Wall clock time and date at job start Mon Mar 30 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00075 * 2 1 4 4 C 1.53001 * 109.46705 * 124.99969 * 3 2 1 5 5 H 1.09001 * 109.47380 * 55.00398 * 4 3 2 6 6 C 1.53004 * 109.47111 * 175.00161 * 4 3 2 7 7 C 1.52993 * 109.47332 * 185.00436 * 6 4 3 8 8 N 1.46497 * 109.47377 * 295.00378 * 4 3 2 9 9 C 1.34774 * 120.00046 * 155.00372 * 8 4 3 10 10 O 1.21606 * 120.00091 * 359.97438 * 9 8 4 11 11 C 1.47434 * 120.00082 * 179.97438 * 9 8 4 12 12 C 1.39233 * 120.27940 * 354.90664 * 11 9 8 13 13 C 1.38220 * 120.08669 * 180.29460 * 12 11 9 14 14 C 1.38831 * 120.67867 * 359.44880 * 13 12 11 15 15 C 1.37598 * 120.56504 * 0.55488 * 14 13 12 16 16 C 1.40694 * 119.88644 * 359.72654 * 15 14 13 17 17 C 1.40890 * 120.32954 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00318 * 141.29513 * 17 16 15 19 19 C 1.40277 * 119.99835 * 321.30221 * 17 16 15 20 20 N 1.30630 * 120.00030 * 174.57565 * 19 17 16 21 21 Si 1.86793 * 119.99806 * 354.56878 * 19 17 16 22 22 H 1.48501 * 109.47024 * 89.16621 * 21 19 17 23 23 H 1.48507 * 109.47183 * 209.16294 * 21 19 17 24 24 H 1.48501 * 109.47344 * 329.16424 * 21 19 17 25 25 H 1.07995 * 120.00132 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99880 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99741 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46723 * 5.00376 * 3 2 1 29 29 H 1.08995 * 109.47101 * 244.99807 * 3 2 1 30 30 H 1.09007 * 109.46840 * 305.00299 * 6 4 3 31 31 H 1.08994 * 109.46971 * 65.00032 * 6 4 3 32 32 H 1.09002 * 109.47406 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47045 * 299.99737 * 7 6 4 34 34 H 1.09001 * 109.47677 * 59.99243 * 7 6 4 35 35 H 0.96998 * 119.99731 * 334.99675 * 8 4 3 36 36 H 1.07990 * 119.95192 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.65961 * 179.69989 * 13 12 11 38 38 H 1.08000 * 119.71271 * 180.30388 * 14 13 12 39 39 H 1.08001 * 120.05109 * 179.74662 * 15 14 13 40 40 H 0.96995 * 119.99874 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6827 0.4572 1.1404 6 6 3.8876 2.6015 1.1112 7 6 4.9420 2.5696 2.2193 8 7 2.2786 1.3221 2.4362 9 6 2.8474 0.8472 3.5620 10 8 3.9884 0.4274 3.5363 11 6 2.0863 0.8368 4.8246 12 6 0.8198 1.4119 4.8857 13 6 0.1123 1.4053 6.0731 14 6 0.6461 0.8185 7.2125 15 6 1.8953 0.2424 7.1831 16 6 2.6387 0.2408 5.9885 17 6 3.9185 -0.3469 5.9477 18 1 4.2280 -0.9072 5.0779 19 6 4.7907 -0.2045 7.0371 20 7 5.9341 -0.8361 7.0452 21 14 4.3171 0.8883 8.4760 22 1 3.5659 0.0899 9.4778 23 1 5.5447 1.4408 9.1031 24 1 3.4642 2.0032 7.9913 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1315 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 4.3816 2.6537 0.1409 31 1 3.2497 3.4756 1.2416 32 1 5.5497 3.4731 2.1688 33 1 4.4480 2.5174 3.1895 34 1 5.5799 1.6953 2.0889 35 1 1.3684 1.6567 2.4566 36 1 0.3915 1.8675 4.0053 37 1 -0.8676 1.8576 6.1139 38 1 0.0776 0.8179 8.1307 39 1 2.3043 -0.2081 8.0754 40 1 6.5371 -0.7379 7.7986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601546564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:40 Heat of formation + Delta-G solvation = -7.138184 kcal Electronic energy + Delta-G solvation = -21279.405003 eV Core-core repulsion = 18251.933178 eV Total energy + Delta-G solvation = -3027.471825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.38065 -37.50879 -35.95769 -33.72891 -33.38654 -31.95351 -30.44410 -29.79841 -28.33791 -25.35124 -23.62999 -22.49627 -21.34959 -20.19437 -19.86617 -19.32810 -17.52629 -16.64384 -15.99145 -15.31050 -14.92121 -14.57829 -14.06901 -14.00767 -13.78534 -13.54191 -13.08943 -12.80836 -12.63989 -12.34457 -12.26178 -11.97448 -11.77964 -11.48835 -11.13201 -10.96043 -10.85599 -10.69010 -10.60952 -10.42888 -10.40334 -10.03265 -9.76825 -9.28896 -9.24227 -8.46560 -8.21665 -7.80060 -7.55958 -6.84500 -4.43522 2.12933 2.33959 2.61005 3.10615 3.19401 3.30268 3.95496 3.99443 4.05834 4.63623 4.78451 5.07306 5.21027 5.38225 5.44911 5.52948 5.56925 5.75664 5.78743 5.79964 5.95366 5.96279 6.02650 6.16563 6.28782 6.35297 6.42002 6.51700 6.61649 6.67138 6.79224 6.81518 6.98322 7.12107 7.21703 7.28393 7.40515 7.59532 7.76914 8.02558 8.39979 8.51648 8.65710 8.86673 9.42779 10.13606 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.006483 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.727521 B = 4317.679731 C = 5146.175080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.101 4.101 4 C 0.152 3.848 5 H 0.086 0.914 6 C -0.130 4.130 7 C -0.146 4.146 8 N -0.739 5.739 9 C 0.561 3.439 10 O -0.519 6.519 11 C -0.244 4.244 12 C -0.043 4.043 13 C -0.252 4.252 14 C -0.067 4.067 15 C -0.227 4.227 16 C 0.118 3.882 17 C -0.396 4.396 18 H 0.115 0.885 19 C 0.079 3.921 20 N -0.799 5.799 21 Si 0.907 3.093 22 H -0.269 1.269 23 H -0.290 1.290 24 H -0.244 1.244 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.389 0.611 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 5.257 -9.124 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.160 4.160 3 C -0.139 4.139 4 C 0.047 3.953 5 H 0.104 0.896 6 C -0.169 4.169 7 C -0.203 4.203 8 N -0.394 5.394 9 C 0.354 3.646 10 O -0.396 6.396 11 C -0.249 4.249 12 C -0.062 4.062 13 C -0.272 4.272 14 C -0.085 4.085 15 C -0.246 4.246 16 C 0.113 3.887 17 C -0.423 4.423 18 H 0.133 0.867 19 C -0.140 4.140 20 N -0.423 5.423 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.167 1.167 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.181 4.841 -9.066 11.993 hybrid contribution -0.654 0.599 0.769 1.174 sum -6.834 5.441 -8.297 12.048 Atomic orbital electron populations 1.23765 0.95886 1.01577 1.02442 1.22913 0.96014 0.98444 0.98626 1.21080 0.98543 0.95703 0.98554 1.20798 0.92581 0.98775 0.83174 0.89616 1.21955 0.98015 0.97693 0.99252 1.21807 0.98352 1.00507 0.99620 1.46030 1.17272 1.67689 1.08406 1.18257 0.86417 0.76854 0.83085 1.90773 1.17717 1.46112 1.84983 1.19527 0.97387 1.12733 0.95271 1.20789 0.93354 0.95918 0.96167 1.20298 1.00936 1.11930 0.94014 1.20738 0.95163 0.95885 0.96744 1.21185 0.95978 1.08524 0.98876 1.17572 0.93340 0.88052 0.89736 1.19923 0.96036 1.24095 1.02292 0.86725 1.26279 0.94621 0.94629 0.98490 1.69545 1.08319 1.33716 1.30714 0.86417 0.77867 0.82025 0.80360 1.19520 1.21779 1.16679 0.88835 0.88727 0.87423 0.91283 0.89923 0.92086 0.92477 0.94436 0.91408 0.92140 0.77710 0.88755 0.88593 0.88617 0.87759 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.16 14.32 29.01 0.42 -1.74 16 2 C -0.14 -1.66 9.25 -36.03 -0.33 -1.99 16 3 C -0.10 -1.11 5.20 -27.88 -0.15 -1.26 16 4 C 0.15 2.21 2.24 -67.93 -0.15 2.05 16 5 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 6 C -0.13 -1.81 5.61 -26.73 -0.15 -1.96 16 7 C -0.15 -2.52 8.51 37.15 0.32 -2.21 16 8 N -0.74 -12.40 4.69 -54.88 -0.26 -12.66 16 9 C 0.56 12.33 6.29 -12.52 -0.08 12.25 16 10 O -0.52 -13.15 10.81 5.27 0.06 -13.10 16 11 C -0.24 -5.66 5.92 -104.36 -0.62 -6.28 16 12 C -0.04 -0.86 9.52 -39.22 -0.37 -1.24 16 13 C -0.25 -4.96 10.03 -39.37 -0.39 -5.36 16 14 C -0.07 -1.39 10.01 -39.60 -0.40 -1.79 16 15 C -0.23 -5.37 6.94 -38.89 -0.27 -5.64 16 16 C 0.12 3.02 5.04 -106.55 -0.54 2.48 16 17 C -0.40 -11.06 8.08 -37.81 -0.31 -11.37 16 18 H 0.12 3.53 6.37 -52.49 -0.33 3.20 16 19 C 0.08 2.13 5.51 -17.30 -0.10 2.03 16 20 N -0.80 -21.92 13.92 55.56 0.77 -21.15 16 21 Si 0.91 21.00 24.48 -169.99 -4.16 16.84 16 22 H -0.27 -5.93 6.70 56.52 0.38 -5.55 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.24 -5.78 6.68 56.52 0.38 -5.40 16 25 H 0.09 0.90 7.84 -52.49 -0.41 0.49 16 26 H 0.09 0.97 8.06 -52.49 -0.42 0.54 16 27 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.40 5.65 -51.93 -0.29 1.11 16 34 H 0.06 1.14 7.84 -51.93 -0.41 0.73 16 35 H 0.39 5.73 6.66 -40.82 -0.27 5.45 16 36 H 0.09 1.54 6.43 -52.49 -0.34 1.20 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.10 2.44 4.89 -52.49 -0.26 2.19 16 40 H 0.29 7.08 8.29 -40.82 -0.34 6.74 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -29.30 320.99 -7.54 -36.85 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.67 Total: 10.39 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.12 Total: -22.01 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.52 Total: -33.81 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.06 Total: -13.10 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.16 Total: 16.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.30 -7.54 -36.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601546564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.708 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds