Wall clock time and date at job start Mon Mar 30 2020 02:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00075 * 2 1 4 4 C 1.53001 * 109.46705 * 124.99969 * 3 2 1 5 5 H 1.09001 * 109.47380 * 55.00398 * 4 3 2 6 6 C 1.53004 * 109.47111 * 175.00161 * 4 3 2 7 7 C 1.52993 * 109.47332 * 185.00436 * 6 4 3 8 8 N 1.46497 * 109.47377 * 295.00378 * 4 3 2 9 9 C 1.34774 * 120.00046 * 155.00372 * 8 4 3 10 10 O 1.21606 * 120.00091 * 359.97438 * 9 8 4 11 11 C 1.47434 * 120.00082 * 179.97438 * 9 8 4 12 12 C 1.39233 * 120.27940 * 354.90664 * 11 9 8 13 13 C 1.38220 * 120.08669 * 180.29460 * 12 11 9 14 14 C 1.38831 * 120.67867 * 359.44880 * 13 12 11 15 15 C 1.37598 * 120.56504 * 0.55488 * 14 13 12 16 16 C 1.40694 * 119.88644 * 359.72654 * 15 14 13 17 17 C 1.40890 * 120.32954 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00318 * 141.29513 * 17 16 15 19 19 C 1.40277 * 119.99835 * 321.30221 * 17 16 15 20 20 N 1.30630 * 120.00030 * 174.57565 * 19 17 16 21 21 Si 1.86793 * 119.99806 * 354.56878 * 19 17 16 22 22 H 1.48501 * 109.47024 * 89.16621 * 21 19 17 23 23 H 1.48507 * 109.47183 * 209.16294 * 21 19 17 24 24 H 1.48501 * 109.47344 * 329.16424 * 21 19 17 25 25 H 1.07995 * 120.00132 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99880 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99741 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.46723 * 5.00376 * 3 2 1 29 29 H 1.08995 * 109.47101 * 244.99807 * 3 2 1 30 30 H 1.09007 * 109.46840 * 305.00299 * 6 4 3 31 31 H 1.08994 * 109.46971 * 65.00032 * 6 4 3 32 32 H 1.09002 * 109.47406 * 179.97438 * 7 6 4 33 33 H 1.09007 * 109.47045 * 299.99737 * 7 6 4 34 34 H 1.09001 * 109.47677 * 59.99243 * 7 6 4 35 35 H 0.96998 * 119.99731 * 334.99675 * 8 4 3 36 36 H 1.07990 * 119.95192 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.65961 * 179.69989 * 13 12 11 38 38 H 1.08000 * 119.71271 * 180.30388 * 14 13 12 39 39 H 1.08001 * 120.05109 * 179.74662 * 15 14 13 40 40 H 0.96995 * 119.99874 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 1 3.6827 0.4572 1.1404 6 6 3.8876 2.6015 1.1112 7 6 4.9420 2.5696 2.2193 8 7 2.2786 1.3221 2.4362 9 6 2.8474 0.8472 3.5620 10 8 3.9884 0.4274 3.5363 11 6 2.0863 0.8368 4.8246 12 6 0.8198 1.4119 4.8857 13 6 0.1123 1.4053 6.0731 14 6 0.6461 0.8185 7.2125 15 6 1.8953 0.2424 7.1831 16 6 2.6387 0.2408 5.9885 17 6 3.9185 -0.3469 5.9477 18 1 4.2280 -0.9072 5.0779 19 6 4.7907 -0.2045 7.0371 20 7 5.9341 -0.8361 7.0452 21 14 4.3171 0.8883 8.4760 22 1 3.5659 0.0899 9.4778 23 1 5.5447 1.4408 9.1031 24 1 3.4642 2.0032 7.9913 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1315 0.0896 29 1 2.6213 1.4026 -0.9313 30 1 4.3816 2.6537 0.1409 31 1 3.2497 3.4756 1.2416 32 1 5.5497 3.4731 2.1688 33 1 4.4480 2.5174 3.1895 34 1 5.5799 1.6953 2.0889 35 1 1.3684 1.6567 2.4566 36 1 0.3915 1.8675 4.0053 37 1 -0.8676 1.8576 6.1139 38 1 0.0776 0.8179 8.1307 39 1 2.3043 -0.2081 8.0754 40 1 6.5371 -0.7379 7.7986 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601546564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:39 Heat of formation + Delta-G solvation = -25.503305 kcal Electronic energy + Delta-G solvation = -21280.201375 eV Core-core repulsion = 18251.933178 eV Total energy + Delta-G solvation = -3028.268196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99260 -39.10780 -37.39896 -35.53248 -34.56997 -33.48630 -32.27001 -31.40379 -29.50540 -27.18509 -24.85895 -24.12668 -23.04331 -21.57696 -21.22942 -20.50730 -19.39970 -18.28424 -17.35478 -17.06347 -16.24340 -15.96657 -15.78412 -15.50874 -15.41216 -14.64473 -14.58853 -14.45391 -14.19753 -13.92112 -13.70401 -13.36172 -13.23887 -12.96015 -12.68968 -12.51152 -12.38820 -12.15288 -11.98107 -11.93821 -11.69471 -11.61888 -11.58891 -11.07427 -10.28520 -10.15261 -9.76001 -9.48901 -9.36441 -8.77693 -6.44449 0.38293 0.84163 1.22885 1.35883 1.44891 1.46318 2.10687 2.34982 2.54753 2.76063 3.54944 3.77494 4.04827 4.21735 4.24602 4.29398 4.31392 4.41153 4.47463 4.59227 4.69200 4.72988 4.82493 4.88905 5.00041 5.03381 5.04943 5.05104 5.17205 5.31142 5.32938 5.47874 5.53772 5.69611 5.77644 5.82916 5.88934 5.94651 5.98576 6.28035 6.48648 6.71000 6.81577 7.00528 7.78319 8.27612 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.006483 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.727521 B = 4317.679731 C = 5146.175080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C -0.087 4.087 4 C 0.148 3.852 5 H 0.051 0.949 6 C -0.122 4.122 7 C -0.142 4.142 8 N -0.717 5.717 9 C 0.555 3.445 10 O -0.564 6.564 11 C -0.259 4.259 12 C -0.043 4.043 13 C -0.227 4.227 14 C -0.065 4.065 15 C -0.247 4.247 16 C 0.098 3.902 17 C -0.440 4.440 18 H 0.062 0.938 19 C 0.034 3.966 20 N -0.858 5.858 21 Si 0.967 3.033 22 H -0.249 1.249 23 H -0.283 1.283 24 H -0.250 1.250 25 H 0.114 0.886 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.404 0.596 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.824 8.344 -9.898 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.184 4.184 3 C -0.124 4.124 4 C 0.044 3.956 5 H 0.069 0.931 6 C -0.160 4.160 7 C -0.200 4.200 8 N -0.372 5.372 9 C 0.347 3.653 10 O -0.443 6.443 11 C -0.264 4.264 12 C -0.061 4.061 13 C -0.246 4.246 14 C -0.083 4.083 15 C -0.266 4.266 16 C 0.095 3.905 17 C -0.469 4.469 18 H 0.080 0.920 19 C -0.178 4.178 20 N -0.485 5.485 21 Si 0.790 3.210 22 H -0.174 1.174 23 H -0.210 1.210 24 H -0.174 1.174 25 H 0.132 0.868 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.240 0.760 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.732 7.938 -9.872 16.603 hybrid contribution 0.423 -0.282 0.806 0.953 sum -10.310 7.657 -9.066 15.720 Atomic orbital electron populations 1.23969 0.95457 1.02694 1.00386 1.22934 0.96620 0.98302 1.00548 1.21003 0.98093 0.96022 0.97285 1.20962 0.93253 0.97960 0.83463 0.93080 1.21922 0.97155 0.97829 0.99119 1.21729 0.99108 0.99971 0.99170 1.45792 1.17762 1.65839 1.07777 1.18358 0.85885 0.76809 0.84292 1.90782 1.19779 1.47965 1.85807 1.19977 0.98990 1.12361 0.95073 1.21241 0.91684 0.94773 0.98419 1.20963 1.02153 1.08693 0.92774 1.21244 0.93861 0.94177 0.99045 1.21283 0.97418 1.09900 0.98033 1.17835 0.92720 0.88098 0.91884 1.19651 0.98312 1.27476 1.01510 0.92022 1.27001 0.94305 0.95752 1.00764 1.69614 1.09848 1.36823 1.32241 0.85513 0.77746 0.80054 0.77691 1.17378 1.21031 1.17405 0.86755 0.88581 0.89269 0.88817 0.87795 0.89053 0.90272 0.92633 0.95248 0.95135 0.75973 0.84287 0.83794 0.84676 0.88144 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 14.32 67.78 0.97 -2.48 16 2 C -0.17 -3.56 9.25 25.65 0.24 -3.32 16 3 C -0.09 -1.63 5.20 29.85 0.16 -1.47 16 4 C 0.15 4.15 2.24 44.99 0.10 4.25 16 5 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 6 C -0.12 -3.14 5.61 30.59 0.17 -2.97 16 7 C -0.14 -5.08 8.51 71.98 0.61 -4.47 16 8 N -0.72 -23.20 4.69 -445.79 -2.09 -25.29 16 9 C 0.55 25.12 6.29 86.67 0.54 25.67 16 10 O -0.56 -31.08 10.81 -4.05 -0.04 -31.12 16 11 C -0.26 -11.96 5.92 -19.70 -0.12 -12.07 16 12 C -0.04 -1.51 9.52 22.50 0.21 -1.30 16 13 C -0.23 -7.55 10.03 22.41 0.22 -7.33 16 14 C -0.07 -2.42 10.01 22.26 0.22 -2.20 16 15 C -0.25 -11.47 6.94 22.72 0.16 -11.31 16 16 C 0.10 5.20 5.04 -21.11 -0.11 5.09 16 17 C -0.44 -26.71 8.08 23.42 0.19 -26.52 16 18 H 0.06 4.27 6.37 -2.91 -0.02 4.25 16 19 C 0.03 1.97 5.51 85.37 0.47 2.44 16 20 N -0.86 -51.34 13.92 21.88 0.30 -51.04 16 21 Si 0.97 44.95 24.48 68.60 1.68 46.63 16 22 H -0.25 -10.57 6.70 99.48 0.67 -9.91 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.25 -11.67 6.68 99.48 0.66 -11.01 16 25 H 0.11 1.63 7.84 -2.91 -0.02 1.60 16 26 H 0.10 1.72 8.06 -2.91 -0.02 1.69 16 27 H 0.09 2.21 8.06 -2.91 -0.02 2.19 16 28 H 0.09 1.36 7.79 -2.39 -0.02 1.34 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.85 8.14 -2.38 -0.02 1.84 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.03 1.25 5.65 -2.38 -0.01 1.24 16 34 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 35 H 0.40 10.40 6.66 -92.71 -0.62 9.78 16 36 H 0.14 3.66 6.43 -2.92 -0.02 3.64 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.10 4.66 4.89 -2.91 -0.01 4.65 16 40 H 0.29 15.61 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -73.27 320.99 4.23 -69.03 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.34 Total: 29.77 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 4.05 Total: -37.98 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -1.79 Total: -76.33 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.04 Total: -31.12 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.68 Total: 46.63 kcal Total: -73.27 4.23 -69.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601546564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.528 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds