Wall clock time and date at job start Mon Mar 30 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.53007 * 109.46662 * 119.99452 * 2 1 3 5 5 H 1.08995 * 112.78185 * 303.89133 * 4 2 1 6 6 C 1.53757 * 113.55010 * 74.75122 * 4 2 1 7 7 C 1.53491 * 83.26142 * 140.98409 * 6 4 2 8 8 N 1.47070 * 87.98436 * 333.76095 * 7 6 4 9 9 C 1.34778 * 136.05658 * 207.09119 * 8 7 6 10 10 O 1.21608 * 119.99799 * 186.06717 * 9 8 7 11 11 C 1.47425 * 120.00209 * 6.05984 * 9 8 7 12 12 C 1.39225 * 120.28384 * 330.35375 * 11 9 8 13 13 C 1.38225 * 120.09458 * 179.97438 * 12 11 9 14 14 C 1.38829 * 120.67345 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.57095 * 359.97438 * 14 13 12 16 16 C 1.40712 * 119.88401 * 0.02562 * 15 14 13 17 17 C 1.40889 * 120.32887 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00116 * 159.26115 * 17 16 15 19 19 C 1.40271 * 119.99824 * 339.25764 * 17 16 15 20 20 N 1.30628 * 119.99860 * 153.27779 * 19 17 16 21 21 Si 1.86797 * 120.00339 * 333.28152 * 19 17 16 22 22 H 1.48494 * 109.47321 * 85.04418 * 21 19 17 23 23 H 1.48502 * 109.47216 * 205.04347 * 21 19 17 24 24 H 1.48502 * 109.46969 * 325.04174 * 21 19 17 25 25 H 1.09003 * 109.46898 * 300.00901 * 1 2 3 26 26 H 1.09005 * 109.47029 * 60.00221 * 1 2 3 27 27 H 1.08997 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47196 * 239.99267 * 2 1 3 29 29 H 1.09002 * 109.47265 * 204.90577 * 3 2 1 30 30 H 1.09004 * 109.46884 * 324.89879 * 3 2 1 31 31 H 1.08994 * 109.47409 * 84.90035 * 3 2 1 32 32 H 1.09005 * 114.39862 * 27.41845 * 6 4 2 33 33 H 1.09002 * 114.08519 * 254.52731 * 6 4 2 34 34 H 1.09005 * 113.47019 * 218.98487 * 7 6 4 35 35 H 1.09005 * 113.52202 * 88.54478 * 7 6 4 36 36 H 1.07999 * 119.95577 * 0.25360 * 12 11 9 37 37 H 1.07993 * 119.66420 * 180.02562 * 13 12 11 38 38 H 1.08000 * 119.71292 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.05898 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00537 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6522 -0.2910 2.1728 6 6 1.8951 -2.2503 1.1782 7 6 3.2641 -2.2311 1.8720 8 7 3.4978 -0.9143 1.2601 9 6 4.5745 -0.1976 0.8812 10 8 4.4368 0.9452 0.4889 11 6 5.9191 -0.7990 0.9424 12 6 6.2095 -1.7743 1.8926 13 6 7.4713 -2.3359 1.9462 14 6 8.4620 -1.9377 1.0588 15 6 8.2052 -0.9761 0.1087 16 6 6.9289 -0.3886 0.0330 17 6 6.6558 0.5972 -0.9358 18 1 5.6354 0.8048 -1.2223 19 6 7.7093 1.3091 -1.5283 20 7 7.5670 1.8094 -2.7265 21 14 9.3157 1.5416 -0.6038 22 1 10.1858 0.3574 -0.8178 23 1 10.0038 2.7583 -1.1052 24 1 9.0347 1.6939 0.8464 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.0400 1.4743 -0.4328 30 1 1.3685 2.0653 -0.5910 31 1 2.0751 1.8155 1.0235 32 1 1.9120 -2.6576 0.1673 33 1 1.0882 -2.6498 1.7926 34 1 3.9439 -3.0036 1.5125 35 1 3.2002 -2.1990 2.9597 36 1 5.4464 -2.0957 2.5860 37 1 7.6888 -3.0921 2.6858 38 1 9.4427 -2.3865 1.1148 39 1 8.9819 -0.6729 -0.5777 40 1 8.2955 2.3014 -3.1364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601410017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:49 Heat of formation + Delta-G solvation = 24.943389 kcal Electronic energy + Delta-G solvation = -21564.064781 eV Core-core repulsion = 18537.984117 eV Total energy + Delta-G solvation = -3026.080664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.17027 -37.92985 -36.34616 -34.32091 -33.76450 -30.53829 -30.35885 -28.65040 -26.66645 -25.42461 -25.24217 -22.72428 -21.46466 -20.87957 -20.04554 -18.47729 -17.44963 -16.69979 -15.67197 -15.28852 -15.06283 -14.33293 -14.14455 -13.94805 -13.65276 -13.22652 -12.84915 -12.76395 -12.49236 -12.13796 -12.01655 -11.94756 -11.88848 -11.66760 -11.49766 -11.24993 -10.98009 -10.77609 -10.52960 -10.40500 -10.24673 -10.02341 -9.83659 -9.61414 -9.06697 -8.36185 -8.02015 -7.75873 -7.64822 -7.11212 -4.50885 2.24111 2.65106 3.05178 3.13848 3.28784 3.49887 3.88029 3.96126 4.44514 4.56640 5.02055 5.19298 5.23681 5.37999 5.41711 5.52584 5.62630 5.66421 5.75493 5.86432 5.91840 5.94680 6.06283 6.08971 6.16299 6.25697 6.32920 6.36956 6.50678 6.59682 6.70599 6.79320 6.82948 7.10119 7.25452 7.34976 7.55023 7.68797 7.82611 8.06771 8.32304 8.49341 8.66324 8.78208 9.37664 9.85523 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.006935 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.564380 B = 4036.707592 C = 5184.011505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.159 4.159 4 C 0.139 3.861 5 H 0.080 0.920 6 C -0.154 4.154 7 C 0.099 3.901 8 N -0.648 5.648 9 C 0.597 3.403 10 O -0.521 6.521 11 C -0.253 4.253 12 C -0.037 4.037 13 C -0.273 4.273 14 C -0.056 4.056 15 C -0.255 4.255 16 C 0.117 3.883 17 C -0.397 4.397 18 H 0.111 0.889 19 C 0.085 3.915 20 N -0.773 5.773 21 Si 0.918 3.082 22 H -0.260 1.260 23 H -0.290 1.290 24 H -0.248 1.248 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 -6.127 5.797 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.215 4.215 4 C 0.035 3.965 5 H 0.097 0.903 6 C -0.192 4.192 7 C -0.025 4.025 8 N -0.386 5.386 9 C 0.394 3.606 10 O -0.399 6.399 11 C -0.258 4.258 12 C -0.056 4.056 13 C -0.292 4.292 14 C -0.075 4.075 15 C -0.273 4.273 16 C 0.113 3.887 17 C -0.423 4.423 18 H 0.129 0.871 19 C -0.139 4.139 20 N -0.394 5.394 21 Si 0.744 3.256 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.171 1.171 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.800 -5.180 5.248 10.734 hybrid contribution 0.716 0.061 0.433 0.839 sum -7.084 -5.119 5.682 10.424 Atomic orbital electron populations 1.21782 0.95319 1.01151 1.01538 1.21280 0.94884 0.98065 0.97359 1.22368 1.04209 0.93429 1.01522 1.22650 0.81452 0.94493 0.97897 0.90258 1.23562 0.97361 0.96287 1.01973 1.22830 0.95417 0.86781 0.97438 1.49825 1.05340 1.19559 1.63853 1.18001 0.82608 0.84446 0.75566 1.90563 1.84602 1.17259 1.47486 1.19173 0.93880 1.07895 1.04823 1.20861 0.95673 0.93261 0.95780 1.20195 0.94922 1.08316 1.05769 1.20678 0.97007 0.95534 0.94257 1.21290 0.98230 1.03703 1.04118 1.17372 0.89976 0.91881 0.89500 1.19969 0.96989 1.12918 1.12379 0.87086 1.26459 1.00910 0.93074 0.93483 1.69664 1.34555 1.23372 1.11807 0.86425 0.80055 0.76810 0.82346 1.18663 1.21685 1.17093 0.92972 0.92741 0.92977 0.91176 0.87493 0.94793 0.93778 0.88953 0.90193 0.90307 0.90783 0.88588 0.88903 0.88911 0.87271 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.99 37.16 0.33 -1.31 16 2 C -0.10 -1.48 2.73 -90.62 -0.25 -1.73 16 3 C -0.16 -2.88 8.02 37.16 0.30 -2.58 16 4 C 0.14 2.04 3.26 -72.25 -0.24 1.81 16 5 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.15 -1.79 7.76 -26.08 -0.20 -1.99 16 7 C 0.10 1.36 6.26 -8.50 -0.05 1.31 16 8 N -0.65 -11.84 3.55 -178.54 -0.63 -12.48 16 9 C 0.60 13.86 7.38 -12.52 -0.09 13.77 16 10 O -0.52 -13.46 10.41 5.27 0.05 -13.40 16 11 C -0.25 -6.13 5.87 -104.37 -0.61 -6.74 16 12 C -0.04 -0.78 8.69 -39.22 -0.34 -1.12 16 13 C -0.27 -5.63 10.03 -39.37 -0.39 -6.03 16 14 C -0.06 -1.22 10.01 -39.60 -0.40 -1.62 16 15 C -0.25 -6.20 7.50 -38.88 -0.29 -6.49 16 16 C 0.12 3.07 5.29 -106.54 -0.56 2.51 16 17 C -0.40 -11.07 8.45 -37.82 -0.32 -11.39 16 18 H 0.11 3.36 6.16 -52.49 -0.32 3.04 16 19 C 0.08 2.23 5.33 -17.30 -0.09 2.14 16 20 N -0.77 -20.34 13.92 55.56 0.77 -19.57 16 21 Si 0.92 20.82 25.00 -169.99 -4.25 16.57 16 22 H -0.26 -5.61 6.01 56.52 0.34 -5.27 16 23 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.25 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.05 0.52 7.95 -51.93 -0.41 0.11 16 28 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 29 H 0.11 2.42 4.97 -52.58 -0.26 2.15 16 30 H 0.03 0.55 7.89 -51.93 -0.41 0.14 16 31 H 0.04 0.81 7.91 -51.93 -0.41 0.40 16 32 H 0.09 1.10 8.12 -51.93 -0.42 0.68 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.10 7.27 -51.93 -0.38 0.73 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.73 5.76 -52.49 -0.30 1.43 16 37 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 2.62 3.87 -52.49 -0.20 2.42 16 40 H 0.29 6.81 8.29 -40.82 -0.34 6.47 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -29.31 311.81 -8.27 -37.58 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.70 Total: 6.06 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -3.21 Total: -19.46 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.14 Total: -32.04 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.05 Total: -13.40 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.25 Total: 16.57 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.31 -8.27 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601410017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.520 kcal (2) G-P(sol) polarization free energy of solvation -29.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds