Wall clock time and date at job start Mon Mar 30 2020 01:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 C 1.53001 * 109.47126 * 120.00255 * 2 1 3 5 5 H 1.08998 * 112.96508 * 65.65551 * 4 2 1 6 6 C 1.53942 * 113.76820 * 293.97326 * 4 2 1 7 7 C 1.53944 * 86.29034 * 221.98051 * 6 4 2 8 8 N 1.47577 * 86.11665 * 23.60976 * 7 6 4 9 9 C 1.34778 * 134.49149 * 155.36222 * 8 7 6 10 10 O 1.21608 * 119.99968 * 185.27541 * 9 8 7 11 11 C 1.47435 * 120.00135 * 5.27231 * 9 8 7 12 12 C 1.39223 * 120.28166 * 24.99518 * 11 9 8 13 13 C 1.38224 * 120.08733 * 179.74471 * 12 11 9 14 14 C 1.38825 * 120.67817 * 0.56226 * 13 12 11 15 15 C 1.37600 * 120.56975 * 359.69916 * 14 13 12 16 16 C 1.40703 * 119.87937 * 0.02562 * 15 14 13 17 17 C 1.40890 * 120.32454 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99962 * 214.01280 * 17 16 15 19 19 C 1.40272 * 120.00216 * 34.00622 * 17 16 15 20 20 N 1.30628 * 120.00056 * 6.07767 * 19 17 16 21 21 Si 1.86803 * 120.00063 * 186.07158 * 19 17 16 22 22 H 1.48497 * 109.47193 * 59.99812 * 21 19 17 23 23 H 1.48504 * 109.47295 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47040 * 300.00032 * 21 19 17 25 25 H 1.08996 * 109.47443 * 299.99571 * 1 2 3 26 26 H 1.08998 * 109.47104 * 60.00082 * 1 2 3 27 27 H 1.09005 * 109.47022 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47417 * 240.00418 * 2 1 3 29 29 H 1.09001 * 109.47435 * 184.74704 * 3 2 1 30 30 H 1.08990 * 109.47312 * 304.75604 * 3 2 1 31 31 H 1.09008 * 109.46775 * 64.75224 * 3 2 1 32 32 H 1.08998 * 113.74397 * 336.32456 * 6 4 2 33 33 H 1.09001 * 113.73998 * 107.63510 * 6 4 2 34 34 H 1.09007 * 113.76957 * 137.91136 * 7 6 4 35 35 H 1.08998 * 113.77114 * 269.30417 * 7 6 4 36 36 H 1.07998 * 119.95293 * 0.02737 * 12 11 9 37 37 H 1.08004 * 119.65821 * 180.30091 * 13 12 11 38 38 H 1.07996 * 119.71648 * 179.71440 * 14 13 12 39 39 H 1.08000 * 120.05701 * 180.02562 * 15 14 13 40 40 H 0.96996 * 120.00209 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7917 -1.7826 1.2587 6 6 1.7071 0.0056 2.5647 7 6 3.1385 -0.3491 3.0064 8 7 3.4530 -0.4381 1.5673 9 6 4.5786 -0.3117 0.8369 10 8 4.5224 -0.3450 -0.3775 11 6 5.8781 -0.1328 1.5100 12 6 6.0642 -0.5932 2.8107 13 6 7.2857 -0.4281 3.4361 14 6 8.3350 0.2059 2.7846 15 6 8.1797 0.6763 1.5009 16 6 6.9481 0.5158 0.8398 17 6 6.7786 0.9944 -0.4745 18 1 5.8206 1.3820 -0.7887 19 6 7.8538 0.9677 -1.3748 20 7 8.9761 0.3921 -1.0350 21 14 7.6809 1.7552 -3.0599 22 1 7.3808 3.2009 -2.9022 23 1 8.9490 1.5917 -3.8153 24 1 6.5751 1.0982 -3.8021 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1267 1.4437 -0.0850 30 1 1.6088 1.9803 -0.8442 31 1 1.7478 1.9312 0.9296 32 1 1.5375 1.0755 2.4442 33 1 0.9319 -0.4852 3.1533 34 1 3.6540 0.4629 3.5194 35 1 3.2129 -1.3010 3.5321 36 1 5.2544 -1.0841 3.3300 37 1 7.4240 -0.7923 4.4434 38 1 9.2815 0.3306 3.2896 39 1 9.0017 1.1679 1.0018 40 1 9.7196 0.3732 -1.6577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601410016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:44 Heat of formation + Delta-G solvation = -5.602374 kcal Electronic energy + Delta-G solvation = -21573.964369 eV Core-core repulsion = 18546.559142 eV Total energy + Delta-G solvation = -3027.405227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.49447 -39.48145 -37.96657 -35.67504 -35.23258 -31.97291 -31.59372 -29.88414 -27.98066 -27.28771 -26.71672 -24.27881 -22.78824 -22.61429 -21.27491 -19.48101 -18.97002 -17.74376 -17.26116 -16.99958 -16.70927 -16.01142 -15.78022 -15.25111 -14.84465 -14.65834 -14.43747 -14.21088 -13.94689 -13.56570 -13.34587 -13.16347 -12.98150 -12.88145 -12.85246 -12.62133 -12.47287 -12.28741 -12.18223 -11.83726 -11.80601 -11.70314 -11.43974 -11.16565 -11.14418 -10.20539 -9.53807 -9.35175 -9.17689 -8.66192 -6.38087 0.56935 1.00574 1.28079 1.39665 1.47164 2.13914 2.17630 2.35194 2.75948 3.53516 3.69435 3.94190 3.98849 4.05579 4.19862 4.30155 4.41821 4.47624 4.59371 4.62196 4.71834 4.72239 4.77567 4.83079 4.96522 5.08184 5.09312 5.10157 5.23306 5.24995 5.28968 5.35910 5.38465 5.51693 5.58246 5.63508 5.84120 6.08091 6.08812 6.32237 6.62467 6.84726 6.94684 7.04881 7.69213 8.30226 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.007440 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.315057 B = 3762.686391 C = 5235.435742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 C -0.139 4.139 4 C 0.128 3.872 5 H 0.097 0.903 6 C -0.126 4.126 7 C 0.095 3.905 8 N -0.653 5.653 9 C 0.583 3.417 10 O -0.578 6.578 11 C -0.271 4.271 12 C -0.059 4.059 13 C -0.236 4.236 14 C -0.094 4.094 15 C -0.178 4.178 16 C 0.112 3.888 17 C -0.455 4.455 18 H 0.063 0.937 19 C 0.032 3.968 20 N -0.828 5.828 21 Si 0.976 3.024 22 H -0.256 1.256 23 H -0.256 1.256 24 H -0.277 1.277 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.444 -0.376 8.289 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.114 4.114 3 C -0.196 4.196 4 C 0.025 3.975 5 H 0.114 0.886 6 C -0.163 4.163 7 C -0.026 4.026 8 N -0.390 5.390 9 C 0.378 3.622 10 O -0.459 6.459 11 C -0.275 4.275 12 C -0.078 4.078 13 C -0.254 4.254 14 C -0.112 4.112 15 C -0.198 4.198 16 C 0.109 3.891 17 C -0.484 4.484 18 H 0.081 0.919 19 C -0.181 4.181 20 N -0.455 5.455 21 Si 0.797 3.203 22 H -0.180 1.180 23 H -0.180 1.180 24 H -0.202 1.202 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.138 0.862 39 H 0.121 0.879 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.045 -0.426 7.442 15.025 hybrid contribution 0.728 0.131 -1.267 1.467 sum -12.317 -0.295 6.175 13.782 Atomic orbital electron populations 1.21676 0.91543 1.02709 1.02798 1.21107 0.97604 0.95733 0.96933 1.21791 0.99812 0.96427 1.01566 1.23086 0.78777 0.99508 0.96097 0.88573 1.23597 0.96423 1.02042 0.94250 1.23397 0.94654 1.02313 0.82272 1.50279 1.06877 1.71818 1.09985 1.18096 0.83295 0.75018 0.85794 1.90662 1.86772 1.52942 1.15557 1.19968 0.95609 1.13787 0.98183 1.21186 0.97549 0.96756 0.92296 1.20813 0.93842 1.09581 1.01209 1.21186 0.98596 0.97116 0.94316 1.21325 0.98278 1.05523 0.94651 1.17848 0.91173 0.87444 0.92637 1.19678 0.96912 1.35472 0.96355 0.91901 1.26685 0.93630 0.93558 1.04275 1.69718 1.03901 1.33579 1.38279 0.85361 0.78600 0.79563 0.76770 1.17966 1.18011 1.20240 0.90468 0.92621 0.91470 0.94346 0.96084 0.93150 0.91097 0.88779 0.86115 0.90440 0.87994 0.85162 0.84957 0.86201 0.87908 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.06 71.98 0.65 -1.84 16 2 C -0.09 -2.75 2.53 -10.79 -0.03 -2.78 16 3 C -0.14 -4.56 8.53 71.98 0.61 -3.94 16 4 C 0.13 3.45 4.17 45.09 0.19 3.64 16 5 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 6 C -0.13 -2.33 6.96 31.25 0.22 -2.12 16 7 C 0.10 2.31 6.29 86.48 0.54 2.85 16 8 N -0.65 -23.41 2.90 -817.85 -2.38 -25.79 16 9 C 0.58 28.66 6.45 86.67 0.56 29.22 16 10 O -0.58 -33.21 13.20 -4.06 -0.05 -33.26 16 11 C -0.27 -13.88 5.87 -19.70 -0.12 -14.00 16 12 C -0.06 -2.51 8.82 22.50 0.20 -2.31 16 13 C -0.24 -9.53 10.03 22.41 0.22 -9.30 16 14 C -0.09 -4.20 10.01 22.26 0.22 -3.98 16 15 C -0.18 -9.55 8.62 22.72 0.20 -9.35 16 16 C 0.11 6.46 5.53 -21.11 -0.12 6.34 16 17 C -0.45 -27.28 7.52 23.41 0.18 -27.11 16 18 H 0.06 3.95 6.55 -2.91 -0.02 3.93 16 19 C 0.03 1.80 5.31 85.37 0.45 2.26 16 20 N -0.83 -46.19 10.97 21.88 0.24 -45.95 16 21 Si 0.98 43.65 29.57 68.60 2.03 45.68 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 25 H 0.08 1.16 7.65 -2.39 -0.02 1.14 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.04 1.41 8.05 -2.38 -0.02 1.39 16 29 H 0.02 0.89 5.53 -2.39 -0.01 0.88 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.95 6.03 -2.38 -0.01 1.93 16 32 H 0.09 1.78 6.02 -2.39 -0.01 1.77 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.94 7.86 -2.38 -0.02 1.93 16 35 H 0.10 1.96 7.76 -2.39 -0.02 1.94 16 36 H 0.13 4.43 5.56 -2.91 -0.02 4.41 16 37 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.10 5.75 6.46 -2.91 -0.02 5.73 16 40 H 0.29 14.56 8.29 -92.71 -0.77 13.79 16 Total: -1.00 -73.82 316.24 4.86 -68.96 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 1.04 Total: 22.77 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 3.99 Total: -32.41 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.14 Total: -71.73 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.05 Total: -33.26 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -73.82 4.86 -68.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601410016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.358 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds