Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47129 * 2 1 4 4 C 1.53007 * 109.46710 * 119.99707 * 2 1 3 5 5 H 1.08994 * 110.34610 * 57.88416 * 4 2 1 6 6 C 1.54349 * 110.30020 * 295.75732 * 4 2 1 7 7 C 1.54345 * 102.38970 * 214.73018 * 6 4 2 8 8 H 1.09005 * 110.38703 * 267.38338 * 7 6 4 9 9 N 1.46498 * 110.30104 * 145.27550 * 7 6 4 10 10 C 1.34781 * 119.99945 * 157.80298 * 9 7 6 11 11 O 1.21684 * 120.00054 * 359.71604 * 10 9 7 12 12 C 1.46376 * 119.99908 * 180.02562 * 10 9 7 13 13 H 1.08005 * 120.00193 * 359.97438 * 12 10 9 14 14 C 1.40052 * 120.00022 * 179.97438 * 12 10 9 15 15 N 1.30669 * 119.99766 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99972 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47071 * 59.99883 * 16 14 12 18 18 H 1.48496 * 109.47143 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47158 * 300.00081 * 16 14 12 20 20 C 1.51363 * 105.17227 * 26.35116 * 7 6 4 21 21 C 1.38496 * 130.39438 * 162.81067 * 20 7 6 22 22 C 1.38105 * 120.21640 * 180.02562 * 21 20 7 23 23 C 1.38258 * 119.93680 * 359.97438 * 22 21 20 24 24 C 1.38103 * 119.93010 * 359.97438 * 23 22 21 25 25 C 1.38217 * 109.75893 * 342.80905 * 20 7 6 26 26 H 1.09000 * 109.47184 * 185.23861 * 1 2 3 27 27 H 1.08997 * 109.47319 * 305.24301 * 1 2 3 28 28 H 1.09003 * 109.47000 * 65.24363 * 1 2 3 29 29 H 1.09003 * 109.47405 * 239.99249 * 2 1 3 30 30 H 1.08997 * 109.47159 * 173.41697 * 3 2 1 31 31 H 1.09006 * 109.47121 * 293.40945 * 3 2 1 32 32 H 1.08995 * 109.47652 * 53.41014 * 3 2 1 33 33 H 1.09001 * 110.81961 * 96.50650 * 6 4 2 34 34 H 1.08994 * 110.82168 * 332.95605 * 6 4 2 35 35 H 0.97003 * 120.00251 * 337.79515 * 9 7 6 36 36 H 0.96997 * 119.99758 * 180.02562 * 15 14 12 37 37 H 1.08000 * 119.89553 * 0.02562 * 21 20 7 38 38 H 1.08000 * 120.03240 * 180.02562 * 22 21 20 39 39 H 1.07991 * 120.03337 * 179.97438 * 23 22 21 40 40 H 1.08004 * 119.89114 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6540 -1.7400 1.2829 6 6 1.6253 0.0507 2.5200 7 6 2.8290 -0.1835 3.4573 8 1 2.6564 -1.0571 4.0860 9 7 3.0647 1.0005 4.2873 10 6 3.7363 0.8854 5.4502 11 8 4.1423 -0.2028 5.8132 12 6 3.9714 2.0682 6.2797 13 1 3.6070 3.0333 5.9598 14 6 4.6688 1.9486 7.4884 15 7 5.1091 0.7809 7.8757 16 14 4.9694 3.4582 8.5466 17 1 3.6674 4.0534 8.9411 18 1 5.7245 3.0670 9.7640 19 1 5.7558 4.4545 7.7758 20 6 4.0068 -0.4229 2.5373 21 6 5.3676 -0.3744 2.7902 22 6 6.2721 -0.6330 1.7791 23 6 5.8186 -0.9420 0.5101 24 6 4.4620 -0.9920 0.2562 25 6 3.5535 -0.7319 1.2687 26 1 -0.3633 -1.0234 0.0938 27 1 -0.3634 0.5930 0.8393 28 1 -0.3633 0.4304 -0.9333 29 1 1.8934 -0.5140 -0.8899 30 1 3.1236 1.4447 0.1178 31 1 1.7761 1.9211 -0.9431 32 1 1.5836 1.9892 0.8251 33 1 0.7141 -0.3678 2.9475 34 1 1.5019 1.1122 2.3055 35 1 2.7376 1.8673 3.9999 36 1 5.5918 0.6980 8.7129 37 1 5.7227 -0.1335 3.7813 38 1 7.3326 -0.5947 1.9797 39 1 6.5245 -1.1441 -0.2818 40 1 4.1085 -1.2338 -0.7352 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600415946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = -50.486676 kcal Electronic energy + Delta-G solvation = -21273.855801 eV Core-core repulsion = 18244.504244 eV Total energy + Delta-G solvation = -3029.351557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.59213 -39.07985 -37.76744 -35.64560 -34.53586 -32.93033 -31.61139 -29.71877 -28.58985 -27.88035 -26.81282 -23.69841 -22.98681 -22.29627 -21.18556 -19.91659 -19.11764 -17.58485 -17.25908 -16.94248 -16.11523 -16.05603 -15.83928 -15.32982 -15.00981 -14.85459 -14.42171 -14.24818 -13.87725 -13.78399 -13.41792 -13.13672 -12.91766 -12.82776 -12.74294 -12.64660 -12.40436 -12.33342 -12.17263 -12.05667 -11.83292 -11.50204 -11.39890 -11.20517 -10.92960 -9.87806 -9.67052 -9.46075 -9.38036 -8.28634 -6.85778 0.48374 0.53082 1.37401 1.41116 1.52411 2.23323 2.47937 2.85892 3.19267 3.48668 3.55425 3.76029 3.98452 4.07731 4.18133 4.23900 4.31719 4.35929 4.39688 4.49875 4.66237 4.75656 4.81338 4.93322 4.94855 4.98388 5.09531 5.15941 5.21556 5.24887 5.29388 5.30833 5.35628 5.54631 5.57768 5.62060 5.68996 5.84104 5.88342 6.16120 6.24348 6.32137 6.86498 7.56825 8.51300 8.68680 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021576 B = 0.005306 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.403537 B = 5275.703583 C = 5993.250540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.076 4.076 3 C -0.149 4.149 4 C -0.036 4.036 5 H 0.096 0.904 6 C -0.110 4.110 7 C 0.183 3.817 8 H 0.047 0.953 9 N -0.745 5.745 10 C 0.543 3.457 11 O -0.626 6.626 12 C -0.577 4.577 13 H 0.084 0.916 14 C 0.031 3.969 15 N -0.822 5.822 16 Si 0.995 3.005 17 H -0.253 1.253 18 H -0.274 1.274 19 H -0.256 1.256 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.137 4.137 23 C -0.116 4.116 24 C -0.108 4.108 25 C -0.085 4.085 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.392 0.608 36 H 0.273 0.727 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.156 0.844 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 0.624 -18.259 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.206 4.206 4 C -0.054 4.054 5 H 0.114 0.886 6 C -0.147 4.147 7 C 0.077 3.923 8 H 0.065 0.935 9 N -0.398 5.398 10 C 0.347 3.653 11 O -0.513 6.513 12 C -0.614 4.614 13 H 0.102 0.898 14 C -0.184 4.184 15 N -0.451 5.451 16 Si 0.814 3.186 17 H -0.177 1.177 18 H -0.199 1.199 19 H -0.181 1.181 20 C -0.121 4.121 21 C -0.136 4.136 22 C -0.155 4.155 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.086 4.086 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.226 0.774 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.173 0.827 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.992 -0.277 -17.866 18.846 hybrid contribution 0.564 0.727 1.255 1.556 sum -5.428 0.449 -16.611 17.482 Atomic orbital electron populations 1.21849 0.93866 1.02304 1.02290 1.21024 0.96407 0.95759 0.96220 1.21919 1.00465 0.96347 1.01900 1.20763 0.89105 1.00202 0.95320 0.88641 1.22726 0.95874 1.02483 0.93654 1.20249 0.92567 0.89322 0.90117 0.93501 1.45881 1.61845 1.09424 1.22624 1.18514 0.77073 0.89606 0.80113 1.90555 1.56280 1.30617 1.73879 1.21409 1.39090 0.94688 1.06167 0.89828 1.26928 0.92571 1.00175 0.98766 1.70187 1.27863 1.26826 1.20225 0.85115 0.79536 0.77030 0.76879 1.17714 1.19867 1.18056 1.21147 0.94139 1.00047 0.96724 1.20725 0.93935 1.00512 0.98381 1.21207 0.99352 1.01221 0.93695 1.21335 0.96286 0.99557 0.96221 1.20890 0.92130 1.00299 0.99206 1.20731 0.96624 0.98729 0.92484 0.92044 0.92780 0.91558 0.89682 0.94153 0.91459 0.92875 0.89348 0.88940 0.77422 0.91702 0.91032 0.85495 0.82686 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.92 71.98 0.64 -1.48 16 2 C -0.08 -1.33 2.61 -10.79 -0.03 -1.36 16 3 C -0.15 -2.92 8.58 71.98 0.62 -2.30 16 4 C -0.04 -0.84 2.74 -10.87 -0.03 -0.87 16 5 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 6 C -0.11 -3.09 5.20 31.51 0.16 -2.93 16 7 C 0.18 7.53 3.17 44.91 0.14 7.67 16 8 H 0.05 2.28 7.64 -2.38 -0.02 2.26 16 9 N -0.74 -34.93 5.11 -447.20 -2.28 -37.22 16 10 C 0.54 32.32 7.20 86.36 0.62 32.94 16 11 O -0.63 -42.86 14.17 -4.30 -0.06 -42.92 16 12 C -0.58 -33.64 9.54 24.83 0.24 -33.40 16 13 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 14 C 0.03 1.75 5.50 85.31 0.47 2.22 16 15 N -0.82 -51.51 11.83 21.84 0.26 -51.26 16 16 Si 1.00 42.04 29.56 68.60 2.03 44.06 16 17 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 18 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 C -0.12 -4.74 5.78 -19.60 -0.11 -4.85 16 21 C -0.12 -5.12 9.87 22.30 0.22 -4.90 16 22 C -0.14 -4.68 10.05 22.24 0.22 -4.46 16 23 C -0.12 -3.06 10.05 22.24 0.22 -2.83 16 24 C -0.11 -2.69 9.53 22.30 0.21 -2.48 16 25 C -0.09 -2.53 4.36 -19.59 -0.09 -2.62 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.84 7.57 -2.39 -0.02 0.82 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.28 7.84 -2.39 -0.02 1.26 16 30 H 0.04 0.95 6.87 -2.39 -0.02 0.94 16 31 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.05 1.09 6.24 -2.39 -0.01 1.07 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.41 5.32 -2.39 -0.01 2.40 16 35 H 0.39 16.09 8.37 -92.71 -0.78 15.31 16 36 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 37 H 0.07 3.89 7.09 -2.91 -0.02 3.87 16 38 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 39 H 0.16 2.87 8.06 -2.92 -0.02 2.84 16 40 H 0.15 2.64 7.82 -2.91 -0.02 2.62 16 Total: -1.00 -78.63 322.83 3.72 -74.91 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.27 Total: 34.08 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 3.52 Total: -21.65 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -2.03 Total: -88.47 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.06 Total: -42.92 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -78.63 3.72 -74.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600415946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.421 kcal (2) G-P(sol) polarization free energy of solvation -78.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds