Wall clock time and date at job start Mon Mar 30 2020 02:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47338 * 2 1 4 4 H 1.09008 * 109.47115 * 304.99947 * 3 2 1 5 5 N 1.46504 * 109.47548 * 64.99700 * 3 2 1 6 6 C 1.34764 * 120.00250 * 253.07913 * 5 3 2 7 7 O 1.21589 * 120.00035 * 359.97438 * 6 5 3 8 8 C 1.47647 * 120.00060 * 179.72148 * 6 5 3 9 9 C 1.40013 * 119.89378 * 0.02562 * 8 6 5 10 10 C 1.36319 * 120.10634 * 179.71671 * 9 8 6 11 11 C 1.40892 * 119.88882 * 0.55956 * 10 9 8 12 12 C 1.41105 * 120.10102 * 179.69811 * 11 10 9 13 13 H 1.07999 * 119.99998 * 207.49272 * 12 11 10 14 14 C 1.40231 * 120.00003 * 27.49531 * 12 11 10 15 15 N 1.30642 * 120.00316 * 10.98156 * 14 12 11 16 16 Si 1.86800 * 119.99858 * 190.98484 * 14 12 11 17 17 H 1.48492 * 109.47288 * 89.99742 * 16 14 12 18 18 H 1.48497 * 109.47139 * 209.99965 * 16 14 12 19 19 H 1.48502 * 109.47113 * 329.99835 * 16 14 12 20 20 C 1.40892 * 119.79568 * 359.71379 * 11 10 9 21 21 C 1.36313 * 119.88967 * 0.02562 * 20 11 10 22 22 C 1.52998 * 109.47415 * 185.00026 * 3 2 1 23 23 C 1.52996 * 117.50288 * 127.19432 * 22 3 2 24 24 C 1.53002 * 117.49900 * 58.53550 * 22 3 2 25 25 H 1.09001 * 109.46996 * 300.00135 * 1 2 3 26 26 H 1.09003 * 109.47074 * 59.99810 * 1 2 3 27 27 H 1.08997 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46996 * 239.99865 * 2 1 3 29 29 H 1.09003 * 109.47074 * 120.00190 * 2 1 3 30 30 H 0.97006 * 119.99668 * 73.07820 * 5 3 2 31 31 H 1.08001 * 119.94837 * 359.97438 * 9 8 6 32 32 H 1.07997 * 120.05526 * 180.27857 * 10 9 8 33 33 H 0.96995 * 120.00158 * 180.02562 * 15 14 12 34 34 H 1.07996 * 120.05636 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.94598 * 179.97438 * 21 20 11 36 36 H 1.09000 * 115.55099 * 272.87216 * 22 3 2 37 37 H 1.09006 * 117.49898 * 0.02562 * 23 22 3 38 38 H 1.08999 * 117.50607 * 145.01944 * 23 22 3 39 39 H 1.08999 * 117.49839 * 214.98211 * 24 22 3 40 40 H 1.09003 * 117.49741 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6525 2.0976 1.2518 6 6 0.6721 3.0222 1.2530 7 8 0.1094 3.3131 0.2151 8 6 0.2773 3.6780 2.5156 9 6 0.9234 3.3378 3.7103 10 6 0.5663 3.9447 4.8775 11 6 -0.4627 4.9071 4.8823 12 6 -0.8402 5.5334 6.0891 13 1 -1.8472 5.9034 6.2134 14 6 0.0921 5.6756 7.1268 15 7 1.3561 5.4283 6.9079 16 14 -0.4732 6.2185 8.8224 17 1 -0.8220 5.0246 9.6337 18 1 0.6191 6.9697 9.4915 19 1 -1.6663 7.0927 8.6901 20 6 -1.1138 5.2418 3.6786 21 6 -0.7462 4.6334 2.5155 22 6 3.5648 1.4443 -0.1257 23 6 4.1811 2.2966 -1.2368 24 6 4.1729 0.7707 -1.3576 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1016 1.8657 2.0798 31 1 1.7088 2.5965 3.7064 32 1 1.0683 3.6850 5.7978 33 1 2.0009 5.5263 7.6258 34 1 -1.9034 5.9786 3.6775 35 1 -1.2450 4.8890 1.5923 36 1 4.1140 1.3671 0.8126 37 1 3.5002 2.8564 -1.8781 38 1 5.1358 2.7799 -1.0297 39 1 5.1223 0.2507 -1.2297 40 1 3.4867 0.3258 -2.0782 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598231823.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:08 Heat of formation + Delta-G solvation = -27.607085 kcal Electronic energy + Delta-G solvation = -20411.804341 eV Core-core repulsion = 17383.444918 eV Total energy + Delta-G solvation = -3028.359423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -41.00224 -39.30496 -38.35527 -35.63759 -35.57653 -33.34365 -31.75865 -31.28388 -28.39967 -27.03576 -23.92118 -23.37881 -22.79491 -22.64556 -21.39651 -21.07383 -19.35686 -18.28479 -17.66809 -17.12119 -16.28367 -15.81406 -15.75746 -15.39730 -15.26872 -14.92160 -14.65675 -14.42207 -13.98701 -13.70085 -13.61610 -13.37566 -13.24744 -12.84706 -12.61955 -12.45137 -12.39383 -12.37475 -12.02225 -11.80099 -11.69802 -11.38765 -11.35044 -11.16931 -10.93847 -10.62011 -9.93873 -9.57065 -9.35571 -8.73015 -6.49693 0.44581 1.14352 1.39877 1.43689 1.53538 2.15265 2.19473 2.37895 2.81355 2.93885 3.64845 3.69413 3.98043 4.11351 4.16740 4.24395 4.29312 4.32283 4.38630 4.44534 4.54452 4.79250 4.83581 4.92640 4.96426 5.01962 5.04024 5.07342 5.13604 5.16727 5.25015 5.29928 5.31891 5.40072 5.59444 5.72634 5.83528 5.96306 6.00055 6.23843 6.55628 6.75694 6.79024 6.89555 7.49865 8.20619 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028862 B = 0.003817 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.894973 B = 7334.017803 C = 7680.489575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.169 3.831 4 H 0.069 0.931 5 N -0.715 5.715 6 C 0.575 3.425 7 O -0.604 6.604 8 C -0.287 4.287 9 C -0.056 4.056 10 C -0.193 4.193 11 C 0.101 3.899 12 C -0.477 4.477 13 H 0.083 0.917 14 C 0.036 3.964 15 N -0.807 5.807 16 Si 0.990 3.010 17 H -0.258 1.258 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.250 4.250 21 C -0.037 4.037 22 C -0.172 4.172 23 C -0.191 4.191 24 C -0.149 4.149 25 H 0.028 0.972 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.406 0.594 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.295 0.705 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.551 -9.712 -6.129 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C 0.064 3.936 4 H 0.087 0.913 5 N -0.366 5.366 6 C 0.369 3.631 7 O -0.488 6.488 8 C -0.292 4.292 9 C -0.075 4.075 10 C -0.212 4.212 11 C 0.097 3.903 12 C -0.505 4.505 13 H 0.101 0.899 14 C -0.182 4.182 15 N -0.431 5.431 16 Si 0.810 3.190 17 H -0.183 1.183 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.269 4.269 21 C -0.056 4.056 22 C -0.191 4.191 23 C -0.228 4.228 24 C -0.186 4.186 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.242 0.758 31 H 0.142 0.858 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.133 0.867 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.420 -9.521 -6.759 13.324 hybrid contribution -0.179 0.625 1.031 1.219 sum 6.241 -8.896 -5.728 12.284 Atomic orbital electron populations 1.21691 0.96763 1.01449 1.00543 1.21852 0.95140 0.95092 1.03862 1.20616 0.92468 0.93580 0.86916 0.91267 1.45739 1.37969 1.41320 1.11546 1.18319 0.78647 0.78106 0.88074 1.90603 1.56687 1.66508 1.35031 1.19271 1.07407 1.09435 0.93073 1.20754 0.97227 0.97720 0.91769 1.21114 1.02730 0.99542 0.97808 1.18159 0.90500 0.88981 0.92617 1.20103 0.99016 1.32998 0.98364 0.89867 1.26901 0.94049 0.92757 1.04502 1.69736 1.03210 1.34324 1.35863 0.85071 0.79230 0.79315 0.75390 1.18289 1.18987 1.18281 1.20894 1.07118 1.06215 0.92686 1.20517 0.94526 0.93747 0.96840 1.22537 0.93808 1.07267 0.95481 1.23075 1.02745 0.94829 1.02128 1.23042 1.03020 0.94146 0.98420 0.95306 0.94137 0.91099 0.88865 0.90509 0.75783 0.85842 0.86446 0.89382 0.87859 0.88028 0.86776 0.90115 0.88063 0.86688 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.70 71.98 0.70 -3.19 16 2 C -0.12 -2.65 5.51 30.59 0.17 -2.48 16 3 C 0.17 4.50 2.52 44.99 0.11 4.62 16 4 H 0.07 2.26 6.76 -2.38 -0.02 2.24 16 5 N -0.71 -22.88 4.44 -445.59 -1.98 -24.86 16 6 C 0.58 24.16 7.06 86.73 0.61 24.77 16 7 O -0.60 -28.69 15.70 -4.00 -0.06 -28.76 16 8 C -0.29 -13.20 5.89 -19.93 -0.12 -13.32 16 9 C -0.06 -2.45 9.47 22.25 0.21 -2.24 16 10 C -0.19 -9.58 8.61 22.47 0.19 -9.38 16 11 C 0.10 5.28 5.57 -21.28 -0.12 5.16 16 12 C -0.48 -24.37 9.06 23.46 0.21 -24.16 16 13 H 0.08 4.09 7.87 -2.91 -0.02 4.06 16 14 C 0.04 1.66 5.26 85.35 0.45 2.11 16 15 N -0.81 -38.91 10.75 21.87 0.24 -38.68 16 16 Si 0.99 35.25 29.58 68.60 2.03 37.28 16 17 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 18 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 20 C -0.25 -12.55 9.73 22.47 0.22 -12.33 16 21 C -0.04 -1.81 9.52 22.25 0.21 -1.59 16 22 C -0.17 -3.62 5.46 -10.79 -0.06 -3.68 16 23 C -0.19 -3.95 10.18 30.62 0.31 -3.63 16 24 C -0.15 -2.37 9.66 30.62 0.30 -2.07 16 25 H 0.03 0.91 7.23 -2.39 -0.02 0.90 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.09 1.60 7.03 -2.39 -0.02 1.58 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.41 11.38 6.82 -92.70 -0.63 10.75 16 31 H 0.12 4.42 6.37 -2.91 -0.02 4.40 16 32 H 0.12 5.93 6.11 -2.91 -0.02 5.92 16 33 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 34 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 36 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.08 1.90 8.04 -2.38 -0.02 1.88 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.50 7.49 -2.39 -0.02 1.48 16 Total: -1.00 -60.93 331.54 4.04 -56.90 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: 0.41 Total: 39.54 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 3.40 Total: -41.43 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -1.74 Total: -63.53 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Total: -60.93 4.04 -56.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598231823.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.290 kcal (2) G-P(sol) polarization free energy of solvation -60.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds