Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 H 1.09000 * 109.46629 * 304.99722 * 3 2 1 5 5 N 1.46504 * 109.47126 * 64.99622 * 3 2 1 6 6 C 1.34772 * 119.99884 * 274.99969 * 5 3 2 7 7 O 1.21550 * 120.00196 * 0.02562 * 6 5 3 8 8 C 1.47885 * 119.99902 * 179.97438 * 6 5 3 9 9 C 1.39925 * 120.02340 * 359.73208 * 8 6 5 10 10 C 1.38334 * 120.35652 * 179.73831 * 9 8 6 11 11 C 1.37754 * 120.41016 * 0.55985 * 10 9 8 12 12 C 1.40753 * 120.04146 * 359.69249 * 11 10 9 13 13 C 1.41436 * 120.17393 * 180.02562 * 12 11 10 14 14 H 1.07991 * 120.00137 * 24.44137 * 13 12 11 15 15 C 1.39932 * 119.99491 * 204.43506 * 13 12 11 16 16 N 1.30834 * 120.00363 * 17.88323 * 15 13 12 17 17 Si 1.86808 * 120.00019 * 197.87928 * 15 13 12 18 18 H 1.48497 * 109.46550 * 60.00360 * 17 15 13 19 19 H 1.48499 * 109.46883 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47071 * 300.00472 * 17 15 13 21 21 C 1.38990 * 120.02718 * 179.97438 * 8 6 5 22 22 C 1.52993 * 109.47144 * 184.99971 * 3 2 1 23 23 C 1.52999 * 117.50198 * 111.25007 * 22 3 2 24 24 C 1.53002 * 117.50049 * 179.91440 * 22 3 2 25 25 H 1.09005 * 109.46704 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47206 * 300.00489 * 1 2 3 27 27 H 1.08997 * 109.46917 * 60.00524 * 1 2 3 28 28 H 1.08997 * 109.47007 * 240.00026 * 2 1 3 29 29 H 1.08997 * 109.46917 * 119.99476 * 2 1 3 30 30 H 0.96992 * 119.99644 * 94.99836 * 5 3 2 31 31 H 1.07997 * 119.82110 * 359.97438 * 9 8 6 32 32 H 1.08001 * 119.79298 * 180.26971 * 10 9 8 33 33 H 1.08003 * 119.97480 * 179.72029 * 11 10 9 34 34 H 0.97001 * 120.00134 * 179.97438 * 16 15 13 35 35 H 1.08006 * 120.20589 * 359.95947 * 21 8 6 36 36 H 1.09008 * 115.55029 * 325.58026 * 22 3 2 37 37 H 1.09002 * 117.50238 * 215.00084 * 23 22 3 38 38 H 1.08995 * 117.49699 * 0.02595 * 23 22 3 39 39 H 1.09000 * 117.49417 * 359.97107 * 24 22 3 40 40 H 1.08995 * 117.50064 * 144.97102 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3668 7 8 -0.3413 2.6318 0.4322 8 6 0.0435 3.3251 2.6306 9 6 0.9344 3.3571 3.7092 10 6 0.5773 3.9780 4.8927 11 6 -0.6631 4.5617 5.0272 12 6 -1.5745 4.5349 3.9550 13 6 -2.8487 5.1339 4.0899 14 1 -2.9998 5.9258 4.8085 15 6 -3.9135 4.7004 3.2921 16 7 -3.8484 3.5422 2.6871 17 14 -5.4280 5.7754 3.0910 18 1 -5.0357 7.0756 2.4904 19 1 -6.4043 5.0940 2.2036 20 1 -6.0478 6.0109 4.4198 21 6 -1.2115 3.9104 2.7497 22 6 3.5648 1.4444 -0.1257 23 6 4.1656 1.9736 -1.4295 24 6 4.2703 2.8019 -0.1464 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.2718 2.1232 1.9977 31 1 1.9074 2.8979 3.6158 32 1 1.2737 4.0011 5.7179 33 1 -0.9362 5.0406 5.9560 34 1 -4.5867 3.2416 2.1344 35 1 -1.9036 3.8853 1.9209 36 1 4.0781 0.6179 0.3659 37 1 5.0740 1.4954 -1.7957 38 1 3.4745 2.3209 -2.1975 39 1 3.6480 3.6936 -0.0709 40 1 5.2474 2.8686 0.3319 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598231881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = -23.948986 kcal Electronic energy + Delta-G solvation = -20819.212128 eV Core-core repulsion = 17791.011332 eV Total energy + Delta-G solvation = -3028.200796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17186 -39.21920 -38.28324 -35.66368 -35.43990 -33.49949 -31.69097 -31.23054 -28.05801 -27.10096 -24.38091 -23.19428 -22.81470 -22.58569 -21.45142 -21.04844 -19.43980 -17.97909 -17.40392 -16.97066 -16.52995 -16.30083 -15.90136 -15.45781 -15.32602 -14.95799 -14.57701 -14.26440 -14.12260 -13.80179 -13.46328 -13.20229 -12.93012 -12.80477 -12.57044 -12.53093 -12.36921 -12.21396 -12.02410 -11.87258 -11.75370 -11.50115 -11.32927 -11.09956 -11.06456 -10.59950 -9.97022 -9.45621 -9.37498 -8.66721 -6.38412 0.41883 1.01865 1.35148 1.47035 1.49896 2.14752 2.19416 2.21505 2.79986 3.04121 3.54054 3.70877 3.93573 4.06943 4.12657 4.16861 4.26639 4.38459 4.42960 4.50063 4.61294 4.79216 4.81925 4.91797 4.94600 5.00140 5.04961 5.08727 5.14466 5.20744 5.28531 5.31793 5.34188 5.45389 5.52812 5.64497 5.88057 5.94068 6.05891 6.29605 6.54199 6.75789 6.87903 6.95311 7.41957 8.29659 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.004802 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.410522 B = 5829.875713 C = 6466.423631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.172 3.828 4 H 0.058 0.942 5 N -0.706 5.706 6 C 0.561 3.439 7 O -0.579 6.579 8 C -0.139 4.139 9 C -0.198 4.198 10 C -0.096 4.096 11 C -0.220 4.220 12 C 0.067 3.933 13 C -0.500 4.500 14 H 0.083 0.917 15 C 0.031 3.969 16 N -0.825 5.825 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.252 1.252 21 C -0.132 4.132 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.177 4.177 25 H 0.058 0.942 26 H 0.025 0.975 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.410 0.590 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.286 0.714 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.274 -5.104 -4.007 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.068 3.932 4 H 0.076 0.924 5 N -0.358 5.358 6 C 0.351 3.649 7 O -0.460 6.460 8 C -0.142 4.142 9 C -0.218 4.218 10 C -0.114 4.114 11 C -0.240 4.240 12 C 0.065 3.935 13 C -0.530 4.530 14 H 0.102 0.898 15 C -0.184 4.184 16 N -0.450 5.450 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.176 1.176 21 C -0.153 4.153 22 C -0.182 4.182 23 C -0.199 4.199 24 C -0.214 4.214 25 H 0.077 0.923 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.247 0.753 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.610 -5.316 -4.824 15.387 hybrid contribution -1.072 0.501 0.181 1.197 sum 12.538 -4.815 -4.643 14.211 Atomic orbital electron populations 1.21754 0.97263 1.00317 1.00825 1.21885 0.94611 0.95712 1.03634 1.20619 0.93225 0.93214 0.86116 0.92420 1.45815 1.15456 1.57284 1.17259 1.18598 0.81750 0.77324 0.87236 1.90681 1.52686 1.60975 1.41682 1.19857 0.96325 1.03476 0.94521 1.20856 0.99496 1.07727 0.93736 1.20921 0.95792 0.97231 0.97448 1.21402 0.96560 1.08126 0.97880 1.17941 0.93723 0.90948 0.90862 1.19848 0.94237 1.18724 1.20147 0.89848 1.26839 1.03514 0.95287 0.92776 1.69893 1.33429 1.18005 1.23695 0.85262 0.76170 0.78743 0.79643 1.18515 1.19659 1.17560 1.21442 0.94621 1.01331 0.97894 1.22495 0.92039 0.99503 1.04142 1.23068 1.03213 1.03122 0.90516 1.22957 1.02383 0.93865 1.02177 0.92322 0.95571 0.94375 0.88843 0.90515 0.75262 0.84696 0.84440 0.87473 0.90356 0.88373 0.84924 0.86145 0.89645 0.90746 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 8.51 71.98 0.61 -4.20 16 2 C -0.12 -2.98 5.59 30.60 0.17 -2.81 16 3 C 0.17 4.59 2.45 44.99 0.11 4.70 16 4 H 0.06 1.87 7.33 -2.39 -0.02 1.86 16 5 N -0.71 -22.24 4.86 -445.37 -2.16 -24.40 16 6 C 0.56 24.55 6.34 86.80 0.55 25.10 16 7 O -0.58 -29.60 13.47 -3.87 -0.05 -29.65 16 8 C -0.14 -6.62 5.87 -20.13 -0.12 -6.73 16 9 C -0.20 -7.87 9.55 22.70 0.22 -7.66 16 10 C -0.10 -3.85 10.01 22.18 0.22 -3.62 16 11 C -0.22 -10.43 9.78 22.77 0.22 -10.21 16 12 C 0.07 3.73 5.57 -21.32 -0.12 3.61 16 13 C -0.50 -27.69 9.05 23.47 0.21 -27.48 16 14 H 0.08 4.34 7.91 -2.92 -0.02 4.32 16 15 C 0.03 1.64 5.14 85.25 0.44 2.07 16 16 N -0.82 -46.73 10.96 21.82 0.24 -46.49 16 17 Si 0.98 40.21 29.60 68.60 2.03 42.24 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 21 C -0.13 -7.45 8.24 23.01 0.19 -7.26 16 22 C -0.16 -2.97 5.22 -10.80 -0.06 -3.03 16 23 C -0.16 -2.62 10.18 30.62 0.31 -2.31 16 24 C -0.18 -3.19 10.13 30.62 0.31 -2.88 16 25 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.03 1.06 5.64 -2.39 -0.01 1.05 16 27 H 0.04 1.38 7.84 -2.39 -0.02 1.37 16 28 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.41 10.71 6.62 -92.71 -0.61 10.10 16 31 H 0.14 4.06 6.38 -2.91 -0.02 4.05 16 32 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 33 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 35 H 0.10 6.16 5.74 -2.91 -0.02 6.14 16 36 H 0.13 1.84 8.11 -2.38 -0.02 1.82 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.57 8.05 -2.39 -0.02 1.55 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -68.32 328.72 3.75 -64.57 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: 0.43 Total: 36.45 kcal Atomic # 6 Polarization: -45.99 SS G_CDS: 3.27 Total: -42.71 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.93 Total: -70.89 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.05 Total: -29.65 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -68.32 3.75 -64.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598231881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.617 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds