Wall clock time and date at job start Mon Mar 30 2020 01:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.53007 * 109.46662 * 119.99452 * 2 1 3 5 5 H 1.08995 * 112.78185 * 303.89133 * 4 2 1 6 6 C 1.53757 * 113.55010 * 74.75122 * 4 2 1 7 7 C 1.53491 * 83.26142 * 140.98409 * 6 4 2 8 8 N 1.47070 * 87.98436 * 333.76095 * 7 6 4 9 9 C 1.34778 * 136.05658 * 207.09119 * 8 7 6 10 10 O 1.21608 * 119.99799 * 186.06717 * 9 8 7 11 11 C 1.47425 * 120.00209 * 6.05984 * 9 8 7 12 12 C 1.39225 * 120.28384 * 330.35375 * 11 9 8 13 13 C 1.38225 * 120.09458 * 179.97438 * 12 11 9 14 14 C 1.38829 * 120.67345 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.57095 * 359.97438 * 14 13 12 16 16 C 1.40712 * 119.88401 * 0.02562 * 15 14 13 17 17 C 1.40889 * 120.32887 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00116 * 159.26115 * 17 16 15 19 19 C 1.40271 * 119.99824 * 339.25764 * 17 16 15 20 20 N 1.30628 * 119.99860 * 153.27779 * 19 17 16 21 21 Si 1.86797 * 120.00339 * 333.28152 * 19 17 16 22 22 H 1.48494 * 109.47321 * 85.04418 * 21 19 17 23 23 H 1.48502 * 109.47216 * 205.04347 * 21 19 17 24 24 H 1.48502 * 109.46969 * 325.04174 * 21 19 17 25 25 H 1.09003 * 109.46898 * 300.00901 * 1 2 3 26 26 H 1.09005 * 109.47029 * 60.00221 * 1 2 3 27 27 H 1.08997 * 109.47514 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47196 * 239.99267 * 2 1 3 29 29 H 1.09002 * 109.47265 * 204.90577 * 3 2 1 30 30 H 1.09004 * 109.46884 * 324.89879 * 3 2 1 31 31 H 1.08994 * 109.47409 * 84.90035 * 3 2 1 32 32 H 1.09005 * 114.39862 * 27.41845 * 6 4 2 33 33 H 1.09002 * 114.08519 * 254.52731 * 6 4 2 34 34 H 1.09005 * 113.47019 * 218.98487 * 7 6 4 35 35 H 1.09005 * 113.52202 * 88.54478 * 7 6 4 36 36 H 1.07999 * 119.95577 * 0.25360 * 12 11 9 37 37 H 1.07993 * 119.66420 * 180.02562 * 13 12 11 38 38 H 1.08000 * 119.71292 * 179.97438 * 14 13 12 39 39 H 1.07999 * 120.05898 * 180.02562 * 15 14 13 40 40 H 0.97003 * 120.00537 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6522 -0.2910 2.1728 6 6 1.8951 -2.2503 1.1782 7 6 3.2641 -2.2311 1.8720 8 7 3.4978 -0.9143 1.2601 9 6 4.5745 -0.1976 0.8812 10 8 4.4368 0.9452 0.4889 11 6 5.9191 -0.7990 0.9424 12 6 6.2095 -1.7743 1.8926 13 6 7.4713 -2.3359 1.9462 14 6 8.4620 -1.9377 1.0588 15 6 8.2052 -0.9761 0.1087 16 6 6.9289 -0.3886 0.0330 17 6 6.6558 0.5972 -0.9358 18 1 5.6354 0.8048 -1.2223 19 6 7.7093 1.3091 -1.5283 20 7 7.5670 1.8094 -2.7265 21 14 9.3157 1.5416 -0.6038 22 1 10.1858 0.3574 -0.8178 23 1 10.0038 2.7583 -1.1052 24 1 9.0347 1.6939 0.8464 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.0400 1.4743 -0.4328 30 1 1.3685 2.0653 -0.5910 31 1 2.0751 1.8155 1.0235 32 1 1.9120 -2.6576 0.1673 33 1 1.0882 -2.6498 1.7926 34 1 3.9439 -3.0036 1.5125 35 1 3.2002 -2.1990 2.9597 36 1 5.4464 -2.0957 2.5860 37 1 7.6888 -3.0921 2.6858 38 1 9.4427 -2.3865 1.1148 39 1 8.9819 -0.6729 -0.5777 40 1 8.2955 2.3014 -3.1364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601410017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:48 Heat of formation + Delta-G solvation = 6.857628 kcal Electronic energy + Delta-G solvation = -21564.849038 eV Core-core repulsion = 18537.984117 eV Total energy + Delta-G solvation = -3026.864921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.54475 -39.60274 -38.07364 -35.77355 -35.46582 -32.36973 -32.06877 -30.08493 -27.94594 -27.11281 -26.56794 -24.30280 -23.17560 -22.22824 -21.46239 -19.92531 -19.34424 -18.26699 -17.40543 -16.75260 -16.54641 -15.89485 -15.82000 -15.49787 -15.21723 -14.65675 -14.51317 -14.21485 -13.87633 -13.79480 -13.46815 -13.38065 -13.21305 -13.06880 -12.84783 -12.78345 -12.52040 -12.35969 -12.20834 -11.88652 -11.70907 -11.61322 -11.44215 -11.02799 -10.86296 -10.09804 -9.58031 -9.53385 -9.35413 -9.02417 -6.48817 0.45852 0.83346 1.19630 1.34924 1.45340 2.03648 2.13313 2.25286 2.57569 3.47534 3.57649 3.83984 3.99181 4.07064 4.18278 4.26211 4.36734 4.42319 4.50283 4.61166 4.69251 4.70061 4.77157 4.79791 4.84333 4.97920 4.99402 5.01435 5.10602 5.16936 5.27089 5.32342 5.34210 5.50789 5.57626 5.68314 5.80493 5.90915 5.99686 6.21544 6.39066 6.71297 6.77605 7.04450 7.69751 8.01622 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019706 B = 0.006935 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.564380 B = 4036.707592 C = 5184.011505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.151 4.151 4 C 0.128 3.872 5 H 0.098 0.902 6 C -0.127 4.127 7 C 0.092 3.908 8 N -0.659 5.659 9 C 0.581 3.419 10 O -0.565 6.565 11 C -0.273 4.273 12 C -0.037 4.037 13 C -0.252 4.252 14 C -0.056 4.056 15 C -0.277 4.277 16 C 0.099 3.901 17 C -0.446 4.446 18 H 0.063 0.937 19 C 0.048 3.952 20 N -0.819 5.819 21 Si 0.972 3.028 22 H -0.237 1.237 23 H -0.272 1.272 24 H -0.266 1.266 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.044 0.956 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 -9.446 9.004 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 C -0.208 4.208 4 C 0.026 3.974 5 H 0.116 0.884 6 C -0.164 4.164 7 C -0.029 4.029 8 N -0.395 5.395 9 C 0.377 3.623 10 O -0.446 6.446 11 C -0.277 4.277 12 C -0.056 4.056 13 C -0.271 4.271 14 C -0.074 4.074 15 C -0.296 4.296 16 C 0.095 3.905 17 C -0.473 4.473 18 H 0.081 0.919 19 C -0.171 4.171 20 N -0.442 5.442 21 Si 0.794 3.206 22 H -0.162 1.162 23 H -0.198 1.198 24 H -0.190 1.190 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.105 0.895 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.384 -8.552 8.462 14.664 hybrid contribution 0.728 0.903 -0.373 1.218 sum -7.655 -7.650 8.090 13.512 Atomic orbital electron populations 1.21703 0.91758 1.03070 1.02208 1.21262 0.97744 0.95478 0.97019 1.22188 1.01750 0.96318 1.00592 1.23051 0.79122 0.97221 0.98051 0.88382 1.23480 0.97519 0.93008 1.02412 1.23235 0.96413 0.84046 0.99255 1.49901 1.05866 1.21017 1.62695 1.18075 0.83841 0.84409 0.76003 1.90583 1.85515 1.19335 1.49162 1.19642 0.94427 1.08543 1.05089 1.21249 0.97158 0.92021 0.95149 1.20803 0.93857 1.07402 1.05033 1.21151 0.99147 0.94130 0.93003 1.21403 0.97461 1.05103 1.05632 1.17688 0.91766 0.91514 0.89541 1.19762 0.95381 1.16382 1.15751 0.91886 1.27141 1.03578 0.92458 0.93947 1.69684 1.36121 1.25470 1.12968 0.85601 0.77010 0.78238 0.79716 1.16197 1.19816 1.19045 0.91638 0.92810 0.90365 0.93749 0.92509 0.93722 0.94494 0.89459 0.85435 0.90476 0.87568 0.84999 0.84461 0.85092 0.87492 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.99 71.98 0.65 -2.09 16 2 C -0.10 -2.95 2.73 -10.79 -0.03 -2.98 16 3 C -0.15 -5.89 8.02 71.98 0.58 -5.31 16 4 C 0.13 3.52 3.26 41.88 0.14 3.66 16 5 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 6 C -0.13 -2.42 7.76 31.01 0.24 -2.18 16 7 C 0.09 2.19 6.26 83.18 0.52 2.71 16 8 N -0.66 -23.70 3.55 -837.03 -2.97 -26.67 16 9 C 0.58 28.23 7.38 86.66 0.64 28.87 16 10 O -0.56 -31.89 10.41 -4.06 -0.04 -31.93 16 11 C -0.27 -13.41 5.87 -19.70 -0.12 -13.53 16 12 C -0.04 -1.47 8.69 22.50 0.20 -1.27 16 13 C -0.25 -9.24 10.03 22.41 0.22 -9.01 16 14 C -0.06 -2.24 10.01 22.26 0.22 -2.02 16 15 C -0.28 -13.41 7.50 22.72 0.17 -13.23 16 16 C 0.10 5.40 5.29 -21.11 -0.11 5.29 16 17 C -0.45 -27.09 8.45 23.41 0.20 -26.90 16 18 H 0.06 4.32 6.16 -2.91 -0.02 4.30 16 19 C 0.05 2.68 5.33 85.37 0.46 3.13 16 20 N -0.82 -46.51 13.92 21.88 0.30 -46.20 16 21 Si 0.97 44.36 25.00 68.60 1.72 46.08 16 22 H -0.24 -9.79 6.01 99.48 0.60 -9.20 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.15 8.12 -2.38 -0.02 1.13 16 27 H 0.08 1.27 7.95 -2.39 -0.02 1.25 16 28 H 0.04 1.57 8.13 -2.39 -0.02 1.55 16 29 H 0.06 2.86 4.97 -12.68 -0.06 2.80 16 30 H 0.04 1.55 7.89 -2.39 -0.02 1.53 16 31 H 0.04 1.42 7.91 -2.39 -0.02 1.41 16 32 H 0.09 1.81 8.12 -2.38 -0.02 1.79 16 33 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.87 7.27 -2.38 -0.02 1.86 16 35 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.13 4.17 5.76 -2.91 -0.02 4.15 16 37 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 38 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 39 H 0.11 5.12 3.87 -2.91 -0.01 5.11 16 40 H 0.30 15.01 8.29 -92.71 -0.77 14.24 16 Total: -1.00 -73.37 311.81 3.85 -69.52 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.88 Total: 24.06 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 3.97 Total: -34.86 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -2.67 Total: -72.87 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.04 Total: -31.93 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.72 Total: 46.08 kcal Total: -73.37 3.85 -69.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601410017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.375 kcal (2) G-P(sol) polarization free energy of solvation -73.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds