Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47129 * 2 1 4 4 C 1.53007 * 109.46710 * 119.99707 * 2 1 3 5 5 H 1.08994 * 110.34610 * 57.88416 * 4 2 1 6 6 C 1.54349 * 110.30020 * 295.75732 * 4 2 1 7 7 C 1.54345 * 102.38970 * 214.73018 * 6 4 2 8 8 H 1.09005 * 110.38703 * 267.38338 * 7 6 4 9 9 N 1.46498 * 110.30104 * 145.27550 * 7 6 4 10 10 C 1.34781 * 119.99945 * 157.80298 * 9 7 6 11 11 O 1.21684 * 120.00054 * 359.71604 * 10 9 7 12 12 C 1.46376 * 119.99908 * 180.02562 * 10 9 7 13 13 H 1.08005 * 120.00193 * 359.97438 * 12 10 9 14 14 C 1.40052 * 120.00022 * 179.97438 * 12 10 9 15 15 N 1.30669 * 119.99766 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99972 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47071 * 59.99883 * 16 14 12 18 18 H 1.48496 * 109.47143 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 300.00081 * 16 14 12 20 20 C 1.51363 * 105.17227 * 26.35116 * 7 6 4 21 21 C 1.38496 * 130.39438 * 162.81067 * 20 7 6 22 22 C 1.38105 * 120.21640 * 180.02562 * 21 20 7 23 23 C 1.38258 * 119.93680 * 359.97438 * 22 21 20 24 24 C 1.38103 * 119.93010 * 359.97438 * 23 22 21 25 25 C 1.38217 * 109.75893 * 342.80905 * 20 7 6 26 26 H 1.09000 * 109.47184 * 185.23861 * 1 2 3 27 27 H 1.08997 * 109.47319 * 305.24301 * 1 2 3 28 28 H 1.09003 * 109.47000 * 65.24363 * 1 2 3 29 29 H 1.09003 * 109.47405 * 239.99249 * 2 1 3 30 30 H 1.08997 * 109.47159 * 173.41697 * 3 2 1 31 31 H 1.09006 * 109.47121 * 293.40945 * 3 2 1 32 32 H 1.08995 * 109.47652 * 53.41014 * 3 2 1 33 33 H 1.09001 * 110.81961 * 96.50650 * 6 4 2 34 34 H 1.08994 * 110.82168 * 332.95605 * 6 4 2 35 35 H 0.97003 * 120.00251 * 337.79515 * 9 7 6 36 36 H 0.96997 * 119.99758 * 180.02562 * 15 14 12 37 37 H 1.08000 * 119.89553 * 0.02562 * 21 20 7 38 38 H 1.08000 * 120.03240 * 180.02562 * 22 21 20 39 39 H 1.07991 * 120.03337 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.89114 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6540 -1.7400 1.2829 6 6 1.6253 0.0507 2.5200 7 6 2.8290 -0.1835 3.4573 8 1 2.6564 -1.0571 4.0860 9 7 3.0647 1.0005 4.2873 10 6 3.7363 0.8854 5.4502 11 8 4.1423 -0.2028 5.8132 12 6 3.9714 2.0682 6.2797 13 1 3.6070 3.0333 5.9598 14 6 4.6688 1.9486 7.4884 15 7 5.1091 0.7809 7.8757 16 14 4.9694 3.4582 8.5466 17 1 3.6674 4.0534 8.9411 18 1 5.7245 3.0670 9.7640 19 1 5.7558 4.4545 7.7758 20 6 4.0068 -0.4229 2.5373 21 6 5.3676 -0.3744 2.7902 22 6 6.2721 -0.6330 1.7791 23 6 5.8186 -0.9420 0.5101 24 6 4.4620 -0.9920 0.2562 25 6 3.5535 -0.7319 1.2687 26 1 -0.3633 -1.0234 0.0938 27 1 -0.3634 0.5930 0.8393 28 1 -0.3633 0.4304 -0.9333 29 1 1.8934 -0.5140 -0.8899 30 1 3.1236 1.4447 0.1178 31 1 1.7761 1.9211 -0.9431 32 1 1.5836 1.9892 0.8251 33 1 0.7141 -0.3678 2.9475 34 1 1.5019 1.1122 2.3055 35 1 2.7376 1.8673 3.9999 36 1 5.5918 0.6980 8.7129 37 1 5.7227 -0.1335 3.7813 38 1 7.3326 -0.5947 1.9797 39 1 6.5245 -1.1441 -0.2818 40 1 4.1085 -1.2338 -0.7352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600415946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = -29.910195 kcal Electronic energy + Delta-G solvation = -21272.963537 eV Core-core repulsion = 18244.504244 eV Total energy + Delta-G solvation = -3028.459293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28485 -37.08731 -36.62321 -34.07612 -32.44094 -31.36504 -30.22387 -28.39148 -27.10279 -26.73191 -25.28256 -22.41206 -21.69306 -20.73790 -19.41109 -18.79576 -17.20139 -16.06602 -15.65512 -15.30390 -14.89385 -14.69362 -14.22385 -13.86540 -13.75268 -13.45975 -13.17957 -12.76627 -12.32419 -12.26844 -12.14435 -11.87514 -11.76574 -11.31604 -11.27027 -11.08869 -11.05554 -10.88721 -10.68129 -10.47594 -10.40705 -10.36158 -10.17160 -10.12875 -8.84256 -8.32875 -8.16263 -7.57773 -7.49985 -6.17434 -4.63186 1.78125 1.87482 3.16049 3.21167 3.22837 4.10263 4.21356 4.57106 4.66076 4.71671 4.83881 5.05517 5.15602 5.26735 5.35477 5.45823 5.53154 5.56251 5.62349 5.65408 5.70839 5.85949 5.90086 5.92644 5.99943 6.07315 6.15751 6.21408 6.25848 6.34580 6.39239 6.47279 6.63040 6.63622 6.86705 7.02640 7.22798 7.44023 7.47800 7.94368 8.11981 8.34113 9.03494 9.55269 10.61062 10.79964 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.005306 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.403537 B = 5275.703583 C = 5993.250540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.149 4.149 4 C -0.041 4.041 5 H 0.082 0.918 6 C -0.123 4.123 7 C 0.190 3.810 8 H 0.088 0.912 9 N -0.757 5.757 10 C 0.556 3.444 11 O -0.578 6.578 12 C -0.546 4.546 13 H 0.066 0.934 14 C 0.089 3.911 15 N -0.768 5.768 16 Si 0.906 3.094 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.086 4.086 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.095 4.095 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.380 0.620 36 H 0.268 0.732 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 -0.487 -15.152 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.060 4.060 5 H 0.100 0.900 6 C -0.161 4.161 7 C 0.084 3.916 8 H 0.106 0.894 9 N -0.411 5.411 10 C 0.360 3.640 11 O -0.461 6.461 12 C -0.583 4.583 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.396 5.396 16 Si 0.730 3.270 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.088 4.088 21 C -0.098 4.098 22 C -0.147 4.147 23 C -0.147 4.147 24 C -0.134 4.134 25 C -0.096 4.096 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.212 0.788 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.767 -1.405 -14.705 15.522 hybrid contribution 0.179 1.132 0.380 1.207 sum -4.587 -0.274 -14.325 15.044 Atomic orbital electron populations 1.21862 0.95296 1.01678 1.01633 1.21051 0.95325 0.96558 0.97332 1.21922 1.01913 0.95687 1.01105 1.20704 0.90951 0.99371 0.94945 0.89953 1.22755 0.97878 1.01279 0.94149 1.20052 0.89477 0.92024 0.90074 0.89389 1.46216 1.63325 1.07795 1.23720 1.18198 0.77039 0.90095 0.78684 1.90605 1.54268 1.28954 1.72223 1.20857 1.38334 0.93944 1.05186 0.91611 1.25677 0.93680 0.96290 0.97418 1.70004 1.26763 1.23530 1.19337 0.86471 0.79003 0.82210 0.79286 1.19321 1.20587 1.19335 1.21175 0.95016 0.97639 0.94979 1.20932 0.92178 0.96891 0.99787 1.21050 0.99307 1.01103 0.93198 1.20899 0.95119 1.01919 0.96795 1.20411 0.92569 1.02452 0.98005 1.20431 0.94893 1.00306 0.93957 0.92810 0.92338 0.93020 0.91420 0.92119 0.93311 0.92265 0.90684 0.90028 0.78823 0.92108 0.85292 0.86545 0.86738 0.87152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.92 37.16 0.33 -1.04 16 2 C -0.08 -0.91 2.61 -90.62 -0.24 -1.14 16 3 C -0.15 -1.69 8.58 37.15 0.32 -1.37 16 4 C -0.04 -0.54 2.74 -90.73 -0.25 -0.79 16 5 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 6 C -0.12 -1.77 5.20 -25.32 -0.13 -1.90 16 7 C 0.19 3.69 3.17 -68.05 -0.22 3.47 16 8 H 0.09 1.94 7.64 -51.93 -0.40 1.55 16 9 N -0.76 -16.69 5.11 -55.33 -0.28 -16.98 16 10 C 0.56 15.44 7.20 -12.98 -0.09 15.35 16 11 O -0.58 -18.17 14.17 5.20 0.07 -18.10 16 12 C -0.55 -15.28 9.54 -35.63 -0.34 -15.62 16 13 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 14 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 15 N -0.77 -22.83 11.83 55.55 0.66 -22.17 16 16 Si 0.91 20.12 29.56 -169.99 -5.02 15.09 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 C -0.09 -1.64 5.78 -104.21 -0.60 -2.24 16 21 C -0.08 -1.61 9.87 -39.54 -0.39 -2.00 16 22 C -0.13 -2.16 10.05 -39.62 -0.40 -2.56 16 23 C -0.13 -1.88 10.05 -39.62 -0.40 -2.27 16 24 C -0.12 -1.66 9.53 -39.54 -0.38 -2.04 16 25 C -0.10 -1.48 4.36 -104.21 -0.45 -1.94 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.55 7.57 -51.93 -0.39 0.16 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 30 H 0.06 0.80 6.87 -51.93 -0.36 0.44 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.68 6.24 -51.93 -0.32 0.35 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.11 5.32 -51.93 -0.28 0.84 16 35 H 0.38 7.49 8.37 -40.82 -0.34 7.14 16 36 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 37 H 0.13 3.09 7.09 -52.49 -0.37 2.72 16 38 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.11 1.30 7.82 -52.48 -0.41 0.89 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -32.59 322.83 -8.83 -41.42 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -5.78 Total: 9.59 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -3.33 Total: -13.72 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.37 Total: -39.15 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.07 Total: -18.10 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.59 -8.83 -41.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600415946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.509 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds