Wall clock time and date at job start Mon Mar 30 2020 01:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 119.99725 * 2 1 4 4 C 1.53005 * 109.47182 * 124.99703 * 3 2 1 5 5 C 1.52999 * 109.47074 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47191 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00009 * 179.97438 * 7 6 5 9 9 O 1.21609 * 120.00181 * 0.02562 * 8 7 6 10 10 C 1.47435 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.39235 * 120.28378 * 356.68142 * 10 8 7 12 12 C 1.38223 * 120.09183 * 180.28231 * 11 10 8 13 13 C 1.38824 * 120.67578 * 359.69536 * 12 11 10 14 14 C 1.37601 * 120.57302 * 0.02562 * 13 12 11 15 15 C 1.40712 * 119.87956 * 0.02562 * 14 13 12 16 16 C 1.40891 * 120.32906 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00234 * 145.79747 * 16 15 14 18 18 C 1.40273 * 119.99571 * 325.79352 * 16 15 14 19 19 N 1.30635 * 120.00253 * 340.74281 * 18 16 15 20 20 Si 1.86798 * 119.99912 * 160.74547 * 18 16 15 21 21 H 1.48507 * 109.47415 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47275 * 299.99863 * 20 18 16 23 23 H 1.48501 * 109.47305 * 59.99898 * 20 18 16 24 24 H 1.07996 * 119.99929 * 180.02562 * 1 2 3 25 25 H 1.07995 * 120.00171 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00171 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47311 * 4.99395 * 3 2 1 28 28 H 1.08999 * 109.46984 * 244.99237 * 3 2 1 29 29 H 1.09004 * 109.47249 * 59.99654 * 4 3 2 30 30 H 1.08999 * 109.46781 * 299.99658 * 4 3 2 31 31 H 1.08999 * 109.46806 * 59.99763 * 5 4 3 32 32 H 1.09005 * 109.47011 * 299.99982 * 5 4 3 33 33 H 1.09004 * 109.47250 * 59.99698 * 6 5 4 34 34 H 1.09005 * 109.47069 * 299.99874 * 6 5 4 35 35 H 0.96994 * 119.99831 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.94893 * 359.97438 * 11 10 8 37 37 H 1.07988 * 119.65914 * 179.72052 * 12 11 10 38 38 H 1.08002 * 119.71756 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.06577 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00071 * 354.83739 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6580 1.1813 6 6 4.7723 2.6859 2.3626 7 7 5.5056 3.9541 2.3619 8 6 6.4224 4.2029 3.3179 9 8 6.6413 3.3745 4.1808 10 6 7.1600 5.4795 3.3175 11 6 6.9645 6.4030 2.2940 12 6 7.6624 7.5961 2.2945 13 6 8.5585 7.8920 3.3127 14 6 8.7688 7.0018 4.3406 15 6 8.0717 5.7797 4.3632 16 6 8.2801 4.8611 5.4109 17 1 7.4622 4.2515 5.7653 18 6 9.5502 4.7382 5.9936 19 7 10.6060 5.1674 5.3552 20 14 9.7317 3.9607 7.6823 21 1 11.1652 3.9488 8.0704 22 1 8.9561 4.7467 8.6752 23 1 9.2184 2.5677 7.6438 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 3.7400 0.5067 1.0922 30 1 2.4771 1.2358 2.1130 31 1 3.0957 3.4847 1.2705 32 1 4.3583 2.7551 0.2499 33 1 5.4770 1.8591 2.2729 34 1 4.2148 2.5886 3.2942 35 1 5.3313 4.6147 1.6734 36 1 6.2702 6.1847 1.4961 37 1 7.5087 8.3054 1.4949 38 1 9.0953 8.8291 3.2978 39 1 9.4675 7.2406 5.1287 40 1 10.5220 5.5022 4.4487 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601457509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:57 Heat of formation + Delta-G solvation = -42.951297 kcal Electronic energy + Delta-G solvation = -19878.527593 eV Core-core repulsion = 16849.502795 eV Total energy + Delta-G solvation = -3029.024798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81537 -38.89419 -37.53320 -36.05368 -35.53665 -33.33579 -31.79737 -31.19130 -28.99090 -27.09673 -25.01571 -23.62640 -22.71936 -22.28717 -21.04119 -20.60792 -19.92180 -18.08423 -16.97359 -16.91277 -16.52309 -16.12788 -15.86235 -15.72886 -15.40928 -15.29668 -14.53910 -14.50187 -14.09071 -13.92977 -13.73114 -13.35184 -12.92835 -12.89694 -12.71530 -12.50266 -12.36292 -12.10141 -12.02123 -11.93578 -11.71354 -11.52535 -11.42706 -10.96653 -10.37911 -10.17163 -10.00532 -9.60887 -9.49754 -9.10839 -6.46743 0.39816 0.90402 1.42547 1.45942 1.61547 1.76345 2.24895 2.30693 2.44511 2.73927 3.55828 3.81137 3.98207 4.01302 4.21808 4.26601 4.28134 4.44639 4.45521 4.50341 4.65521 4.73750 4.82350 4.86394 4.88564 4.91869 5.07534 5.12381 5.14947 5.31611 5.40105 5.42918 5.59734 5.65790 5.71407 5.78768 5.89539 5.91959 5.96465 6.20074 6.33501 6.69358 6.85554 6.92889 7.60918 8.03775 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020548 B = 0.003687 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.344887 B = 7593.270525 C = 8795.232919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.090 4.090 4 C -0.109 4.109 5 C -0.116 4.116 6 C 0.122 3.878 7 N -0.728 5.728 8 C 0.554 3.446 9 O -0.582 6.582 10 C -0.284 4.284 11 C -0.041 4.041 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.226 4.226 15 C 0.094 3.906 16 C -0.511 4.511 17 H 0.080 0.920 18 C -0.004 4.004 19 N -0.817 5.817 20 Si 1.116 2.884 21 H -0.264 1.264 22 H -0.259 1.259 23 H -0.272 1.272 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.407 0.593 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.024 -3.756 -10.528 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.002 4.002 7 N -0.383 5.383 8 C 0.347 3.653 9 O -0.464 6.464 10 C -0.289 4.289 11 C -0.060 4.060 12 C -0.263 4.263 13 C -0.091 4.091 14 C -0.245 4.245 15 C 0.090 3.910 16 C -0.539 4.539 17 H 0.098 0.902 18 C -0.219 4.219 19 N -0.441 5.441 20 Si 0.933 3.067 21 H -0.188 1.188 22 H -0.183 1.183 23 H -0.197 1.197 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.244 0.756 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.739 -4.705 -8.786 16.175 hybrid contribution -0.893 0.571 -1.341 1.709 sum -13.632 -4.134 -10.127 17.478 Atomic orbital electron populations 1.24016 0.96008 1.02449 1.01203 1.23108 0.96376 0.98882 0.99890 1.20743 0.98003 0.95485 0.98524 1.21409 0.97842 0.96579 0.98868 1.21723 0.97417 0.99377 0.96847 1.21317 0.94014 0.85349 0.99482 1.45792 1.40997 1.20568 1.30894 1.18492 0.79234 0.86835 0.80743 1.90654 1.67029 1.49530 1.39161 1.19826 1.11405 0.97084 1.00597 1.21171 0.96663 0.92815 0.95348 1.20826 1.03690 0.99525 1.02246 1.21172 0.96455 0.97961 0.93498 1.21209 1.06532 0.95403 1.01393 1.17928 0.90465 0.92149 0.90491 1.21095 0.99122 1.19072 1.14625 0.90242 1.28485 0.91205 0.94215 1.07966 1.70502 1.32327 1.28096 1.13214 0.83023 0.77579 0.76523 0.69559 1.18769 1.18327 1.19719 0.87858 0.88188 0.87190 0.90983 0.90235 0.91709 0.92081 0.90156 0.90083 0.93607 0.93497 0.75593 0.84528 0.84426 0.85701 0.89274 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.68 14.32 67.78 0.97 -1.71 16 2 C -0.16 -2.38 9.52 25.64 0.24 -2.14 16 3 C -0.09 -1.27 5.66 29.85 0.17 -1.10 16 4 C -0.11 -1.84 5.20 30.60 0.16 -1.68 16 5 C -0.12 -2.18 5.33 30.59 0.16 -2.01 16 6 C 0.12 3.57 5.67 86.38 0.49 4.06 16 7 N -0.73 -25.02 5.51 -466.37 -2.57 -27.59 16 8 C 0.55 26.38 7.73 86.67 0.67 27.05 16 9 O -0.58 -32.80 13.56 -4.06 -0.06 -32.85 16 10 C -0.28 -13.94 5.92 -19.70 -0.12 -14.06 16 11 C -0.04 -1.62 9.53 22.51 0.21 -1.41 16 12 C -0.24 -9.21 10.03 22.41 0.22 -8.98 16 13 C -0.07 -3.06 10.01 22.26 0.22 -2.83 16 14 C -0.23 -11.57 7.87 22.72 0.18 -11.39 16 15 C 0.09 5.21 5.17 -21.11 -0.11 5.10 16 16 C -0.51 -30.12 7.65 23.41 0.18 -29.94 16 17 H 0.08 4.96 5.92 -2.91 -0.02 4.95 16 18 C 0.00 -0.20 5.04 85.37 0.43 0.23 16 19 N -0.82 -46.36 12.57 21.88 0.28 -46.08 16 20 Si 1.12 47.89 29.98 68.60 2.06 49.95 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H 0.10 1.18 8.06 -2.91 -0.02 1.16 16 25 H 0.10 1.22 7.84 -2.91 -0.02 1.20 16 26 H 0.11 1.50 8.06 -2.91 -0.02 1.48 16 27 H 0.07 0.94 7.79 -2.38 -0.02 0.92 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.41 11.09 6.51 -92.71 -0.60 10.48 16 36 H 0.14 4.02 6.41 -2.91 -0.02 4.00 16 37 H 0.14 4.06 8.06 -2.92 -0.02 4.04 16 38 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.09 4.77 6.94 -2.91 -0.02 4.75 16 40 H 0.28 16.48 6.55 -92.71 -0.61 15.87 16 Total: -1.00 -70.07 334.79 4.38 -65.69 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.58 Total: 31.68 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 4.09 Total: -40.80 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -2.29 Total: -73.67 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.06 Total: -32.85 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.06 Total: 49.95 kcal Total: -70.07 4.38 -65.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601457509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.741 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds