Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50704 * 119.99976 * 2 1 4 4 C 1.30995 * 119.99800 * 179.97438 * 2 1 3 5 5 C 1.50697 * 120.00166 * 353.84557 * 4 2 1 6 6 C 1.53009 * 109.47010 * 117.63121 * 5 4 2 7 7 N 1.46505 * 109.46937 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99800 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00008 * 0.02562 * 8 7 6 10 10 C 1.47429 * 120.00219 * 179.97438 * 8 7 6 11 11 C 1.39227 * 120.27902 * 354.54085 * 10 8 7 12 12 C 1.38224 * 120.08978 * 180.27925 * 11 10 8 13 13 C 1.38830 * 120.67662 * 359.68961 * 12 11 10 14 14 C 1.37593 * 120.56944 * 0.02562 * 13 12 11 15 15 C 1.40711 * 119.88084 * 0.02562 * 14 13 12 16 16 C 1.40894 * 120.32279 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99422 * 145.04803 * 16 15 14 18 18 C 1.40266 * 120.00394 * 325.04693 * 16 15 14 19 19 N 1.30623 * 120.00367 * 342.69775 * 18 16 15 20 20 Si 1.86801 * 119.99886 * 162.69573 * 18 16 15 21 21 H 1.48499 * 109.47158 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47419 * 300.00373 * 20 18 16 23 23 H 1.48501 * 109.47266 * 59.99982 * 20 18 16 24 24 H 1.09000 * 109.47353 * 264.96729 * 1 2 3 25 25 H 1.09007 * 109.47129 * 24.96172 * 1 2 3 26 26 H 1.09000 * 109.47536 * 144.95993 * 1 2 3 27 27 H 1.09002 * 109.46711 * 239.99938 * 3 2 1 28 28 H 1.08999 * 109.47394 * 359.97438 * 3 2 1 29 29 H 1.08996 * 109.46902 * 120.00622 * 3 2 1 30 30 H 1.08003 * 120.00253 * 173.84771 * 4 2 1 31 31 H 1.08998 * 109.47152 * 357.63668 * 5 4 2 32 32 H 1.08998 * 109.47398 * 237.63070 * 5 4 2 33 33 H 1.09004 * 109.47065 * 60.00022 * 6 5 4 34 34 H 1.08998 * 109.46999 * 300.00193 * 6 5 4 35 35 H 0.96996 * 120.00064 * 0.02562 * 7 6 5 36 36 H 1.07996 * 119.95984 * 359.97438 * 11 10 8 37 37 H 1.08000 * 119.66326 * 179.71504 * 12 11 10 38 38 H 1.08002 * 119.71184 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.05804 * 180.02562 * 14 13 12 40 40 H 0.97001 * 119.99756 * 354.52637 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1345 0.0005 5 6 1.4149 -2.4357 0.1410 6 6 1.6212 -3.2807 -1.1178 7 7 0.8945 -4.5455 -0.9815 8 6 0.9314 -5.4544 -1.9759 9 8 1.5683 -5.2249 -2.9862 10 6 0.2006 -6.7274 -1.8386 11 6 -0.4353 -7.0462 -0.6417 12 6 -1.1145 -8.2434 -0.5154 13 6 -1.1776 -9.1373 -1.5757 14 6 -0.5640 -8.8476 -2.7727 15 6 0.1348 -7.6360 -2.9271 16 6 0.7669 -7.3301 -4.1485 17 1 0.8005 -6.3088 -4.4981 18 6 1.3526 -8.3518 -4.9104 19 7 1.6174 -9.5067 -4.3605 20 14 1.7540 -8.0610 -6.7114 21 1 2.3612 -9.2875 -7.2876 22 1 0.5080 -7.7323 -7.4495 23 1 2.7113 -6.9318 -6.8291 24 1 -0.3634 -0.0901 1.0237 25 1 -0.3634 0.9317 -0.4337 26 1 -0.3634 -0.8414 -0.5900 27 1 2.8872 1.3628 -0.8900 28 1 1.5522 2.1337 -0.0005 29 1 2.8872 1.3628 0.8899 30 1 3.2373 -1.1373 -0.0997 31 1 0.3521 -2.2323 0.2718 32 1 1.7905 -2.9785 1.0084 33 1 2.6841 -3.4841 -1.2487 34 1 1.2457 -2.7379 -1.9853 35 1 0.3862 -4.7284 -0.1759 36 1 -0.3938 -6.3594 0.1907 37 1 -1.6014 -8.4858 0.4177 38 1 -1.7129 -10.0682 -1.4600 39 1 -0.6187 -9.5488 -3.5923 40 1 1.4832 -9.6326 -3.4081 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601524735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = -24.049280 kcal Electronic energy + Delta-G solvation = -20150.708411 eV Core-core repulsion = 17122.503265 eV Total energy + Delta-G solvation = -3028.205145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.04861 -37.48131 -36.75239 -34.37747 -33.76297 -31.10524 -29.78098 -29.24184 -27.96053 -26.21314 -25.04081 -22.75608 -21.76086 -20.82200 -19.53708 -18.07257 -17.88364 -16.38711 -15.66501 -15.36184 -14.73752 -14.36726 -14.22725 -14.16062 -13.99476 -13.76384 -13.56821 -12.90374 -12.61917 -12.55244 -12.24284 -12.06735 -11.91648 -11.79639 -11.68294 -11.17283 -11.11506 -10.92699 -10.76674 -10.73216 -10.34594 -10.15100 -9.57657 -9.08002 -8.81905 -8.48700 -8.36251 -7.78680 -7.58525 -7.12051 -4.44587 2.02020 2.25119 2.74296 3.22134 3.32662 3.42907 3.95642 4.06209 4.09330 4.66708 4.70903 4.80767 5.08702 5.21369 5.23354 5.33930 5.45532 5.47561 5.58270 5.67208 5.70913 5.77202 5.85860 5.87089 5.97689 6.13489 6.13775 6.26367 6.51806 6.56085 6.72291 6.79563 6.99319 7.14111 7.28760 7.49661 7.62944 7.72576 7.89695 8.10466 8.22280 8.39718 8.74077 8.87428 9.37967 10.07707 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.004251 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.991346 B = 6585.342241 C = 7766.020207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.135 4.135 3 C -0.116 4.116 4 C -0.158 4.158 5 C -0.106 4.106 6 C 0.131 3.869 7 N -0.750 5.750 8 C 0.562 3.438 9 O -0.537 6.537 10 C -0.264 4.264 11 C -0.044 4.044 12 C -0.259 4.259 13 C -0.076 4.076 14 C -0.201 4.201 15 C 0.121 3.879 16 C -0.466 4.466 17 H 0.102 0.898 18 C 0.031 3.969 19 N -0.797 5.797 20 Si 1.071 2.929 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.273 1.273 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.391 0.609 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 13.029 7.908 15.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.135 4.135 3 C -0.173 4.173 4 C -0.176 4.176 5 C -0.143 4.143 6 C 0.006 3.994 7 N -0.405 5.405 8 C 0.356 3.644 9 O -0.415 6.415 10 C -0.269 4.269 11 C -0.063 4.063 12 C -0.278 4.278 13 C -0.095 4.095 14 C -0.220 4.220 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.120 0.880 18 C -0.190 4.190 19 N -0.421 5.421 20 Si 0.894 3.106 21 H -0.199 1.199 22 H -0.200 1.200 23 H -0.198 1.198 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.225 0.775 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.053 12.414 5.803 13.703 hybrid contribution -0.824 0.589 2.072 2.306 sum -0.876 13.002 7.875 15.226 Atomic orbital electron populations 1.20930 0.92406 1.02535 1.01962 1.21621 0.95853 0.95006 1.01050 1.20820 0.99779 0.94760 1.01945 1.22463 0.99605 0.93261 1.02315 1.20984 1.00865 0.94277 0.98219 1.21051 0.97019 0.84444 0.96856 1.46040 1.54680 1.18332 1.21480 1.18383 0.80490 0.83543 0.81991 1.90688 1.43261 1.78354 1.29187 1.19433 1.12643 0.99159 0.95648 1.20719 0.95079 0.95501 0.95020 1.20250 1.11194 0.97398 0.99008 1.20748 0.97770 0.97266 0.93709 1.21265 1.03315 1.00017 0.97403 1.17511 0.89600 0.89953 0.91264 1.21116 1.27650 0.98792 1.01718 0.87998 1.27247 0.92989 0.91318 1.07470 1.70383 1.31190 1.23873 1.16647 0.83550 0.77808 0.76953 0.72256 1.19941 1.19987 1.19802 0.91677 0.92084 0.91182 0.91665 0.92137 0.91764 0.87159 0.90561 0.90622 0.92230 0.92252 0.77533 0.89095 0.88885 0.88857 0.87476 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.91 36.01 0.32 -0.79 16 2 C -0.14 -1.34 6.05 -101.06 -0.61 -1.95 16 3 C -0.12 -0.94 10.04 36.01 0.36 -0.58 16 4 C -0.16 -1.70 9.14 -36.03 -0.33 -2.03 16 5 C -0.11 -1.22 5.43 -27.88 -0.15 -1.37 16 6 C 0.13 2.02 5.66 -4.03 -0.02 2.00 16 7 N -0.75 -13.50 5.50 -61.37 -0.34 -13.83 16 8 C 0.56 13.29 7.72 -12.52 -0.10 13.19 16 9 O -0.54 -14.54 13.61 5.27 0.07 -14.47 16 10 C -0.26 -6.50 5.92 -104.37 -0.62 -7.11 16 11 C -0.04 -0.94 9.52 -39.22 -0.37 -1.31 16 12 C -0.26 -5.45 10.03 -39.37 -0.39 -5.84 16 13 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 14 C -0.20 -5.05 7.82 -38.88 -0.30 -5.35 16 15 C 0.12 3.27 5.18 -106.54 -0.55 2.71 16 16 C -0.47 -13.00 7.60 -37.82 -0.29 -13.29 16 17 H 0.10 2.97 6.02 -52.49 -0.32 2.65 16 18 C 0.03 0.81 5.08 -17.30 -0.09 0.73 16 19 N -0.80 -21.66 12.57 55.56 0.70 -20.96 16 20 Si 1.07 22.88 29.97 -169.99 -5.09 17.79 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.49 7.95 -51.93 -0.41 0.08 16 26 H 0.07 0.70 6.63 -51.93 -0.34 0.36 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.11 1.13 8.05 -52.48 -0.42 0.71 16 31 H 0.08 0.82 5.66 -51.93 -0.29 0.53 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.39 5.98 6.53 -40.82 -0.27 5.72 16 36 H 0.09 1.58 6.43 -52.49 -0.34 1.24 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.11 2.74 6.92 -52.49 -0.36 2.38 16 40 H 0.30 8.27 6.44 -40.82 -0.26 8.01 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -30.44 330.58 -8.83 -39.27 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.61 Total: 10.29 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.54 Total: -23.07 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.36 Total: -34.80 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.07 Total: -14.47 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.09 Total: 17.79 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.44 -8.83 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601524735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.225 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds