1.22618 0.95707 1.05434 0.94233 1.23023 1.02657 0.93377 1.02289 1.22934 1.02384 0.95493 1.00468 0.92316 0.92690 0.93330 0.91478 0.91960 0.76895 0.89323 0.85786 0.90382 0.88398 0.88122 0.87682 0.88652 0.88930 0.88879 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.70 37.16 0.36 -1.68 16 2 C -0.13 -1.57 5.51 -26.73 -0.15 -1.71 16 3 C 0.17 2.40 2.52 -67.93 -0.17 2.23 16 4 H 0.10 1.57 6.76 -51.92 -0.35 1.22 16 5 N -0.73 -12.09 4.44 -54.81 -0.24 -12.33 16 6 C 0.57 12.02 7.06 -12.42 -0.09 11.93 16 7 O -0.58 -13.40 15.70 5.29 0.08 -13.32 16 8 C -0.28 -6.35 5.89 -104.72 -0.62 -6.97 16 9 C -0.07 -1.44 9.47 -39.61 -0.38 -1.82 16 10 C -0.17 -4.25 8.61 -39.27 -0.34 -4.59 16 11 C 0.13 3.26 5.57 -106.80 -0.59 2.67 16 12 C -0.44 -11.12 9.06 -37.75 -0.34 -11.46 16 13 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 14 C 0.07 1.69 5.26 -17.31 -0.09 1.60 16 15 N -0.78 -18.81 10.75 55.56 0.60 -18.22 16 16 Si 0.92 17.43 29.58 -169.99 -5.03 12.41 16 17 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 18 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 20 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 21 C -0.03 -0.60 9.52 -39.61 -0.38 -0.97 16 22 C -0.16 -1.89 5.46 -90.62 -0.49 -2.39 16 23 C -0.18 -1.98 10.18 -26.70 -0.27 -2.25 16 24 C -0.18 -1.69 9.66 -26.69 -0.26 -1.95 16 25 H 0.06 0.95 7.23 -51.93 -0.38 0.58 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.70 7.03 -51.93 -0.36 0.34 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 5.95 6.82 -40.82 -0.28 5.67 16 31 H 0.09 1.66 6.37 -52.49 -0.33 1.33 16 32 H 0.12 3.09 6.11 -52.49 -0.32 2.77 16 33 H 0.28 6.19 8.29 -40.82 -0.34 5.86 16 34 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 36 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.14 8.04 -51.93 -0.42 0.72 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.87 7.49 -51.93 -0.39 0.48 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -27.53 331.54 -9.52 -37.05 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -5.74 Total: 12.87 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -4.19 Total: -23.47 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.35 Total: -30.55 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.53 -9.52 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598231823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.874 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds