Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46944 * 2 1 4 4 H 1.08998 * 115.54844 * 29.28080 * 3 2 1 5 5 C 1.52995 * 117.49790 * 243.61152 * 3 2 1 6 6 C 1.52995 * 117.49694 * 174.98683 * 3 2 1 7 7 H 1.09003 * 117.50054 * 0.02562 * 6 3 2 8 8 C 1.53002 * 117.49759 * 214.98006 * 6 3 2 9 9 N 1.46497 * 109.46921 * 174.98919 * 8 6 3 10 10 C 1.34776 * 120.00141 * 179.97438 * 9 8 6 11 11 O 1.21612 * 119.99977 * 0.02562 * 10 9 8 12 12 C 1.47430 * 120.00496 * 179.97438 * 10 9 8 13 13 C 1.39221 * 120.27871 * 354.17168 * 12 10 9 14 14 C 1.38228 * 120.09178 * 179.71675 * 13 12 10 15 15 C 1.38828 * 120.67368 * 0.55727 * 14 13 12 16 16 C 1.37599 * 120.56910 * 359.71724 * 15 14 13 17 17 C 1.40703 * 119.88310 * 0.02562 * 16 15 14 18 18 C 1.40888 * 120.32934 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00574 * 145.84679 * 18 17 16 20 20 C 1.40276 * 119.99928 * 325.83776 * 18 17 16 21 21 N 1.30631 * 120.00060 * 350.77393 * 20 18 17 22 22 Si 1.86793 * 120.00163 * 170.77119 * 20 18 17 23 23 H 1.48500 * 109.47033 * 60.00373 * 22 20 18 24 24 H 1.48504 * 109.47279 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47254 * 300.00335 * 22 20 18 26 26 H 1.09009 * 109.47008 * 299.99580 * 1 2 3 27 27 H 1.09000 * 109.47518 * 59.99577 * 1 2 3 28 28 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46836 * 240.00601 * 2 1 3 30 30 H 1.08997 * 109.47581 * 119.99892 * 2 1 3 31 31 H 1.09002 * 117.50244 * 359.97438 * 5 3 2 32 32 H 1.09007 * 117.50037 * 145.02082 * 5 3 2 33 33 H 1.09000 * 109.46861 * 294.98637 * 8 6 3 34 34 H 1.09000 * 109.47284 * 54.98907 * 8 6 3 35 35 H 0.97000 * 120.00405 * 0.02562 * 9 8 6 36 36 H 1.08000 * 119.95935 * 359.97438 * 13 12 10 37 37 H 1.07996 * 119.66670 * 180.24931 * 14 13 12 38 38 H 1.07998 * 119.71653 * 179.73858 * 15 14 13 39 39 H 1.07998 * 120.05553 * 180.02562 * 16 15 14 40 40 H 0.96999 * 120.00192 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3879 2.1717 0.4810 5 6 2.8441 1.9076 -1.2157 6 6 3.5500 1.6580 0.1186 7 1 4.1803 0.7720 0.1962 8 6 4.0297 2.8806 0.9036 9 7 5.4907 2.8512 1.0081 10 6 6.1394 3.8355 1.6615 11 8 5.5120 4.7477 2.1646 12 6 7.6096 3.8058 1.7672 13 6 8.3248 2.7058 1.3016 14 6 9.7036 2.6845 1.3974 15 6 10.3905 3.7484 1.9664 16 6 9.7109 4.8468 2.4405 17 6 8.3076 4.8957 2.3502 18 6 7.6022 6.0156 2.8331 19 1 6.7025 6.3437 2.3338 20 6 8.0683 6.7045 3.9627 21 7 9.0463 6.2086 4.6726 22 14 7.2905 8.3308 4.4517 23 1 5.8459 8.1255 4.7276 24 1 7.9586 8.8522 5.6712 25 1 7.4491 9.3080 3.3449 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.0102 1.1857 -2.0154 32 1 2.7215 2.9428 -1.5343 33 1 3.7207 3.7887 0.3861 34 1 3.5936 2.8651 1.9024 35 1 5.9912 2.1239 0.6065 36 1 7.8020 1.8697 0.8612 37 1 10.2518 1.8295 1.0304 38 1 11.4676 3.7137 2.0372 39 1 10.2536 5.6700 2.8812 40 1 9.3689 6.6851 5.4535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601609776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = -25.969203 kcal Electronic energy + Delta-G solvation = -20130.616746 eV Core-core repulsion = 17102.328346 eV Total energy + Delta-G solvation = -3028.288399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.76017 -39.26041 -38.39341 -35.79349 -35.14703 -32.94031 -31.81964 -31.34275 -28.12316 -26.96823 -24.64550 -23.86533 -22.73569 -21.92733 -21.50840 -20.74131 -19.37610 -18.01917 -17.16285 -16.93377 -16.15515 -15.98839 -15.80565 -15.48100 -15.18773 -14.98565 -14.62842 -14.48147 -14.26335 -13.85367 -13.45121 -13.16508 -12.92640 -12.85139 -12.80228 -12.52243 -12.37545 -12.31010 -12.12515 -11.91495 -11.86224 -11.47998 -11.14272 -10.92223 -10.82839 -10.22964 -9.91554 -9.38416 -9.22698 -8.67456 -6.36215 0.52407 1.02406 1.32666 1.44379 1.50990 2.20850 2.34624 2.40260 2.79071 2.88020 3.62662 3.72766 3.90477 3.98178 4.24732 4.29437 4.34292 4.39497 4.49674 4.55492 4.61080 4.75510 4.77821 4.86878 4.95605 4.98841 5.10262 5.17095 5.21748 5.25225 5.25787 5.32458 5.34613 5.51812 5.62280 5.69150 5.83187 6.06057 6.11054 6.35003 6.65047 6.80509 6.92589 7.01851 7.66535 8.30069 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019651 B = 0.004218 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.499600 B = 6636.550921 C = 7797.428966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.137 4.137 4 H 0.100 0.900 5 C -0.164 4.164 6 C -0.167 4.167 7 H 0.122 0.878 8 C 0.157 3.843 9 N -0.725 5.725 10 C 0.557 3.443 11 O -0.582 6.582 12 C -0.281 4.281 13 C -0.053 4.053 14 C -0.236 4.236 15 C -0.092 4.092 16 C -0.178 4.178 17 C 0.114 3.886 18 C -0.459 4.459 19 H 0.080 0.920 20 C 0.031 3.969 21 N -0.823 5.823 22 Si 0.979 3.021 23 H -0.274 1.274 24 H -0.258 1.258 25 H -0.257 1.257 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.407 0.593 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.233 -10.891 -8.820 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.156 4.156 4 H 0.118 0.882 5 C -0.201 4.201 6 C -0.185 4.185 7 H 0.140 0.860 8 C 0.033 3.967 9 N -0.379 5.379 10 C 0.350 3.650 11 O -0.464 6.464 12 C -0.286 4.286 13 C -0.072 4.072 14 C -0.255 4.255 15 C -0.111 4.111 16 C -0.197 4.197 17 C 0.110 3.890 18 C -0.488 4.488 19 H 0.098 0.902 20 C -0.183 4.183 21 N -0.450 5.450 22 Si 0.800 3.200 23 H -0.199 1.199 24 H -0.182 1.182 25 H -0.181 1.181 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.244 0.756 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.138 0.862 39 H 0.118 0.882 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.561 -10.212 -8.255 16.243 hybrid contribution 0.076 0.694 0.471 0.842 sum -9.485 -9.518 -7.784 15.529 Atomic orbital electron populations 1.21745 0.94880 1.02132 1.01884 1.21139 0.96462 0.92874 1.02458 1.22551 0.91849 0.99164 1.02033 0.88195 1.23311 1.02766 1.02757 0.91280 1.22452 0.96556 0.98668 1.00873 0.86039 1.20730 0.79926 0.97043 0.98984 1.45761 1.07246 1.27011 1.57889 1.18507 0.88170 0.81142 0.77203 1.90650 1.69645 1.36949 1.49169 1.19836 0.91503 0.98693 1.18550 1.21075 0.94558 0.95477 0.96082 1.20815 0.93961 1.00729 1.10028 1.21194 0.99327 0.93778 0.96752 1.21298 0.93886 0.99596 1.04953 1.17869 0.92344 0.90960 0.87793 1.20105 1.08954 1.09608 1.10162 0.90173 1.26798 0.94350 1.01653 0.95543 1.69735 1.23052 1.38224 1.13986 0.85310 0.78755 0.77199 0.78734 1.19916 1.18205 1.18101 0.93032 0.92454 0.91776 0.90855 0.91631 0.86934 0.89211 0.93323 0.93398 0.75587 0.84897 0.84829 0.86154 0.88207 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.87 71.98 0.71 -1.22 16 2 C -0.09 -1.33 6.22 30.60 0.19 -1.14 16 3 C -0.14 -2.49 5.46 -10.79 -0.06 -2.55 16 4 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 5 C -0.16 -2.96 9.82 30.59 0.30 -2.66 16 6 C -0.17 -3.56 5.57 -10.79 -0.06 -3.62 16 7 H 0.12 2.29 8.04 -2.39 -0.02 2.27 16 8 C 0.16 4.84 5.96 86.38 0.51 5.35 16 9 N -0.72 -25.67 5.50 -466.36 -2.57 -28.24 16 10 C 0.56 26.79 7.72 86.66 0.67 27.46 16 11 O -0.58 -32.89 13.59 -4.07 -0.06 -32.94 16 12 C -0.28 -14.00 5.92 -19.70 -0.12 -14.12 16 13 C -0.05 -2.15 9.52 22.50 0.21 -1.94 16 14 C -0.24 -9.27 10.03 22.41 0.22 -9.04 16 15 C -0.09 -4.03 10.01 22.26 0.22 -3.80 16 16 C -0.18 -9.33 8.62 22.72 0.20 -9.14 16 17 C 0.11 6.43 5.51 -21.11 -0.12 6.31 16 18 C -0.46 -27.13 7.68 23.41 0.18 -26.95 16 19 H 0.08 4.98 5.91 -2.91 -0.02 4.96 16 20 C 0.03 1.70 5.25 85.37 0.45 2.15 16 21 N -0.82 -44.93 11.14 21.88 0.24 -44.69 16 22 Si 0.98 42.56 29.57 68.60 2.03 44.59 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 25 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 26 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.92 7.87 -2.39 -0.02 0.90 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.11 1.62 8.03 -2.39 -0.02 1.60 16 32 H 0.09 1.74 8.03 -2.38 -0.02 1.72 16 33 H 0.05 1.62 7.87 -2.39 -0.02 1.60 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 11.69 6.47 -92.71 -0.60 11.09 16 36 H 0.13 4.11 6.44 -2.91 -0.02 4.09 16 37 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.10 5.46 6.60 -2.91 -0.02 5.44 16 40 H 0.29 14.25 8.29 -92.71 -0.77 13.49 16 Total: -1.00 -68.62 332.73 3.61 -65.01 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.44 Total: 31.16 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 3.52 Total: -34.90 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -2.32 Total: -72.92 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.06 Total: -32.94 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.62 3.61 -65.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601609776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.044 kcal (2) G-P(sol) polarization free energy of solvation -68.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds