Wall clock time and date at job start Mon Mar 30 2020 01:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 C 1.53001 * 109.47126 * 120.00255 * 2 1 3 5 5 H 1.08998 * 112.96508 * 65.65551 * 4 2 1 6 6 C 1.53942 * 113.76820 * 293.97326 * 4 2 1 7 7 C 1.53944 * 86.29034 * 221.98051 * 6 4 2 8 8 N 1.47577 * 86.11665 * 23.60976 * 7 6 4 9 9 C 1.34778 * 134.49149 * 155.36222 * 8 7 6 10 10 O 1.21608 * 119.99968 * 185.27541 * 9 8 7 11 11 C 1.47435 * 120.00135 * 5.27231 * 9 8 7 12 12 C 1.39223 * 120.28166 * 24.99518 * 11 9 8 13 13 C 1.38224 * 120.08733 * 179.74471 * 12 11 9 14 14 C 1.38825 * 120.67817 * 0.56226 * 13 12 11 15 15 C 1.37600 * 120.56975 * 359.69916 * 14 13 12 16 16 C 1.40703 * 119.87937 * 0.02562 * 15 14 13 17 17 C 1.40890 * 120.32454 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99962 * 214.01280 * 17 16 15 19 19 C 1.40272 * 120.00216 * 34.00622 * 17 16 15 20 20 N 1.30628 * 120.00056 * 6.07767 * 19 17 16 21 21 Si 1.86803 * 120.00063 * 186.07158 * 19 17 16 22 22 H 1.48497 * 109.47193 * 59.99812 * 21 19 17 23 23 H 1.48504 * 109.47295 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47040 * 300.00032 * 21 19 17 25 25 H 1.08996 * 109.47443 * 299.99571 * 1 2 3 26 26 H 1.08998 * 109.47104 * 60.00082 * 1 2 3 27 27 H 1.09005 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47417 * 240.00418 * 2 1 3 29 29 H 1.09001 * 109.47435 * 184.74704 * 3 2 1 30 30 H 1.08990 * 109.47312 * 304.75604 * 3 2 1 31 31 H 1.09008 * 109.46775 * 64.75224 * 3 2 1 32 32 H 1.08998 * 113.74397 * 336.32456 * 6 4 2 33 33 H 1.09001 * 113.73998 * 107.63510 * 6 4 2 34 34 H 1.09007 * 113.76957 * 137.91136 * 7 6 4 35 35 H 1.08998 * 113.77114 * 269.30417 * 7 6 4 36 36 H 1.07998 * 119.95293 * 0.02737 * 12 11 9 37 37 H 1.08004 * 119.65821 * 180.30091 * 13 12 11 38 38 H 1.07996 * 119.71648 * 179.71440 * 14 13 12 39 39 H 1.08000 * 120.05701 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00209 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7917 -1.7826 1.2587 6 6 1.7071 0.0056 2.5647 7 6 3.1385 -0.3491 3.0064 8 7 3.4530 -0.4381 1.5673 9 6 4.5786 -0.3117 0.8369 10 8 4.5224 -0.3450 -0.3775 11 6 5.8781 -0.1328 1.5100 12 6 6.0642 -0.5932 2.8107 13 6 7.2857 -0.4281 3.4361 14 6 8.3350 0.2059 2.7846 15 6 8.1797 0.6763 1.5009 16 6 6.9481 0.5158 0.8398 17 6 6.7786 0.9944 -0.4745 18 1 5.8206 1.3820 -0.7887 19 6 7.8538 0.9677 -1.3748 20 7 8.9761 0.3921 -1.0350 21 14 7.6809 1.7552 -3.0599 22 1 7.3808 3.2009 -2.9022 23 1 8.9490 1.5917 -3.8153 24 1 6.5751 1.0982 -3.8021 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1267 1.4437 -0.0850 30 1 1.6088 1.9803 -0.8442 31 1 1.7478 1.9312 0.9296 32 1 1.5375 1.0755 2.4442 33 1 0.9319 -0.4852 3.1533 34 1 3.6540 0.4629 3.5194 35 1 3.2129 -1.3010 3.5321 36 1 5.2544 -1.0841 3.3300 37 1 7.4240 -0.7923 4.4434 38 1 9.2815 0.3306 3.2896 39 1 9.0017 1.1679 1.0018 40 1 9.7196 0.3732 -1.6577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601410016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:45 Heat of formation + Delta-G solvation = 11.570331 kcal Electronic energy + Delta-G solvation = -21573.219705 eV Core-core repulsion = 18546.559142 eV Total energy + Delta-G solvation = -3026.660563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.11705 -37.76491 -36.17763 -34.18469 -33.60121 -30.19427 -29.72536 -28.40495 -26.84741 -25.69736 -25.24295 -22.72494 -21.30809 -20.93316 -19.79242 -17.92892 -17.18872 -16.20072 -15.82666 -15.43558 -15.03372 -14.37469 -14.26435 -13.53693 -13.37281 -13.16353 -12.97629 -12.62933 -12.52016 -12.10986 -11.93654 -11.75539 -11.55925 -11.36194 -11.19097 -11.08399 -10.99779 -10.80552 -10.60595 -10.52448 -10.43225 -10.09093 -9.85039 -9.60320 -9.23943 -8.45186 -7.96466 -7.54079 -7.32578 -6.73704 -4.36389 2.43163 2.85577 3.10515 3.15784 3.27377 3.50398 3.99896 4.12431 4.62946 4.68821 5.06547 5.16270 5.21689 5.36568 5.39805 5.62759 5.65253 5.68639 5.75979 5.85920 5.89598 6.02249 6.07538 6.10001 6.12716 6.31074 6.35387 6.39619 6.49093 6.65861 6.80906 6.89046 7.02490 7.14411 7.26321 7.50274 7.68335 7.94673 8.02372 8.20314 8.49979 8.67648 8.83675 8.90804 9.41322 10.20634 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.007440 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.315057 B = 3762.686391 C = 5235.435742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.144 4.144 4 C 0.139 3.861 5 H 0.080 0.920 6 C -0.154 4.154 7 C 0.104 3.896 8 N -0.647 5.647 9 C 0.592 3.408 10 O -0.529 6.529 11 C -0.253 4.253 12 C -0.061 4.061 13 C -0.247 4.247 14 C -0.095 4.095 15 C -0.151 4.151 16 C 0.146 3.854 17 C -0.417 4.417 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.797 5.797 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.262 1.262 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.121 0.879 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 0.333 5.452 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.201 4.201 4 C 0.035 3.965 5 H 0.098 0.902 6 C -0.192 4.192 7 C -0.019 4.019 8 N -0.385 5.385 9 C 0.388 3.612 10 O -0.406 6.406 11 C -0.257 4.257 12 C -0.080 4.080 13 C -0.267 4.267 14 C -0.114 4.114 15 C -0.170 4.170 16 C 0.142 3.858 17 C -0.446 4.446 18 H 0.106 0.894 19 C -0.145 4.145 20 N -0.423 5.423 21 Si 0.740 3.260 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.186 1.186 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.139 0.861 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.826 0.283 4.540 11.743 hybrid contribution 0.160 -0.004 -0.606 0.626 sum -10.666 0.279 3.934 11.372 Atomic orbital electron populations 1.21756 0.95198 1.01289 1.01591 1.21126 0.94717 0.97343 0.98165 1.21854 1.03205 0.94777 1.00227 1.22665 0.81249 0.98030 0.94520 0.90222 1.23717 0.96803 1.01971 0.96661 1.22986 0.93345 1.00814 0.84771 1.50193 1.06836 1.73864 1.07640 1.18163 0.82051 0.74853 0.86136 1.90705 1.85753 1.50721 1.13457 1.19513 0.95052 1.14332 0.96832 1.20811 0.96109 0.97602 0.93473 1.20293 0.94856 1.11786 0.99723 1.20814 0.96776 0.98367 0.95458 1.21382 0.98882 1.03609 0.93103 1.17459 0.89589 0.86484 0.92232 1.19729 0.97265 1.32646 0.94919 0.89369 1.25999 0.94069 0.93278 1.01201 1.69684 1.03321 1.32350 1.36941 0.86235 0.78475 0.80318 0.80995 1.18859 1.20396 1.18626 0.92727 0.92750 0.93005 0.90379 0.90989 0.93612 0.93261 0.88867 0.90745 0.90191 0.90813 0.88822 0.89228 0.89154 0.86139 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.06 37.16 0.34 -1.21 16 2 C -0.09 -1.40 2.53 -90.62 -0.23 -1.63 16 3 C -0.14 -2.31 8.53 37.16 0.32 -1.99 16 4 C 0.14 2.03 4.17 -66.86 -0.28 1.75 16 5 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.15 -1.78 6.96 -25.81 -0.18 -1.96 16 7 C 0.10 1.46 6.29 -2.98 -0.02 1.44 16 8 N -0.65 -11.87 2.90 -172.48 -0.50 -12.37 16 9 C 0.59 14.02 6.45 -12.51 -0.08 13.94 16 10 O -0.53 -14.14 13.20 5.27 0.07 -14.07 16 11 C -0.25 -6.32 5.87 -104.37 -0.61 -6.93 16 12 C -0.06 -1.35 8.82 -39.22 -0.35 -1.70 16 13 C -0.25 -5.37 10.03 -39.37 -0.39 -5.77 16 14 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 15 C -0.15 -3.89 8.62 -38.88 -0.34 -4.22 16 16 C 0.15 3.99 5.53 -106.54 -0.59 3.40 16 17 C -0.42 -11.59 7.52 -37.81 -0.28 -11.88 16 18 H 0.09 2.51 6.55 -52.48 -0.34 2.17 16 19 C 0.07 1.89 5.31 -17.30 -0.09 1.80 16 20 N -0.80 -21.12 10.97 55.56 0.61 -20.51 16 21 Si 0.92 20.07 29.57 -169.99 -5.03 15.04 16 22 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 25 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 29 H 0.07 1.47 5.53 -51.93 -0.29 1.18 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.70 6.03 -51.92 -0.31 0.39 16 32 H 0.09 1.09 6.02 -51.93 -0.31 0.77 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.14 7.86 -51.93 -0.41 0.73 16 35 H 0.07 0.91 7.76 -51.93 -0.40 0.50 16 36 H 0.09 1.77 5.56 -52.49 -0.29 1.48 16 37 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.12 3.18 6.46 -52.49 -0.34 2.84 16 40 H 0.28 6.81 8.29 -40.82 -0.34 6.47 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -30.27 316.24 -8.87 -39.15 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.61 Total: 5.54 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -3.18 Total: -17.56 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.11 Total: -32.87 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.07 Total: -14.07 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.03 Total: 15.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.27 -8.87 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601410016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.718 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds