Wall clock time and date at job start Mon Mar 30 2020 01:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.53008 * 109.46605 * 119.99615 * 2 1 3 5 5 C 1.53504 * 114.20215 * 180.02562 * 4 2 1 6 6 N 1.47064 * 87.98219 * 220.34363 * 5 4 2 7 7 C 1.34772 * 136.05480 * 207.08274 * 6 5 4 8 8 O 1.21612 * 120.00429 * 355.81916 * 7 6 5 9 9 C 1.47437 * 120.00117 * 175.81795 * 7 6 5 10 10 C 1.39229 * 120.27736 * 25.39387 * 9 7 6 11 11 C 1.38225 * 120.08758 * 179.97438 * 10 9 7 12 12 C 1.38818 * 120.67885 * 0.02562 * 11 10 9 13 13 C 1.37598 * 120.57064 * 0.02562 * 12 11 10 14 14 C 1.40708 * 119.88382 * 359.97438 * 13 12 11 15 15 C 1.40884 * 120.33197 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00400 * 214.17933 * 15 14 13 17 17 C 1.40280 * 119.99568 * 34.18116 * 15 14 13 18 18 N 1.30624 * 120.00394 * 5.85527 * 17 15 14 19 19 Si 1.86805 * 119.99461 * 185.85145 * 17 15 14 20 20 H 1.48497 * 109.46940 * 60.00416 * 19 17 15 21 21 H 1.48502 * 109.46561 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47381 * 299.99795 * 19 17 15 23 23 C 1.47063 * 87.88538 * 27.34549 * 6 5 4 24 24 H 1.09001 * 109.46716 * 60.00589 * 1 2 3 25 25 H 1.09002 * 109.47063 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47293 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47241 * 239.99057 * 2 1 3 28 28 H 1.09005 * 109.47074 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46856 * 299.99325 * 3 2 1 30 30 H 1.08998 * 109.47176 * 59.99771 * 3 2 1 31 31 H 1.08995 * 113.28553 * 313.06616 * 4 2 1 32 32 H 1.08994 * 113.46269 * 105.56436 * 5 4 2 33 33 H 1.08992 * 113.46791 * 335.12492 * 5 4 2 34 34 H 1.07999 * 119.95801 * 359.97250 * 10 9 7 35 35 H 1.08002 * 119.65971 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.71720 * 179.72652 * 12 11 10 37 37 H 1.07998 * 120.06189 * 179.97438 * 13 12 11 38 38 H 0.96997 * 120.00540 * 180.02562 * 18 17 15 39 39 H 1.08995 * 113.47123 * 87.43516 * 23 6 5 40 40 H 1.09002 * 113.46618 * 217.87437 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5697 -0.7840 1.3595 6 7 3.4260 -2.1642 1.8467 7 6 4.1358 -2.9928 2.6378 8 8 5.2164 -2.6420 3.0718 9 6 3.6024 -4.3247 2.9773 10 6 2.6923 -4.9529 2.1314 11 6 2.1951 -6.2018 2.4532 12 6 2.5930 -6.8440 3.6179 13 6 3.4901 -6.2480 4.4742 14 6 4.0114 -4.9769 4.1699 15 6 4.9309 -4.3582 5.0396 16 1 4.9227 -3.2850 5.1596 17 6 5.8572 -5.1363 5.7499 18 7 5.9447 -6.4193 5.5204 19 14 6.9658 -4.3376 7.0237 20 1 6.1329 -3.7147 8.0837 21 1 7.8477 -5.3681 7.6281 22 1 7.7982 -3.2950 6.3716 23 6 2.1704 -2.2444 1.0854 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.5389 -0.4048 2.1642 32 1 3.9796 -0.1014 2.1038 33 1 4.0773 -0.7139 0.3975 34 1 2.3744 -4.4637 1.2225 35 1 1.4892 -6.6826 1.7922 36 1 2.1913 -7.8177 3.8564 37 1 3.7937 -6.7548 5.3782 38 1 6.5849 -6.9574 6.0117 39 1 2.3091 -2.5592 0.0511 40 1 1.3882 -2.8060 1.5961 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601367035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:49 Heat of formation + Delta-G solvation = 9.728325 kcal Electronic energy + Delta-G solvation = -20889.563336 eV Core-core repulsion = 17862.822898 eV Total energy + Delta-G solvation = -3026.740438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10991 -37.94459 -36.40449 -34.56976 -33.63877 -30.23140 -29.72359 -28.10809 -27.48795 -25.50664 -25.22979 -23.10456 -21.35741 -20.79244 -19.80118 -18.55743 -17.24054 -16.26661 -15.46603 -15.42291 -15.01402 -14.76037 -14.20571 -13.70095 -13.66417 -13.16994 -12.95294 -12.82744 -12.55088 -12.44469 -12.23435 -11.90058 -11.84416 -11.53330 -11.34204 -11.10113 -11.00288 -10.86699 -10.76124 -10.65252 -10.46975 -10.18453 -9.92081 -9.59413 -9.24713 -8.54500 -8.04728 -7.55788 -7.34340 -6.74407 -4.37614 2.40981 2.84824 3.10656 3.16040 3.27322 3.54241 3.99895 4.06567 4.36335 4.65991 4.76860 4.86197 5.17939 5.22198 5.43888 5.51960 5.53306 5.62096 5.64563 5.70974 5.75239 5.79691 5.81591 5.97670 5.99392 6.06432 6.14711 6.19116 6.30263 6.40642 6.45164 6.81299 7.00603 7.12881 7.24768 7.48486 7.66512 7.93348 8.01020 8.19069 8.47457 8.65827 8.82023 8.89422 9.34921 10.19887 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021391 B = 0.005209 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.620953 B = 5374.475498 C = 6443.823293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.123 4.123 5 C 0.109 3.891 6 N -0.655 5.655 7 C 0.598 3.402 8 O -0.533 6.533 9 C -0.251 4.251 10 C -0.062 4.062 11 C -0.247 4.247 12 C -0.095 4.095 13 C -0.150 4.150 14 C 0.147 3.853 15 C -0.418 4.418 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.797 5.797 19 Si 0.917 3.083 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.262 1.262 23 C 0.107 3.893 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.122 0.878 38 H 0.282 0.718 39 H 0.075 0.925 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 8.981 -7.865 14.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 C -0.204 4.204 4 C -0.142 4.142 5 C -0.014 4.014 6 N -0.393 5.393 7 C 0.394 3.606 8 O -0.410 6.410 9 C -0.256 4.256 10 C -0.081 4.081 11 C -0.266 4.266 12 C -0.114 4.114 13 C -0.169 4.169 14 C 0.143 3.857 15 C -0.447 4.447 16 H 0.106 0.894 17 C -0.146 4.146 18 N -0.422 5.422 19 Si 0.741 3.259 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.186 1.186 23 C -0.017 4.017 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.659 8.789 -7.372 13.793 hybrid contribution 0.566 0.103 0.324 0.660 sum -7.093 8.891 -7.048 13.381 Atomic orbital electron populations 1.21814 0.94988 1.01952 1.01554 1.21039 0.95902 0.96206 0.97189 1.21822 1.01247 0.95769 1.01583 1.23183 0.96271 0.95697 0.99056 1.22795 0.95093 0.84788 0.98761 1.49694 1.25504 1.14843 1.49246 1.18139 0.82832 0.83668 0.75977 1.90718 1.20649 1.75919 1.53733 1.19432 1.09899 0.96488 0.99800 1.20841 0.95121 0.95003 0.97092 1.20295 1.08092 0.97592 1.00617 1.20818 0.97714 0.97835 0.94985 1.21381 0.97870 0.97210 1.00420 1.17446 0.88862 0.90701 0.88691 1.19737 1.11508 0.95618 1.17825 0.89434 1.26005 0.97794 0.94480 0.96273 1.69679 1.30910 1.06457 1.35178 0.86209 0.79785 0.79732 0.80138 1.18831 1.20351 1.18635 1.23028 0.87463 0.95189 0.96042 0.92888 0.92432 0.92653 0.90925 0.92479 0.92864 0.92620 0.88043 0.91211 0.91004 0.88727 0.89141 0.89072 0.86063 0.90681 0.90726 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.19 37.16 0.34 -0.83 16 2 C -0.08 -0.76 2.74 -90.62 -0.25 -1.01 16 3 C -0.15 -1.21 9.00 37.16 0.33 -0.88 16 4 C -0.12 -1.45 3.49 -89.96 -0.31 -1.76 16 5 C 0.11 1.61 7.26 -8.51 -0.06 1.55 16 6 N -0.65 -12.51 3.67 -186.35 -0.68 -13.19 16 7 C 0.60 14.76 7.63 -12.52 -0.10 14.66 16 8 O -0.53 -15.04 15.15 5.27 0.08 -14.96 16 9 C -0.25 -6.41 5.89 -104.36 -0.61 -7.02 16 10 C -0.06 -1.38 8.74 -39.22 -0.34 -1.72 16 11 C -0.25 -5.37 10.03 -39.37 -0.39 -5.76 16 12 C -0.09 -2.18 10.01 -39.60 -0.40 -2.57 16 13 C -0.15 -3.88 8.62 -38.88 -0.34 -4.21 16 14 C 0.15 4.05 5.52 -106.54 -0.59 3.46 16 15 C -0.42 -11.80 7.51 -37.81 -0.28 -12.09 16 16 H 0.09 2.54 6.57 -52.49 -0.34 2.20 16 17 C 0.07 1.90 5.31 -17.30 -0.09 1.81 16 18 N -0.80 -21.13 10.97 55.56 0.61 -20.53 16 19 Si 0.92 20.14 29.57 -169.99 -5.03 15.12 16 20 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.11 1.52 5.78 -8.38 -0.05 1.47 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 28 H 0.06 0.49 7.48 -51.93 -0.39 0.10 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.09 1.80 5.41 -52.49 -0.28 1.52 16 35 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.12 3.20 6.47 -52.49 -0.34 2.86 16 38 H 0.28 6.82 8.29 -40.82 -0.34 6.48 16 39 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 40 H 0.08 1.14 7.12 -51.93 -0.37 0.77 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -31.18 325.76 -9.16 -40.34 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.91 Total: 3.22 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -3.14 Total: -14.90 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.08 Total: -33.72 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.08 Total: -14.96 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.18 -9.16 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601367035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.068 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds